Examples with Organization org.orcid.jaxb.model.message.Organization used on opensource projects

Example 11 with Organization

use of org.orcid.jaxb.model.message.Organization in project ORCID-Source by ORCID.

the class OrcidProfileManagerImpl method checkAndUpdateDisambiguatedOrganization.

private void checkAndUpdateDisambiguatedOrganization(List<Affiliation> affiliations) {
    if (affiliations != null && !affiliations.isEmpty()) {
        for (Affiliation affiliation : affiliations) {
            Organization org = affiliation.getOrganization();
            OrgEntity orgEntity = orgManager.getOrgEntity(org);
            // If the org exists
            if (orgEntity != null) {
                // And it have a disambiguated org
                if (orgEntity.getOrgDisambiguated() != null) {
                    // Update the desambiguated org
                    org.setDisambiguatedOrganization(adapter.getDisambiguatedOrganization(orgEntity.getOrgDisambiguated()));
                } else {
                    // Null the disambiguated organization
                    org.setDisambiguatedOrganization(null);
                }
            }
        }
    }
}

Example 12 with Organization

use of org.orcid.jaxb.model.message.Organization in project ORCID-Source by ORCID.

the class Api12Helper method addAffiliation.

protected static void addAffiliation(String userOrcid, String token, String orgName, T2OAuthAPIService<ClientResponse> oauthT2Client) {
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion(OrcidMessage.DEFAULT_VERSION);
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidMessage.setOrcidProfile(orcidProfile);
    OrcidActivities orcidActivities = new OrcidActivities();
    orcidProfile.setOrcidActivities(orcidActivities);
    Affiliations affiliations = new Affiliations();
    orcidActivities.setAffiliations(affiliations);
    Affiliation affiliation = new Affiliation();
    affiliation.setVisibility(Visibility.LIMITED);
    affiliations.getAffiliation().add(affiliation);
    affiliation.setType(AffiliationType.EDUCATION);
    Organization organization = new Organization();
    affiliation.setOrganization(organization);
    organization.setName(orgName);
    OrganizationAddress organizationAddress = new OrganizationAddress();
    organization.setAddress(organizationAddress);
    organizationAddress.setCity("Edinburgh");
    organizationAddress.setCountry(Iso3166Country.GB);
    ClientResponse clientResponse = oauthT2Client.addAffiliationsXml(userOrcid, orcidMessage, token);
    assertEquals(201, clientResponse.getStatus());
}

Example 13 with Organization

use of org.orcid.jaxb.model.message.Organization in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method testOrgReuse.

@Test
@Transactional
@Rollback(true)
public void testOrgReuse() {
    OrcidProfile profile1 = createBasicProfile();
    OrcidHistory history = new OrcidHistory();
    history.setSubmissionDate(new SubmissionDate(DateUtils.convertToXMLGregorianCalendar(new Date())));
    profile1.setOrcidHistory(history);
    history.setClaimed(new Claimed(true));
    OrcidActivities orcidActivities = profile1.getOrcidActivities();
    Affiliations affiliations = new Affiliations();
    orcidActivities.setAffiliations(affiliations);
    Affiliation affiliation = new Affiliation();
    affiliations.getAffiliation().add(affiliation);
    Organization organization = new Organization();
    affiliation.setOrganization(organization);
    organization.setName("New College");
    OrganizationAddress organizationAddress = new OrganizationAddress();
    organization.setAddress(organizationAddress);
    organizationAddress.setCity("Edinburgh");
    organizationAddress.setCountry(Iso3166Country.GB);
    orcidProfileManager.createOrcidProfile(profile1, false, false);
    ProfileEntity profileEntity = profileDao.find(TEST_ORCID);
    assertEquals(1, profileEntity.getOrgAffiliationRelations().size());
    OrgEntity orgEntity = profileEntity.getOrgAffiliationRelations().iterator().next().getOrg();
    assertNotNull(orgEntity);
    // Now create another profile with the same affiliation and check that
    // the org is reused;
    String otherOrcid = "4444-4444-4444-4448";
    OrcidProfile profile2 = createBasicProfile();
    profile2.setOrcidIdentifier(otherOrcid);
    List<Email> emailList2 = profile2.getOrcidBio().getContactDetails().getEmail();
    emailList2.clear();
    emailList2.add(new Email("another@semantico.com"));
    profile2.getOrcidActivities().setAffiliations(affiliations);
    orcidProfileManager.createOrcidProfile(profile2, false, false);
    ProfileEntity profileEntity2 = profileDao.find(otherOrcid);
    assertEquals(1, profileEntity2.getOrgAffiliationRelations().size());
    OrgEntity orgEntity2 = profileEntity2.getOrgAffiliationRelations().iterator().next().getOrg();
    assertNotNull(orgEntity);
    assertEquals(orgEntity.getId(), orgEntity2.getId());
}

Example 14 with Organization

use of org.orcid.jaxb.model.message.Organization in project ORCID-Source by ORCID.

the class OrcidJaxbCopyManagerTest method testUpdatedAffilationsToExistingPreservingVisibility.

@Test
public void testUpdatedAffilationsToExistingPreservingVisibility() throws Exception {
    OrcidProfile existingOrcidProfile = protectedOrcidMessage.getOrcidProfile();
    // create a copy of the profile data for doing a merge
    OrcidProfile updatedOrcidProfile = getOrcidMessage("/orcid-public-full-message-latest.xml").getOrcidProfile();
    Affiliations existingAffiliations = existingOrcidProfile.getOrcidActivities().getAffiliations();
    List<Affiliation> existingAffilationsList = existingAffiliations.getAffiliation();
    Affiliations updatedAffiliations = updatedOrcidProfile.getOrcidActivities().getAffiliations();
    List<Affiliation> updatedAffilationsList = updatedAffiliations.getAffiliation();
    assertEquals("New College", existingAffilationsList.get(0).getOrganization().getName());
    assertEquals("Brown University", existingAffilationsList.get(1).getOrganization().getName());
    assertEquals(Visibility.PUBLIC, existingAffilationsList.get(0).getVisibility());
    assertEquals(Visibility.PUBLIC, existingAffilationsList.get(1).getVisibility());
    assertEquals(4, existingAffilationsList.size());
    assertEquals(4, updatedAffilationsList.size());
    // to test:
    // updating affiliations retains visibility when null - changes content
    updatedAffilationsList.get(0).getOrganization().setName("new affiliation name");
    updatedAffilationsList.get(0).setVisibility(null);
    orcidJaxbCopyManager.copyAffiliationsToExistingPreservingVisibility(existingAffiliations, updatedAffiliations);
    assertEquals("new affiliation name", existingAffilationsList.get(0).getOrganization().getName());
    assertEquals(Visibility.PUBLIC, existingAffilationsList.get(0).getVisibility());
    // updating affiliations changes visibility when populated - changes
    // content
    updatedAffilationsList.get(0).getOrganization().setName("a seperate affiliation name");
    updatedAffilationsList.get(0).setVisibility(Visibility.PRIVATE);
    orcidJaxbCopyManager.copyAffiliationsToExistingPreservingVisibility(existingAffiliations, updatedAffiliations);
    assertEquals("a seperate affiliation name", existingAffilationsList.get(0).getOrganization().getName());
    assertEquals(Visibility.PRIVATE, existingAffilationsList.get(0).getVisibility());
    // adding new affiliations with a null visibility adds an extra element
    // with the def
    Affiliation extraAffiliation = new Affiliation();
    Organization organization = new Organization();
    extraAffiliation.setOrganization(organization);
    organization.setName("extra affiliation");
    updatedAffilationsList.add(extraAffiliation);
    orcidJaxbCopyManager.copyAffiliationsToExistingPreservingVisibility(existingAffiliations, updatedAffiliations);
    assertEquals(5, existingAffilationsList.size());
    assertEquals("a seperate affiliation name", existingAffilationsList.get(0).getOrganization().getName());
    assertEquals("Brown University", existingAffilationsList.get(1).getOrganization().getName());
    assertEquals("extra affiliation", existingAffilationsList.get(4).getOrganization().getName());
    assertEquals(Visibility.PRIVATE, existingAffilationsList.get(0).getVisibility());
    assertEquals(Visibility.PUBLIC, existingAffilationsList.get(1).getVisibility());
    assertEquals(Visibility.PUBLIC, existingAffilationsList.get(4).getVisibility());
}

Example 15 with Organization

use of org.orcid.jaxb.model.message.Organization in project ORCID-Source by ORCID.

the class OrcidProfileManagerBaseTest method getAffiliation.

public Affiliation getAffiliation() throws DatatypeConfigurationException {
    GregorianCalendar cal = new GregorianCalendar();
    XMLGregorianCalendar calendar = DatatypeFactory.newInstance().newXMLGregorianCalendar(cal);
    Affiliation affiliation = new Affiliation();
    affiliation.setStartDate(new FuzzyDate(calendar.getYear(), calendar.getMonth(), calendar.getDay()));
    affiliation.setEndDate(new FuzzyDate(calendar.getYear(), calendar.getMonth(), calendar.getDay()));
    affiliation.setType(AffiliationType.EDUCATION);
    affiliation.setRoleTitle("A Role");
    affiliation.setDepartmentName("A Department");
    Organization organization = new Organization();
    affiliation.setOrganization(organization);
    organization.setName("Past Institution");
    OrganizationAddress address = new OrganizationAddress();
    address.setCountry(Iso3166Country.GB);
    organization.setAddress(address);
    return affiliation;
}