Examples with BulkElement org.orcid.jaxb.model.record.bulk.BulkElement used on opensource projects

Example 11 with BulkElement

use of org.orcid.jaxb.model.record.bulk.BulkElement in project ORCID-Source by ORCID.

the class WorkManagerTest method testCreateWorksWithBulkSomeOKSomeErrors.

@Test
public void testCreateWorksWithBulkSomeOKSomeErrors() {
    String orcid = "0000-0000-0000-0003";
    when(sourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ClientDetailsEntity(CLIENT_2_ID)));
    // Lets send a bulk of 6 works
    WorkBulk bulk = new WorkBulk();
    // Work # 1 - Fine
    Work work1 = getWork(null);
    work1.getExternalIdentifiers().getExternalIdentifier().clear();
    work1.getExternalIdentifiers().getExternalIdentifier().add(getDuplicateExternalId());
    work1.getWorkTitle().getTitle().setContent("Work # 1");
    bulk.getBulk().add(work1);
    // Work # 2 - Fine
    Work work2 = getWork(null);
    work2.getWorkTitle().getTitle().setContent("Work # 2");
    bulk.getBulk().add(work2);
    // Work # 3 - Duplicated of Work # 1
    Work work3 = getWork(null);
    work3.getExternalIdentifiers().getExternalIdentifier().clear();
    work3.getExternalIdentifiers().getExternalIdentifier().add(getDuplicateExternalId());
    work3.getWorkTitle().getTitle().setContent("Work # 3");
    bulk.getBulk().add(work3);
    // Work # 4 - Fine
    Work work4 = getWork("new-ext-id-" + System.currentTimeMillis());
    work4.getWorkTitle().getTitle().setContent("Work # 4");
    bulk.getBulk().add(work4);
    // Work # 5 - Duplicated of existing work
    Work work5 = getWork(null);
    ExternalID dupExtId = new ExternalID();
    dupExtId.setRelationship(Relationship.SELF);
    dupExtId.setType("doi");
    dupExtId.setValue("1");
    work5.getExternalIdentifiers().getExternalIdentifier().clear();
    work5.getExternalIdentifiers().getExternalIdentifier().add(dupExtId);
    work5.getWorkTitle().getTitle().setContent("Work # 5");
    bulk.getBulk().add(work5);
    // Work # 6 - No title specified
    Work work6 = getWork(null);
    work6.getWorkTitle().getTitle().setContent(null);
    bulk.getBulk().add(work6);
    bulk = workManager.createWorks(orcid, bulk);
    assertNotNull(bulk);
    assertEquals(6, bulk.getBulk().size());
    List<Long> worksToDelete = new ArrayList<Long>();
    for (int i = 0; i < bulk.getBulk().size(); i++) {
        BulkElement element = bulk.getBulk().get(i);
        switch(i) {
            case 0:
            case 1:
            case 3:
                assertTrue(Work.class.isAssignableFrom(element.getClass()));
                Work work = (Work) element;
                assertNotNull(work);
                assertNotNull(work.getPutCode());
                if (i == 0) {
                    assertEquals("Work # 1", work.getWorkTitle().getTitle().getContent());
                } else if (i == 1) {
                    assertEquals("Work # 2", work.getWorkTitle().getTitle().getContent());
                } else {
                    assertEquals("Work # 4", work.getWorkTitle().getTitle().getContent());
                }
                worksToDelete.add(work.getPutCode());
                break;
            case 2:
            case 4:
            case 5:
                assertTrue("Error on id: " + i, OrcidError.class.isAssignableFrom(element.getClass()));
                OrcidError error = (OrcidError) element;
                if (i == 2) {
                    assertEquals(Integer.valueOf(9021), error.getErrorCode());
                } else if (i == 4) {
                    assertEquals(Integer.valueOf(9021), error.getErrorCode());
                } else {
                    assertEquals(Integer.valueOf(9022), error.getErrorCode());
                }
                break;
        }
    }
    // Delete new works
    for (Long putCode : worksToDelete) {
        assertTrue(workManager.checkSourceAndRemoveWork(orcid, putCode));
    }
}

Example 12 with BulkElement

use of org.orcid.jaxb.model.record.bulk.BulkElement in project ORCID-Source by ORCID.

the class WorkManagerTest method testCreateWorksWithBulkSomeOKSomeErrors.

@Test
public void testCreateWorksWithBulkSomeOKSomeErrors() {
    String orcid = "0000-0000-0000-0003";
    when(sourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ClientDetailsEntity(CLIENT_2_ID)));
    // Lets send a bulk of 6 works
    WorkBulk bulk = new WorkBulk();
    // Work # 1 - Fine
    Work work1 = getWork(null);
    ExternalID extId = new ExternalID();
    extId.setRelationship(Relationship.SELF);
    extId.setType("doi");
    extId.setUrl(new Url("http://doi/1"));
    extId.setValue("doi-1");
    work1.getExternalIdentifiers().getExternalIdentifier().clear();
    work1.getExternalIdentifiers().getExternalIdentifier().add(extId);
    work1.getWorkTitle().getTitle().setContent("Work # 1");
    bulk.getBulk().add(work1);
    // Work # 2 - Fine
    Work work2 = getWork(null);
    work2.getWorkTitle().getTitle().setContent("Work # 2");
    bulk.getBulk().add(work2);
    // Work # 3 - Duplicated of Work # 1
    Work work3 = getWork(null);
    work3.getExternalIdentifiers().getExternalIdentifier().clear();
    work3.getExternalIdentifiers().getExternalIdentifier().add(extId);
    work3.getWorkTitle().getTitle().setContent("Work # 3");
    bulk.getBulk().add(work3);
    // Work # 4 - Fine
    Work work4 = getWork("new-ext-id-" + System.currentTimeMillis());
    work4.getWorkTitle().getTitle().setContent("Work # 4");
    bulk.getBulk().add(work4);
    // Work # 5 - Duplicated of existing work
    Work work5 = getWork(null);
    ExternalID dupExtId = new ExternalID();
    dupExtId.setRelationship(Relationship.SELF);
    dupExtId.setType("doi");
    dupExtId.setValue("1");
    work5.getExternalIdentifiers().getExternalIdentifier().clear();
    work5.getExternalIdentifiers().getExternalIdentifier().add(dupExtId);
    work5.getWorkTitle().getTitle().setContent("Work # 5");
    bulk.getBulk().add(work5);
    // Work # 6 - No title specified
    Work work6 = getWork(null);
    work6.getWorkTitle().getTitle().setContent(null);
    bulk.getBulk().add(work6);
    bulk = workManager.createWorks(orcid, bulk);
    assertNotNull(bulk);
    assertEquals(6, bulk.getBulk().size());
    List<Long> worksToDelete = new ArrayList<Long>();
    for (int i = 0; i < bulk.getBulk().size(); i++) {
        BulkElement element = bulk.getBulk().get(i);
        switch(i) {
            case 0:
            case 1:
            case 3:
                assertTrue(Work.class.isAssignableFrom(element.getClass()));
                Work work = (Work) element;
                assertNotNull(work);
                assertNotNull(work.getPutCode());
                if (i == 0) {
                    assertEquals("Work # 1", work.getWorkTitle().getTitle().getContent());
                } else if (i == 1) {
                    assertEquals("Work # 2", work.getWorkTitle().getTitle().getContent());
                } else {
                    assertEquals("Work # 4", work.getWorkTitle().getTitle().getContent());
                }
                worksToDelete.add(work.getPutCode());
                break;
            case 2:
            case 4:
            case 5:
                assertTrue("Error on id: " + i, OrcidError.class.isAssignableFrom(element.getClass()));
                OrcidError error = (OrcidError) element;
                if (i == 2) {
                    assertEquals(Integer.valueOf(9021), error.getErrorCode());
                } else if (i == 4) {
                    assertEquals(Integer.valueOf(9021), error.getErrorCode());
                } else {
                    assertEquals(Integer.valueOf(9022), error.getErrorCode());
                }
                break;
        }
    }
    // Delete new works
    for (Long putCode : worksToDelete) {
        assertTrue(workManager.checkSourceAndRemoveWork(orcid, putCode));
    }
}

Example 13 with BulkElement

use of org.orcid.jaxb.model.record.bulk.BulkElement in project ORCID-Source by ORCID.

the class WorkManagerImpl method createWorks.

/**
 * Add a list of works to the given profile
 *
 * @param works
 *            The list of works that want to be added
 * @param orcid
 *            The id of the user we want to add the works to
 *
 * @return the work bulk with the put codes of the new works or the error
 *         that indicates why a work can't be added
 */
@Override
@Transactional
public WorkBulk createWorks(String orcid, WorkBulk workBulk) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    List<Work> existingWorks = this.findWorks(orcid);
    if (workBulk.getBulk() != null && !workBulk.getBulk().isEmpty()) {
        List<BulkElement> bulk = workBulk.getBulk();
        Set<ExternalID> existingExternalIdentifiers = buildExistingExternalIdsSet(existingWorks, sourceEntity.getSourceId());
        if ((existingWorks.size() + bulk.size()) > this.maxNumOfActivities) {
            throw new ExceedMaxNumberOfElementsException();
        }
        // Check bulk size
        if (bulk.size() > maxBulkSize) {
            Locale locale = localeManager.getLocale();
            throw new IllegalArgumentException(messageSource.getMessage("apiError.validation_too_many_elements_in_bulk.exception", new Object[] { maxBulkSize }, locale));
        }
        for (int i = 0; i < bulk.size(); i++) {
            if (Work.class.isAssignableFrom(bulk.get(i).getClass())) {
                Work work = (Work) bulk.get(i);
                try {
                    activityValidator.validateWork(work, sourceEntity, true, true, null);
                    // Validate it is not duplicated
                    if (work.getExternalIdentifiers() != null) {
                        for (ExternalID extId : work.getExternalIdentifiers().getExternalIdentifier()) {
                            // normalise the provided ID
                            extId.setNormalized(new TransientNonEmptyString(norm.normalise(extId.getType(), extId.getValue())));
                            // If the external id exists and is a SELF identifier, then mark it as duplicated
                            if (existingExternalIdentifiers.contains(extId) && Relationship.SELF.equals(extId.getRelationship())) {
                                Map<String, String> params = new HashMap<String, String>();
                                params.put("clientName", sourceEntity.getSourceName());
                                throw new OrcidDuplicatedActivityException(params);
                            }
                        }
                    }
                    // Save the work
                    WorkEntity workEntity = jpaJaxbWorkAdapter.toWorkEntity(work);
                    ProfileEntity profile = profileEntityCacheManager.retrieve(orcid);
                    workEntity.setOrcid(orcid);
                    workEntity.setAddedToProfileDate(new Date());
                    // Set source id
                    if (sourceEntity.getSourceProfile() != null) {
                        workEntity.setSourceId(sourceEntity.getSourceProfile().getId());
                    }
                    if (sourceEntity.getSourceClient() != null) {
                        workEntity.setClientSourceId(sourceEntity.getSourceClient().getId());
                    }
                    setIncomingWorkPrivacy(workEntity, profile);
                    DisplayIndexCalculatorHelper.setDisplayIndexOnNewEntity(workEntity, true);
                    workDao.persist(workEntity);
                    // Update the element in the bulk
                    Work updatedWork = jpaJaxbWorkAdapter.toWork(workEntity);
                    bulk.set(i, updatedWork);
                    // Add the work extIds to the list of existing external identifiers
                    addExternalIdsToExistingSet(updatedWork, existingExternalIdentifiers);
                } catch (Exception e) {
                    // Get the exception
                    OrcidError orcidError = orcidCoreExceptionMapper.getV3OrcidError(e);
                    bulk.set(i, orcidError);
                }
            }
        }
        workDao.flush();
    }
    return workBulk;
}

Example 14 with BulkElement

use of org.orcid.jaxb.model.record.bulk.BulkElement in project ORCID-Source by ORCID.

the class OrcidSecurityManagerImpl method checkAndFilter.

@Override
public void checkAndFilter(String orcid, WorkBulk workBulk, ScopePathType scopePathType) {
    isMyToken(orcid);
    List<BulkElement> bulkElements = workBulk.getBulk();
    List<BulkElement> filteredElements = new ArrayList<>();
    for (int i = 0; i < bulkElements.size(); i++) {
        BulkElement element = bulkElements.get(i);
        if (element instanceof OrcidError) {
            filteredElements.add(element);
            continue;
        }
        try {
            checkAndFilter(orcid, (Work) element, scopePathType, true);
            filteredElements.add(element);
        } catch (Exception e) {
            if (e instanceof OrcidUnauthorizedException) {
                throw e;
            }
            OrcidError error = orcidCoreExceptionMapper.getOrcidError(e);
            filteredElements.add(error);
        }
    }
    workBulk.setBulk(filteredElements);
}

Example 15 with BulkElement

use of org.orcid.jaxb.model.record.bulk.BulkElement in project ORCID-Source by ORCID.

the class PublicAPISecurityManagerV3Impl method filter.

@Override
public void filter(WorkBulk workBulk) {
    if (workBulk != null && workBulk.getBulk() != null) {
        List<BulkElement> filtered = new ArrayList<>();
        for (int i = 0; i < workBulk.getBulk().size(); i++) {
            BulkElement bulkElement = workBulk.getBulk().get(i);
            if (bulkElement instanceof OrcidError) {
                filtered.add(bulkElement);
            } else {
                try {
                    checkIsPublic((Work) bulkElement);
                    filtered.add(bulkElement);
                } catch (OrcidNonPublicElementException e) {
                    filtered.add(orcidCoreExceptionMapper.getV3OrcidError(e));
                }
            }
        }
        workBulk.setBulk(filtered);
    }
}