use of org.orcid.jaxb.model.record.summary_rc1.WorkSummary in project ORCID-Source by ORCID.
the class OrcidSecurityManager_ActivitiesSummaryTest method testActivitiesSummary_When_AffiliationsAndPeerReviewReadLimited_And_NotSource.
@Test
public void testActivitiesSummary_When_AffiliationsAndPeerReviewReadLimited_And_NotSource() {
SecurityContextTestUtils.setUpSecurityContext(ORCID_1, CLIENT_1, ScopePathType.AFFILIATIONS_READ_LIMITED, ScopePathType.PEER_REVIEW_READ_LIMITED);
EducationSummary e1 = createEducationSummary(Visibility.PUBLIC, CLIENT_2);
EducationSummary e2 = createEducationSummary(Visibility.LIMITED, CLIENT_2);
EducationSummary e3 = createEducationSummary(Visibility.PRIVATE, CLIENT_2);
EmploymentSummary em1 = createEmploymentSummary(Visibility.PUBLIC, CLIENT_2);
EmploymentSummary em2 = createEmploymentSummary(Visibility.LIMITED, CLIENT_2);
EmploymentSummary em3 = createEmploymentSummary(Visibility.PRIVATE, CLIENT_2);
FundingSummary f1 = createFundingSummary(Visibility.PUBLIC, CLIENT_2, EXTID_1);
FundingSummary f2 = createFundingSummary(Visibility.LIMITED, CLIENT_2, EXTID_2);
FundingSummary f3 = createFundingSummary(Visibility.PRIVATE, CLIENT_2, EXTID_3);
PeerReviewSummary p1 = createPeerReviewSummary(Visibility.PUBLIC, CLIENT_2, EXTID_1);
PeerReviewSummary p2 = createPeerReviewSummary(Visibility.LIMITED, CLIENT_2, EXTID_2);
PeerReviewSummary p3 = createPeerReviewSummary(Visibility.PRIVATE, CLIENT_2, EXTID_3);
WorkSummary w1 = createWorkSummary(Visibility.PUBLIC, CLIENT_2, EXTID_1);
WorkSummary w2 = createWorkSummary(Visibility.LIMITED, CLIENT_2, EXTID_2);
WorkSummary w3 = createWorkSummary(Visibility.PRIVATE, CLIENT_2, EXTID_3);
ActivitiesSummary as = new ActivitiesSummary();
as.setEducations(createEducations(e1, e2, e3));
as.setEmployments(createEmployments(em1, em2, em3));
as.setFundings(createFundings(f1, f2, f3));
as.setPeerReviews(createPeerReviews(p1, p2, p3));
as.setWorks(createWorks(w1, w2, w3));
orcidSecurityManager.checkAndFilter(ORCID_1, as);
// Check it have limited Educations
assertNotNull(as.getEducations());
assertEquals(2, as.getEducations().getSummaries().size());
assertTrue(as.getEducations().getSummaries().contains(e1));
assertTrue(as.getEducations().getSummaries().contains(e2));
assertFalse(as.getEducations().getSummaries().contains(e3));
// Check it have limited Employments
assertNotNull(as.getEmployments());
assertEquals(2, as.getEmployments().getSummaries().size());
assertTrue(as.getEmployments().getSummaries().contains(em1));
assertTrue(as.getEmployments().getSummaries().contains(em2));
assertFalse(as.getEmployments().getSummaries().contains(em3));
// Check it have only public funding
assertNotNull(as.getFundings());
assertEquals(1, as.getFundings().getFundingGroup().size());
assertEquals(1, as.getFundings().getFundingGroup().get(0).getActivities().size());
assertTrue(as.getFundings().getFundingGroup().get(0).getActivities().contains(f1));
assertFalse(as.getFundings().getFundingGroup().get(0).getActivities().contains(f2));
assertFalse(as.getFundings().getFundingGroup().get(0).getActivities().contains(f3));
assertEquals(2, as.getFundings().getFundingGroup().get(0).getIdentifiers().getExternalIdentifier().size());
assertTrue(as.getFundings().getFundingGroup().get(0).getIdentifiers().getExternalIdentifier().contains(getExtId(EXTID_1)));
assertFalse(as.getFundings().getFundingGroup().get(0).getIdentifiers().getExternalIdentifier().contains(getExtId(EXTID_2)));
assertFalse(as.getFundings().getFundingGroup().get(0).getIdentifiers().getExternalIdentifier().contains(getExtId(EXTID_3)));
assertTrue(as.getFundings().getFundingGroup().get(0).getIdentifiers().getExternalIdentifier().contains(getExtId(EXTID_SHARED)));
// Check it have limited peer reviews
assertNotNull(as.getPeerReviews());
assertEquals(1, as.getPeerReviews().getPeerReviewGroup().size());
assertEquals(2, as.getPeerReviews().getPeerReviewGroup().get(0).getActivities().size());
assertTrue(as.getPeerReviews().getPeerReviewGroup().get(0).getActivities().contains(p1));
assertTrue(as.getPeerReviews().getPeerReviewGroup().get(0).getActivities().contains(p2));
assertFalse(as.getPeerReviews().getPeerReviewGroup().get(0).getActivities().contains(p3));
assertEquals(1, as.getPeerReviews().getPeerReviewGroup().get(0).getIdentifiers().getExternalIdentifier().size());
assertTrue(as.getPeerReviews().getPeerReviewGroup().get(0).getIdentifiers().getExternalIdentifier().contains(getExtId(EXTID_SHARED, "peer-review")));
// Check it have only public works
assertNotNull(as.getWorks());
assertEquals(1, as.getWorks().getWorkGroup().size());
assertEquals(1, as.getWorks().getWorkGroup().get(0).getActivities().size());
assertTrue(as.getWorks().getWorkGroup().get(0).getActivities().contains(w1));
assertFalse(as.getWorks().getWorkGroup().get(0).getActivities().contains(w2));
assertFalse(as.getWorks().getWorkGroup().get(0).getActivities().contains(w3));
assertEquals(2, as.getWorks().getWorkGroup().get(0).getIdentifiers().getExternalIdentifier().size());
assertTrue(as.getWorks().getWorkGroup().get(0).getIdentifiers().getExternalIdentifier().contains(getExtId(EXTID_1)));
assertFalse(as.getWorks().getWorkGroup().get(0).getIdentifiers().getExternalIdentifier().contains(getExtId(EXTID_2)));
assertFalse(as.getWorks().getWorkGroup().get(0).getIdentifiers().getExternalIdentifier().contains(getExtId(EXTID_3)));
assertTrue(as.getWorks().getWorkGroup().get(0).getIdentifiers().getExternalIdentifier().contains(getExtId(EXTID_SHARED)));
}
use of org.orcid.jaxb.model.record.summary_rc1.WorkSummary in project ORCID-Source by ORCID.
the class RecordTest method testViewRecordFromPublicAPI.
@Test
public void testViewRecordFromPublicAPI() {
ClientResponse response = publicV2ApiClient.viewRecordXML(getUser1OrcidId());
assertNotNull(response);
assertEquals("invalid " + response, 200, response.getStatus());
Record record = response.getEntity(Record.class);
assertNotNull(record);
assertNotNull(record.getOrcidIdentifier());
assertEquals(getUser1OrcidId(), record.getOrcidIdentifier().getPath());
//Check the visibility of every activity that exists
if (record.getActivitiesSummary() != null) {
if (record.getActivitiesSummary() != null) {
//Educations
if (record.getActivitiesSummary().getEducations() != null) {
Educations e = record.getActivitiesSummary().getEducations();
if (e.getSummaries() != null) {
for (EducationSummary s : e.getSummaries()) {
assertNotNull(s.getSource());
assertEquals(Visibility.PUBLIC, s.getVisibility());
}
}
}
//Employments
if (record.getActivitiesSummary().getEmployments() != null) {
Employments e = record.getActivitiesSummary().getEmployments();
if (e.getSummaries() != null) {
for (EmploymentSummary s : e.getSummaries()) {
assertNotNull(s.getSource());
assertEquals(Visibility.PUBLIC, s.getVisibility());
}
}
}
//Fundings
if (record.getActivitiesSummary().getFundings() != null) {
Fundings f = record.getActivitiesSummary().getFundings();
List<FundingGroup> groups = f.getFundingGroup();
if (groups != null) {
for (FundingGroup fGroup : groups) {
List<FundingSummary> summaries = fGroup.getFundingSummary();
if (summaries != null) {
for (FundingSummary s : summaries) {
assertNotNull(s.getSource());
assertEquals(Visibility.PUBLIC, s.getVisibility());
}
}
}
}
}
//PeerReviews
if (record.getActivitiesSummary().getPeerReviews() != null) {
PeerReviews p = record.getActivitiesSummary().getPeerReviews();
List<PeerReviewGroup> groups = p.getPeerReviewGroup();
if (groups != null) {
for (PeerReviewGroup pGroup : groups) {
List<PeerReviewSummary> summaries = pGroup.getPeerReviewSummary();
if (summaries != null) {
for (PeerReviewSummary s : summaries) {
assertNotNull(s.getSource());
assertEquals(Visibility.PUBLIC, s.getVisibility());
}
}
}
}
}
//Works
if (record.getActivitiesSummary().getWorks() != null) {
Works w = record.getActivitiesSummary().getWorks();
List<WorkGroup> groups = w.getWorkGroup();
if (groups != null) {
for (WorkGroup wGroup : groups) {
List<WorkSummary> summaries = wGroup.getWorkSummary();
if (summaries != null) {
for (WorkSummary s : summaries) {
assertNotNull(s.getSource());
assertEquals(Visibility.PUBLIC, s.getVisibility());
}
}
}
}
}
}
}
//Check the visibility of every biography elements that exists
if (record.getPerson() != null) {
//Address
if (record.getPerson().getAddresses() != null) {
Addresses addresses = record.getPerson().getAddresses();
List<Address> list = addresses.getAddress();
if (list != null) {
for (Address o : list) {
assertNotNull(o.getSource());
assertEquals(Visibility.PUBLIC, o.getVisibility());
}
}
}
//Biography
if (record.getPerson().getBiography() != null) {
Biography b = record.getPerson().getBiography();
if (b != null) {
assertNotNull(b.getVisibility());
assertEquals(Visibility.PUBLIC, b.getVisibility());
}
}
//Emails
if (record.getPerson().getEmails() != null) {
Emails emails = record.getPerson().getEmails();
List<Email> list = emails.getEmails();
if (list != null) {
for (Email e : list) {
assertNotNull(e.getVisibility());
assertEquals(Visibility.PUBLIC, e.getVisibility());
}
}
}
//External identifiers
if (record.getPerson().getExternalIdentifiers() != null) {
PersonExternalIdentifiers extIds = record.getPerson().getExternalIdentifiers();
List<PersonExternalIdentifier> list = extIds.getExternalIdentifiers();
if (list != null) {
for (PersonExternalIdentifier e : list) {
assertEquals(Visibility.PUBLIC, e.getVisibility());
}
}
}
//Keywords
if (record.getPerson().getKeywords() != null) {
Keywords keywords = record.getPerson().getKeywords();
List<Keyword> list = keywords.getKeywords();
if (list != null) {
for (Keyword e : list) {
assertEquals(Visibility.PUBLIC, e.getVisibility());
}
}
}
//Name
if (record.getPerson().getName() != null) {
Name name = record.getPerson().getName();
assertEquals(Visibility.PUBLIC, name.getVisibility());
}
//Other names
if (record.getPerson().getOtherNames() != null) {
OtherNames otherNames = record.getPerson().getOtherNames();
List<OtherName> list = otherNames.getOtherNames();
if (list != null) {
for (OtherName e : list) {
assertEquals(Visibility.PUBLIC, e.getVisibility());
}
}
}
//Researcher urls
if (record.getPerson().getResearcherUrls() != null) {
ResearcherUrls rUrls = record.getPerson().getResearcherUrls();
List<ResearcherUrl> list = rUrls.getResearcherUrls();
if (list != null) {
for (ResearcherUrl e : list) {
assertEquals(Visibility.PUBLIC, e.getVisibility());
}
}
}
}
}
use of org.orcid.jaxb.model.record.summary_rc1.WorkSummary in project ORCID-Source by ORCID.
the class RecordTest method testViewRecordFromPublicAPI.
@Test
public void testViewRecordFromPublicAPI() {
ClientResponse response = publicV2ApiClient.viewRecordXML(getUser1OrcidId());
assertNotNull(response);
assertEquals("invalid " + response, 200, response.getStatus());
Record record = response.getEntity(Record.class);
assertNotNull(record);
assertNotNull(record.getOrcidIdentifier());
assertEquals(getUser1OrcidId(), record.getOrcidIdentifier().getPath());
//Check the visibility of every activity that exists
if (record.getActivitiesSummary() != null) {
if (record.getActivitiesSummary() != null) {
//Educations
if (record.getActivitiesSummary().getEducations() != null) {
Educations e = record.getActivitiesSummary().getEducations();
if (e.getSummaries() != null) {
for (EducationSummary s : e.getSummaries()) {
assertNotNull(s.getSource());
assertEquals(Visibility.PUBLIC, s.getVisibility());
}
}
}
//Employments
if (record.getActivitiesSummary().getEmployments() != null) {
Employments e = record.getActivitiesSummary().getEmployments();
if (e.getSummaries() != null) {
for (EmploymentSummary s : e.getSummaries()) {
assertNotNull(s.getSource());
assertEquals(Visibility.PUBLIC, s.getVisibility());
}
}
}
//Fundings
if (record.getActivitiesSummary().getFundings() != null) {
Fundings f = record.getActivitiesSummary().getFundings();
List<FundingGroup> groups = f.getFundingGroup();
if (groups != null) {
for (FundingGroup fGroup : groups) {
List<FundingSummary> summaries = fGroup.getFundingSummary();
if (summaries != null) {
for (FundingSummary s : summaries) {
assertNotNull(s.getSource());
assertEquals(Visibility.PUBLIC, s.getVisibility());
}
}
}
}
}
//PeerReviews
if (record.getActivitiesSummary().getPeerReviews() != null) {
PeerReviews p = record.getActivitiesSummary().getPeerReviews();
List<PeerReviewGroup> groups = p.getPeerReviewGroup();
if (groups != null) {
for (PeerReviewGroup pGroup : groups) {
List<PeerReviewSummary> summaries = pGroup.getPeerReviewSummary();
if (summaries != null) {
for (PeerReviewSummary s : summaries) {
assertNotNull(s.getSource());
assertEquals(Visibility.PUBLIC, s.getVisibility());
}
}
}
}
}
//Works
if (record.getActivitiesSummary().getWorks() != null) {
Works w = record.getActivitiesSummary().getWorks();
List<WorkGroup> groups = w.getWorkGroup();
if (groups != null) {
for (WorkGroup wGroup : groups) {
List<WorkSummary> summaries = wGroup.getWorkSummary();
if (summaries != null) {
for (WorkSummary s : summaries) {
assertNotNull(s.getSource());
assertEquals(Visibility.PUBLIC, s.getVisibility());
}
}
}
}
}
}
}
//Check the visibility of every biography elements that exists
if (record.getPerson() != null) {
//Address
if (record.getPerson().getAddresses() != null) {
Addresses addresses = record.getPerson().getAddresses();
List<Address> list = addresses.getAddress();
if (list != null) {
for (Address o : list) {
assertNotNull(o.getSource());
assertEquals(Visibility.PUBLIC, o.getVisibility());
}
}
}
//Biography
if (record.getPerson().getBiography() != null) {
Biography b = record.getPerson().getBiography();
if (b != null) {
assertNotNull(b.getVisibility());
assertEquals(Visibility.PUBLIC, b.getVisibility());
}
}
//Emails
if (record.getPerson().getEmails() != null) {
Emails emails = record.getPerson().getEmails();
List<Email> list = emails.getEmails();
if (list != null) {
for (Email e : list) {
assertNotNull(e.getVisibility());
assertEquals(Visibility.PUBLIC, e.getVisibility());
}
}
}
//External identifiers
if (record.getPerson().getExternalIdentifiers() != null) {
PersonExternalIdentifiers extIds = record.getPerson().getExternalIdentifiers();
List<PersonExternalIdentifier> list = extIds.getExternalIdentifiers();
if (list != null) {
for (PersonExternalIdentifier e : list) {
assertEquals(Visibility.PUBLIC, e.getVisibility());
}
}
}
//Keywords
if (record.getPerson().getKeywords() != null) {
Keywords keywords = record.getPerson().getKeywords();
List<Keyword> list = keywords.getKeywords();
if (list != null) {
for (Keyword e : list) {
assertEquals(Visibility.PUBLIC, e.getVisibility());
}
}
}
//Name
if (record.getPerson().getName() != null) {
Name name = record.getPerson().getName();
assertEquals(Visibility.PUBLIC, name.getVisibility());
}
//Other names
if (record.getPerson().getOtherNames() != null) {
OtherNames otherNames = record.getPerson().getOtherNames();
List<OtherName> list = otherNames.getOtherNames();
if (list != null) {
for (OtherName e : list) {
assertEquals(Visibility.PUBLIC, e.getVisibility());
}
}
}
//Researcher urls
if (record.getPerson().getResearcherUrls() != null) {
ResearcherUrls rUrls = record.getPerson().getResearcherUrls();
List<ResearcherUrl> list = rUrls.getResearcherUrls();
if (list != null) {
for (ResearcherUrl e : list) {
assertEquals(Visibility.PUBLIC, e.getVisibility());
}
}
}
}
}
use of org.orcid.jaxb.model.record.summary_rc1.WorkSummary in project ORCID-Source by ORCID.
the class WorksTest method testWorksWithPartOfRelationshipDontGetGrouped.
@Test
public void testWorksWithPartOfRelationshipDontGetGrouped() throws JSONException, InterruptedException, URISyntaxException {
long time = System.currentTimeMillis();
String accessTokenForClient1 = getAccessToken();
String accessTokenForClient2 = getAccessToken(getUser1OrcidId(), getUser1Password(), getScopes(ScopePathType.ACTIVITIES_UPDATE, ScopePathType.ACTIVITIES_READ_LIMITED), getClient2ClientId(), getClient2ClientSecret(), getClient2RedirectUri());
Work work1 = (Work) unmarshallFromPath("/record_2.0_rc3/samples/work-2.0_rc3.xml", Work.class);
work1.setPutCode(null);
work1.setVisibility(Visibility.PUBLIC);
work1.getExternalIdentifiers().getExternalIdentifier().clear();
org.orcid.jaxb.model.record_rc3.WorkTitle title1 = new org.orcid.jaxb.model.record_rc3.WorkTitle();
title1.setTitle(new Title("Work # 1" + time));
work1.setWorkTitle(title1);
ExternalID wExtId1 = new ExternalID();
wExtId1.setValue("Work Id " + time);
wExtId1.setType(WorkExternalIdentifierType.AGR.value());
wExtId1.setRelationship(Relationship.SELF);
wExtId1.setUrl(new Url("http://orcid.org/work#1"));
work1.getExternalIdentifiers().getExternalIdentifier().clear();
work1.getExternalIdentifiers().getExternalIdentifier().add(wExtId1);
Work work2 = (Work) unmarshallFromPath("/record_2.0_rc3/samples/work-2.0_rc3.xml", Work.class);
work2.setPutCode(null);
work2.setVisibility(Visibility.PUBLIC);
org.orcid.jaxb.model.record_rc3.WorkTitle title2 = new org.orcid.jaxb.model.record_rc3.WorkTitle();
title2.setTitle(new Title("Work # 2" + time));
work2.setWorkTitle(title2);
work2.getExternalIdentifiers().getExternalIdentifier().clear();
ExternalID wExtId2 = new ExternalID();
wExtId2.setValue("Work Id " + time);
wExtId2.setType(WorkExternalIdentifierType.AGR.value());
wExtId2.setRelationship(Relationship.PART_OF);
wExtId2.setUrl(new Url("http://orcid.org/work#2"));
work2.getExternalIdentifiers().getExternalIdentifier().clear();
work2.getExternalIdentifiers().getExternalIdentifier().add(wExtId2);
Work work3 = (Work) unmarshallFromPath("/record_2.0_rc3/samples/work-2.0_rc3.xml", Work.class);
work3.setPutCode(null);
work3.setVisibility(Visibility.PUBLIC);
org.orcid.jaxb.model.record_rc3.WorkTitle title3 = new org.orcid.jaxb.model.record_rc3.WorkTitle();
title3.setTitle(new Title("Work # 3" + time));
work3.setWorkTitle(title3);
work3.getExternalIdentifiers().getExternalIdentifier().clear();
ExternalID wExtId3 = new ExternalID();
wExtId3.setValue("Work Id " + time);
wExtId3.setType(WorkExternalIdentifierType.AGR.value());
wExtId3.setRelationship(Relationship.SELF);
wExtId3.setUrl(new Url("http://orcid.org/work#3"));
work3.getExternalIdentifiers().getExternalIdentifier().clear();
work3.getExternalIdentifiers().getExternalIdentifier().add(wExtId3);
//Add the three works
ClientResponse postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work1, accessTokenForClient1);
assertNotNull(postResponse);
assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
Long putCode1 = getPutCodeFromResponse(postResponse);
postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work2, accessTokenForClient1);
assertNotNull(postResponse);
assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
Long putCode2 = getPutCodeFromResponse(postResponse);
postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work3, accessTokenForClient2);
assertNotNull(postResponse);
assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
Long putCode3 = getPutCodeFromResponse(postResponse);
ClientResponse activitiesResponse = memberV2ApiClient.viewActivities(this.getUser1OrcidId(), accessTokenForClient1);
assertEquals(Response.Status.OK.getStatusCode(), activitiesResponse.getStatus());
ActivitiesSummary activities = activitiesResponse.getEntity(ActivitiesSummary.class);
assertNotNull(activities);
assertFalse(activities.getWorks().getWorkGroup().isEmpty());
WorkGroup work1Group = null;
WorkGroup work2Group = null;
WorkGroup work3Group = null;
boolean work1found = false;
boolean work2found = false;
boolean work3found = false;
for (WorkGroup group : activities.getWorks().getWorkGroup()) {
if (group.getIdentifiers().getExternalIdentifier() == null || group.getIdentifiers().getExternalIdentifier().isEmpty()) {
for (WorkSummary summary : group.getWorkSummary()) {
String title = summary.getTitle().getTitle().getContent();
if (("Work # 2" + time).equals(title)) {
work2found = true;
work2Group = group;
}
}
} else {
for (ExternalID id : group.getIdentifiers().getExternalIdentifier()) {
//If it is the ID is the one we are looking for
if (id.getValue().equals("Work Id " + time)) {
for (WorkSummary summary : group.getWorkSummary()) {
String title = summary.getTitle().getTitle().getContent();
if (("Work # 1" + time).equals(title)) {
work1found = true;
work1Group = group;
} else if (("Work # 3" + time).equals(title)) {
work3found = true;
work3Group = group;
}
}
}
}
}
}
assertTrue(work1found);
assertTrue(work2found);
assertTrue(work3found);
//Check that work # 1 and Work # 3 are in the same work
assertEquals(work1Group, work3Group);
//Check that work # 2 is not in the same group than group # 1
assertThat(work2Group, not(work1Group));
//Remove all created works
ClientResponse deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode1, accessTokenForClient1);
assertNotNull(deleteResponse);
assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode2, accessTokenForClient1);
assertNotNull(deleteResponse);
assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode3, accessTokenForClient2);
assertNotNull(deleteResponse);
assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
}
use of org.orcid.jaxb.model.record.summary_rc1.WorkSummary in project ORCID-Source by ORCID.
the class OrcidRecordToSolrDocument method convert.
public OrcidSolrDocument convert(Record record, List<Funding> fundings) {
OrcidSolrDocument profileIndexDocument = new OrcidSolrDocument();
profileIndexDocument.setOrcid(record.getOrcidIdentifier().getPath());
if (record.getHistory() != null) {
if (record.getHistory().getLastModifiedDate() != null) {
profileIndexDocument.setProfileLastModifiedDate(record.getHistory().getLastModifiedDate().getValue().toGregorianCalendar().getTime());
}
if (record.getHistory().getSubmissionDate() != null) {
profileIndexDocument.setProfileSubmissionDate(record.getHistory().getSubmissionDate().getValue().toGregorianCalendar().getTime());
}
}
if (record.getDeprecated() != null) {
profileIndexDocument.setPrimaryRecord(record.getDeprecated().getPrimaryRecord() != null ? record.getDeprecated().getPrimaryRecord().getOrcidIdentifier().getPath() : null);
}
if (record.getPerson() != null) {
if (record.getPerson().getName() != null) {
profileIndexDocument.setFamilyName(record.getPerson().getName().getFamilyName() != null ? record.getPerson().getName().getFamilyName().getContent() : null);
profileIndexDocument.setGivenNames(record.getPerson().getName().getGivenNames() != null ? record.getPerson().getName().getGivenNames().getContent() : null);
profileIndexDocument.setCreditName(record.getPerson().getName().getCreditName() != null ? record.getPerson().getName().getCreditName().getContent() : null);
}
if (record.getPerson().getOtherNames() != null) {
if (record.getPerson().getOtherNames().getOtherNames() != null && !record.getPerson().getOtherNames().getOtherNames().isEmpty()) {
List<String> names = new ArrayList<String>();
for (org.orcid.jaxb.model.record_v2.OtherName on : record.getPerson().getOtherNames().getOtherNames()) {
names.add(on.getContent());
}
profileIndexDocument.setOtherNames(names);
}
}
if (record.getPerson().getEmails() != null && record.getPerson().getEmails().getEmails() != null) {
for (org.orcid.jaxb.model.record_v2.Email e : record.getPerson().getEmails().getEmails()) {
profileIndexDocument.addEmailAddress(e.getEmail());
}
}
//weird, the type is not indexed...!
if (record.getPerson().getExternalIdentifiers() != null && record.getPerson().getExternalIdentifiers().getExternalIdentifiers() != null) {
List<String> extIdOrcids = new ArrayList<String>();
List<String> extIdRefs = new ArrayList<String>();
List<String> extIdOrcidsAndRefs = new ArrayList<String>();
for (PersonExternalIdentifier externalIdentifier : record.getPerson().getExternalIdentifiers().getExternalIdentifiers()) {
String sourcePath = null;
if (externalIdentifier.getSource() != null && externalIdentifier.getSource().retrieveSourcePath() != null) {
sourcePath = externalIdentifier.getSource().retrieveSourcePath();
extIdOrcids.add(sourcePath);
}
if (externalIdentifier.getValue() != null) {
//weird, the type is not indexed...!
extIdRefs.add(externalIdentifier.getValue());
}
if (NullUtils.noneNull(sourcePath, externalIdentifier.getValue())) {
extIdOrcidsAndRefs.add(sourcePath + "=" + externalIdentifier.getValue());
}
}
if (!extIdOrcids.isEmpty()) {
profileIndexDocument.setExternalIdSources(extIdOrcids);
}
if (!extIdRefs.isEmpty()) {
profileIndexDocument.setExternalIdReferences(extIdRefs);
}
if (!extIdOrcidsAndRefs.isEmpty()) {
profileIndexDocument.setExternalIdSourcesAndReferences(extIdOrcidsAndRefs);
}
}
//weird, we only index keywords if activities exist...!
if (record.getActivitiesSummary() != null) {
if (record.getPerson().getKeywords() != null && record.getPerson().getKeywords().getKeywords() != null) {
List<String> keywordValues = new ArrayList<String>();
for (org.orcid.jaxb.model.record_v2.Keyword keyword : record.getPerson().getKeywords().getKeywords()) {
keywordValues.add(keyword.getContent());
}
profileIndexDocument.setKeywords(keywordValues);
}
}
if (record.getActivitiesSummary() != null && record.getActivitiesSummary().getWorks() != null && record.getActivitiesSummary().getWorks().getWorkGroup() != null) {
//work ids
Map<String, List<String>> allExternalIdentifiers = new HashMap<String, List<String>>();
Map<String, List<String>> partOf = new HashMap<String, List<String>>();
Map<String, List<String>> self = new HashMap<String, List<String>>();
Set<String> workTitles = new HashSet<String>();
for (WorkGroup wg : record.getActivitiesSummary().getWorks().getWorkGroup()) {
if (wg.getWorkSummary() != null) {
for (WorkSummary w : wg.getWorkSummary()) {
// have to use summaries here as group does not include part-of
if (w.getExternalIdentifiers() != null && w.getExternalIdentifiers().getExternalIdentifier() != null) {
for (ExternalID id : w.getExternalIdentifiers().getExternalIdentifier()) {
//old way
if (!allExternalIdentifiers.containsKey(id.getType())) {
allExternalIdentifiers.put(id.getType(), new ArrayList<String>());
}
if (!allExternalIdentifiers.get(id.getType()).contains(id.getValue())) {
allExternalIdentifiers.get(id.getType()).add(id.getValue());
}
//new way
if (Relationship.SELF.equals(id.getRelationship())) {
if (!self.containsKey(id.getType() + SolrConstants.DYNAMIC_SELF)) {
self.put(id.getType() + SolrConstants.DYNAMIC_SELF, new ArrayList<String>());
}
if (!self.get(id.getType() + SolrConstants.DYNAMIC_SELF).contains(id.getValue())) {
self.get(id.getType() + SolrConstants.DYNAMIC_SELF).add(id.getValue());
}
}
if (Relationship.PART_OF.equals(id.getRelationship())) {
if (!partOf.containsKey(id.getType() + SolrConstants.DYNAMIC_PART_OF)) {
partOf.put(id.getType() + SolrConstants.DYNAMIC_PART_OF, new ArrayList<String>());
}
if (!partOf.get(id.getType() + SolrConstants.DYNAMIC_PART_OF).contains(id.getValue())) {
partOf.get(id.getType() + SolrConstants.DYNAMIC_PART_OF).add(id.getValue());
}
}
}
}
if (w.getTitle() != null) {
if (w.getTitle().getTitle() != null && StringUtils.isNotEmpty(w.getTitle().getTitle().getContent())) {
workTitles.add(w.getTitle().getTitle().getContent());
}
if (w.getTitle().getSubtitle() != null && StringUtils.isNotEmpty(w.getTitle().getSubtitle().getContent())) {
workTitles.add(w.getTitle().getSubtitle().getContent());
}
if (w.getTitle().getTranslatedTitle() != null && StringUtils.isNotEmpty(w.getTitle().getTranslatedTitle().getContent())) {
workTitles.add(w.getTitle().getTranslatedTitle().getContent());
}
}
}
}
}
profileIndexDocument.setSelfIds(self);
profileIndexDocument.setPartOfIds(partOf);
//now add them to the doc, the old way
addExternalIdentifiersToIndexDocument(profileIndexDocument, allExternalIdentifiers);
profileIndexDocument.setWorkTitles(new ArrayList<String>(workTitles));
}
Map<String, List<String>> organisationIds = new HashMap<String, List<String>>();
organisationIds.put(SolrConstants.FUNDREF_ORGANISATION_ID, new ArrayList<String>());
organisationIds.put(SolrConstants.RINGGOLD_ORGANISATION_ID, new ArrayList<String>());
Map<String, List<String>> organisationNames = new HashMap<String, List<String>>();
organisationNames.put(SolrConstants.AFFILIATION_ORGANISATION_NAME, new ArrayList<String>());
organisationNames.put(SolrConstants.FUNDING_ORGANISATION_NAME, new ArrayList<String>());
if (!fundings.isEmpty()) {
Set<String> fundingTitle = new HashSet<String>();
Set<String> fundingGrantNumbers = new HashSet<String>();
for (Funding f : fundings) {
if (f.getTitle() != null) {
if (f.getTitle().getTitle() != null && StringUtils.isNotEmpty(f.getTitle().getTitle().getContent())) {
fundingTitle.add(f.getTitle().getTitle().getContent());
}
if (f.getTitle().getTranslatedTitle() != null && StringUtils.isNotEmpty(f.getTitle().getTranslatedTitle().getContent())) {
fundingTitle.add(f.getTitle().getTranslatedTitle().getContent());
}
}
if (f.getExternalIdentifiers() != null && f.getExternalIdentifiers().getExternalIdentifier() != null) {
for (ExternalID id : f.getExternalIdentifiers().getExternalIdentifier()) {
if (id.getType().equals("grant_number")) {
fundingGrantNumbers.add(id.getValue());
}
}
}
if (f.getOrganization() != null) {
organisationNames.get(SolrConstants.FUNDING_ORGANISATION_NAME).add(f.getOrganization().getName());
if (f.getOrganization().getDisambiguatedOrganization() != null)
organisationIds.get(SolrConstants.FUNDREF_ORGANISATION_ID).add(f.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier());
}
}
profileIndexDocument.setFundingTitles(new ArrayList<String>(fundingTitle));
profileIndexDocument.setGrantNumbers(new ArrayList<String>(fundingGrantNumbers));
}
//now do affiliations
if (record.getActivitiesSummary() != null && record.getActivitiesSummary().getEducations() != null && record.getActivitiesSummary().getEducations().getSummaries() != null) {
for (EducationSummary e : record.getActivitiesSummary().getEducations().getSummaries()) {
if (e.getOrganization() != null) {
organisationNames.get(SolrConstants.AFFILIATION_ORGANISATION_NAME).add(e.getOrganization().getName());
if (e.getOrganization().getDisambiguatedOrganization() != null)
organisationIds.get(SolrConstants.RINGGOLD_ORGANISATION_ID).add(e.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier());
}
}
}
if (record.getActivitiesSummary() != null && record.getActivitiesSummary().getEmployments() != null && record.getActivitiesSummary().getEmployments().getSummaries() != null) {
for (EmploymentSummary e : record.getActivitiesSummary().getEmployments().getSummaries()) {
if (e.getOrganization() != null) {
organisationNames.get(SolrConstants.AFFILIATION_ORGANISATION_NAME).add(e.getOrganization().getName());
if (e.getOrganization().getDisambiguatedOrganization() != null)
organisationIds.get(SolrConstants.RINGGOLD_ORGANISATION_ID).add(e.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier());
}
}
}
profileIndexDocument.setOrganisationIds(organisationIds);
profileIndexDocument.setOrganisationNames(organisationNames);
}
if (indexProfile) {
try {
StringWriter sw = new StringWriter();
jaxbContext_2_0_api.createMarshaller().marshal(record, sw);
profileIndexDocument.setPublicProfileMessage(sw.getBuffer().toString());
} catch (JAXBException e) {
LOG.error("problem marshalling xml", e);
}
}
LOG.debug(profileIndexDocument.toString());
return profileIndexDocument;
}
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