Examples with WorkGroup org.orcid.jaxb.model.record.summary_v2.WorkGroup used on opensource projects

Example 26 with WorkGroup

use of org.orcid.jaxb.model.record.summary_v2.WorkGroup in project ORCID-Source by ORCID.

the class MemberV2Test method testWorksWithPartOfRelationshipDontGetGrouped.

@Test
public void testWorksWithPartOfRelationshipDontGetGrouped() throws JSONException, InterruptedException, URISyntaxException {
    long time = System.currentTimeMillis();
    String accessTokenForClient1 = getAccessToken();
    String accessTokenForClient2 = getAccessToken(getUser1OrcidId(), getUser1Password(), getScopes(), getClient2ClientId(), getClient2ClientSecret(), getClient2RedirectUri());
    Work work1 = (Work) unmarshallFromPath("/record_2.0_rc1/samples/work-2.0_rc1.xml", Work.class);
    work1.setPutCode(null);
    work1.setVisibility(Visibility.PUBLIC);
    work1.getExternalIdentifiers().getExternalIdentifier().clear();
    org.orcid.jaxb.model.record_rc1.WorkTitle title1 = new org.orcid.jaxb.model.record_rc1.WorkTitle();
    title1.setTitle(new Title("Work # 1" + time));
    work1.setWorkTitle(title1);
    WorkExternalIdentifier wExtId1 = new WorkExternalIdentifier();
    wExtId1.setWorkExternalIdentifierId(new WorkExternalIdentifierId("Work Id " + time));
    wExtId1.setWorkExternalIdentifierType(WorkExternalIdentifierType.AGR);
    wExtId1.setRelationship(Relationship.SELF);
    wExtId1.setUrl(new Url("http://orcid.org/work#1"));
    work1.getExternalIdentifiers().getWorkExternalIdentifier().clear();
    work1.getExternalIdentifiers().getWorkExternalIdentifier().add(wExtId1);
    Work work2 = (Work) unmarshallFromPath("/record_2.0_rc1/samples/work-2.0_rc1.xml", Work.class);
    work2.setPutCode(null);
    work2.setVisibility(Visibility.PUBLIC);
    org.orcid.jaxb.model.record_rc1.WorkTitle title2 = new org.orcid.jaxb.model.record_rc1.WorkTitle();
    title2.setTitle(new Title("Work # 2" + time));
    work2.setWorkTitle(title2);
    work2.getExternalIdentifiers().getExternalIdentifier().clear();
    WorkExternalIdentifier wExtId2 = new WorkExternalIdentifier();
    wExtId2.setWorkExternalIdentifierId(new WorkExternalIdentifierId("Work Id " + time));
    wExtId2.setWorkExternalIdentifierType(WorkExternalIdentifierType.AGR);
    wExtId2.setRelationship(Relationship.PART_OF);
    wExtId2.setUrl(new Url("http://orcid.org/work#2"));
    work2.getExternalIdentifiers().getWorkExternalIdentifier().clear();
    work2.getExternalIdentifiers().getWorkExternalIdentifier().add(wExtId2);
    Work work3 = (Work) unmarshallFromPath("/record_2.0_rc1/samples/work-2.0_rc1.xml", Work.class);
    work3.setPutCode(null);
    work3.setVisibility(Visibility.PUBLIC);
    org.orcid.jaxb.model.record_rc1.WorkTitle title3 = new org.orcid.jaxb.model.record_rc1.WorkTitle();
    title3.setTitle(new Title("Work # 3" + time));
    work3.setWorkTitle(title3);
    work3.getExternalIdentifiers().getExternalIdentifier().clear();
    WorkExternalIdentifier wExtId3 = new WorkExternalIdentifier();
    wExtId3.setWorkExternalIdentifierId(new WorkExternalIdentifierId("Work Id " + time));
    wExtId3.setWorkExternalIdentifierType(WorkExternalIdentifierType.AGR);
    wExtId3.setRelationship(Relationship.SELF);
    wExtId3.setUrl(new Url("http://orcid.org/work#3"));
    work3.getExternalIdentifiers().getWorkExternalIdentifier().clear();
    work3.getExternalIdentifiers().getWorkExternalIdentifier().add(wExtId3);
    // Add the three works
    ClientResponse postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work1, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work2, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work3, accessTokenForClient2);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    ClientResponse activitiesResponse = memberV2ApiClient.viewActivities(this.getUser1OrcidId(), accessTokenForClient1);
    assertEquals(Response.Status.OK.getStatusCode(), activitiesResponse.getStatus());
    ActivitiesSummary activities = activitiesResponse.getEntity(ActivitiesSummary.class);
    assertNotNull(activities);
    assertFalse(activities.getWorks().getWorkGroup().isEmpty());
    WorkGroup work1Group = null;
    WorkGroup work2Group = null;
    WorkGroup work3Group = null;
    boolean work1found = false;
    boolean work2found = false;
    boolean work3found = false;
    List<Long> putCodes = new ArrayList<Long>();
    for (WorkGroup group : activities.getWorks().getWorkGroup()) {
        if (group.getIdentifiers().getIdentifier() == null || group.getIdentifiers().getIdentifier().isEmpty()) {
            for (WorkSummary summary : group.getWorkSummary()) {
                String title = summary.getTitle().getTitle().getContent();
                if (("Work # 2" + time).equals(title)) {
                    work2found = true;
                    work2Group = group;
                    putCodes.add(summary.getPutCode());
                }
            }
        } else {
            for (Identifier id : group.getIdentifiers().getIdentifier()) {
                // If it is the ID is the one we are looking for
                if (id.getExternalIdentifierId().equals("Work Id " + time)) {
                    for (WorkSummary summary : group.getWorkSummary()) {
                        String title = summary.getTitle().getTitle().getContent();
                        if (("Work # 1" + time).equals(title)) {
                            work1found = true;
                            work1Group = group;
                            putCodes.add(summary.getPutCode());
                        } else if (("Work # 3" + time).equals(title)) {
                            work3found = true;
                            work3Group = group;
                            putCodes.add(summary.getPutCode());
                        }
                    }
                }
            }
        }
    }
    assertTrue("Work1: " + work1found + " work2 " + work2found + " work3 " + work3found, work1found && work2found && work3found);
    // Check that work # 1 and Work # 3 are in the same work
    assertEquals(work1Group, work3Group);
    // Check that work # 2 is not in the same group than group # 1
    assertThat(work2Group, not(work1Group));
    // Delete all elements created
    for (Long putCode : putCodes) {
        ClientResponse deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode, accessTokenForClient1);
        if (Response.Status.NO_CONTENT.getStatusCode() != deleteResponse.getStatus()) {
            deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode, accessTokenForClient2);
            assertEquals("Cant delete work " + putCode, Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
        }
    }
}

Example 27 with WorkGroup

use of org.orcid.jaxb.model.record.summary_v2.WorkGroup in project ORCID-Source by ORCID.

the class MongoMessageProcessorTest method testInsertAndUpsert.

@Test
public void testInsertAndUpsert() throws LockedRecordException, DeprecatedRecordException {
    Record record = new Record();
    record.setOrcidIdentifier(new OrcidIdentifier("http://orcid.org/" + this.orcid));
    ActivitiesSummary sum = new ActivitiesSummary();
    Works works = new Works();
    WorkGroup group = new WorkGroup();
    WorkSummary work = new WorkSummary();
    WorkTitle title = new WorkTitle();
    title.setTitle(new Title("blah"));
    work.setTitle(title);
    group.getWorkSummary().add(work);
    works.getWorkGroup().add(group);
    sum.setWorks(works);
    record.setActivitiesSummary(sum);
    when(mock_orcid20ApiClient.fetchPublicRecord(Matchers.any())).thenReturn(record);
    LastModifiedMessage m = new LastModifiedMessage(this.orcid, new Date());
    mongo.accept(m);
    // test record inserted (has work, no name)
    Document d = new Document();
    d.put("_id", this.orcid);
    assertEquals(col.count(d), 1);
    FindIterable<Document> it = col.find(d);
    Document found = it.first();
    assertEquals(found.get("orcid-identifier", Document.class).get("path"), "http://orcid.org/" + this.orcid);
    List<Document> groups = (List<Document>) found.get("activities-summary", Document.class).get("works", Document.class).get("group");
    List<Document> sums = (List<Document>) groups.get(0).get("work-summary");
    assertEquals(sums.get(0).get("title", Document.class).get("title", Document.class).get("value"), "blah");
    record.setPerson(new Person());
    record.getPerson().setName(new Name());
    record.getPerson().getName().setCreditName(new CreditName());
    record.getPerson().getName().getCreditName().setContent("name");
    ;
    LastModifiedMessage m2 = new LastModifiedMessage(this.orcid, new Date());
    mongo.accept(m2);
    it = col.find(d);
    found = it.first();
    assertEquals(found.get("person", Document.class).get("name", Document.class).get("credit-name", Document.class).get("value"), "name");
}

Example 28 with WorkGroup

use of org.orcid.jaxb.model.record.summary_v2.WorkGroup in project ORCID-Source by ORCID.

the class OrcidRecordToSolrDocument method convert.

public OrcidSolrDocument convert(Record record, List<Funding> fundings) {
    OrcidSolrDocument profileIndexDocument = new OrcidSolrDocument();
    profileIndexDocument.setOrcid(record.getOrcidIdentifier().getPath());
    if (record.getHistory() != null) {
        if (record.getHistory().getLastModifiedDate() != null) {
            profileIndexDocument.setProfileLastModifiedDate(record.getHistory().getLastModifiedDate().getValue().toGregorianCalendar().getTime());
        }
        if (record.getHistory().getSubmissionDate() != null) {
            profileIndexDocument.setProfileSubmissionDate(record.getHistory().getSubmissionDate().getValue().toGregorianCalendar().getTime());
        }
    }
    if (record.getDeprecated() != null) {
        profileIndexDocument.setPrimaryRecord(record.getDeprecated().getPrimaryRecord() != null ? record.getDeprecated().getPrimaryRecord().getOrcidIdentifier().getPath() : null);
    }
    if (record.getPerson() != null) {
        if (record.getPerson().getName() != null) {
            profileIndexDocument.setFamilyName(record.getPerson().getName().getFamilyName() != null ? record.getPerson().getName().getFamilyName().getContent() : null);
            profileIndexDocument.setGivenNames(record.getPerson().getName().getGivenNames() != null ? record.getPerson().getName().getGivenNames().getContent() : null);
            profileIndexDocument.setCreditName(record.getPerson().getName().getCreditName() != null ? record.getPerson().getName().getCreditName().getContent() : null);
        }
        if (record.getPerson().getOtherNames() != null) {
            if (record.getPerson().getOtherNames().getOtherNames() != null && !record.getPerson().getOtherNames().getOtherNames().isEmpty()) {
                List<String> names = new ArrayList<String>();
                for (org.orcid.jaxb.model.record_v2.OtherName on : record.getPerson().getOtherNames().getOtherNames()) {
                    names.add(on.getContent());
                }
                profileIndexDocument.setOtherNames(names);
            }
        }
        if (record.getPerson().getEmails() != null && record.getPerson().getEmails().getEmails() != null) {
            for (org.orcid.jaxb.model.record_v2.Email e : record.getPerson().getEmails().getEmails()) {
                profileIndexDocument.addEmailAddress(e.getEmail());
            }
        }
        // weird, the type is not indexed...!
        if (record.getPerson().getExternalIdentifiers() != null && record.getPerson().getExternalIdentifiers().getExternalIdentifiers() != null) {
            List<String> extIdOrcids = new ArrayList<String>();
            List<String> extIdRefs = new ArrayList<String>();
            List<String> extIdOrcidsAndRefs = new ArrayList<String>();
            for (PersonExternalIdentifier externalIdentifier : record.getPerson().getExternalIdentifiers().getExternalIdentifiers()) {
                String sourcePath = null;
                if (externalIdentifier.getSource() != null && externalIdentifier.getSource().retrieveSourcePath() != null) {
                    sourcePath = externalIdentifier.getSource().retrieveSourcePath();
                    extIdOrcids.add(sourcePath);
                }
                if (externalIdentifier.getValue() != null) {
                    // weird, the type is not indexed...!
                    extIdRefs.add(externalIdentifier.getValue());
                }
                if (NullUtils.noneNull(sourcePath, externalIdentifier.getValue())) {
                    extIdOrcidsAndRefs.add(sourcePath + "=" + externalIdentifier.getValue());
                }
            }
            if (!extIdOrcids.isEmpty()) {
                profileIndexDocument.setExternalIdSources(extIdOrcids);
            }
            if (!extIdRefs.isEmpty()) {
                profileIndexDocument.setExternalIdReferences(extIdRefs);
            }
            if (!extIdOrcidsAndRefs.isEmpty()) {
                profileIndexDocument.setExternalIdSourcesAndReferences(extIdOrcidsAndRefs);
            }
        }
        // weird, we only index keywords if activities exist...!
        if (record.getActivitiesSummary() != null) {
            if (record.getPerson().getKeywords() != null && record.getPerson().getKeywords().getKeywords() != null) {
                List<String> keywordValues = new ArrayList<String>();
                for (org.orcid.jaxb.model.record_v2.Keyword keyword : record.getPerson().getKeywords().getKeywords()) {
                    keywordValues.add(keyword.getContent());
                }
                profileIndexDocument.setKeywords(keywordValues);
            }
        }
        if (record.getActivitiesSummary() != null && record.getActivitiesSummary().getWorks() != null && record.getActivitiesSummary().getWorks().getWorkGroup() != null) {
            // work ids
            Map<String, List<String>> allExternalIdentifiers = new HashMap<String, List<String>>();
            Map<String, List<String>> partOf = new HashMap<String, List<String>>();
            Map<String, List<String>> self = new HashMap<String, List<String>>();
            Set<String> workTitles = new HashSet<String>();
            for (WorkGroup wg : record.getActivitiesSummary().getWorks().getWorkGroup()) {
                if (wg.getWorkSummary() != null) {
                    for (WorkSummary w : wg.getWorkSummary()) {
                        // have to use summaries here as group does not include part-of
                        if (w.getExternalIdentifiers() != null && w.getExternalIdentifiers().getExternalIdentifier() != null) {
                            for (ExternalID id : w.getExternalIdentifiers().getExternalIdentifier()) {
                                // old way
                                if (!allExternalIdentifiers.containsKey(id.getType())) {
                                    allExternalIdentifiers.put(id.getType(), new ArrayList<String>());
                                }
                                if (!allExternalIdentifiers.get(id.getType()).contains(id.getValue())) {
                                    allExternalIdentifiers.get(id.getType()).add(id.getValue());
                                }
                                // new way
                                if (Relationship.SELF.equals(id.getRelationship())) {
                                    if (!self.containsKey(id.getType() + SolrConstants.DYNAMIC_SELF)) {
                                        self.put(id.getType() + SolrConstants.DYNAMIC_SELF, new ArrayList<String>());
                                    }
                                    if (!self.get(id.getType() + SolrConstants.DYNAMIC_SELF).contains(id.getValue())) {
                                        self.get(id.getType() + SolrConstants.DYNAMIC_SELF).add(id.getValue());
                                    }
                                }
                                if (Relationship.PART_OF.equals(id.getRelationship())) {
                                    if (!partOf.containsKey(id.getType() + SolrConstants.DYNAMIC_PART_OF)) {
                                        partOf.put(id.getType() + SolrConstants.DYNAMIC_PART_OF, new ArrayList<String>());
                                    }
                                    if (!partOf.get(id.getType() + SolrConstants.DYNAMIC_PART_OF).contains(id.getValue())) {
                                        partOf.get(id.getType() + SolrConstants.DYNAMIC_PART_OF).add(id.getValue());
                                    }
                                }
                            }
                        }
                        if (w.getTitle() != null) {
                            if (w.getTitle().getTitle() != null && StringUtils.isNotEmpty(w.getTitle().getTitle().getContent())) {
                                workTitles.add(w.getTitle().getTitle().getContent());
                            }
                            if (w.getTitle().getSubtitle() != null && StringUtils.isNotEmpty(w.getTitle().getSubtitle().getContent())) {
                                workTitles.add(w.getTitle().getSubtitle().getContent());
                            }
                            if (w.getTitle().getTranslatedTitle() != null && StringUtils.isNotEmpty(w.getTitle().getTranslatedTitle().getContent())) {
                                workTitles.add(w.getTitle().getTranslatedTitle().getContent());
                            }
                        }
                    }
                }
            }
            profileIndexDocument.setSelfIds(self);
            profileIndexDocument.setPartOfIds(partOf);
            // now add them to the doc, the old way
            addExternalIdentifiersToIndexDocument(profileIndexDocument, allExternalIdentifiers);
            profileIndexDocument.setWorkTitles(new ArrayList<String>(workTitles));
        }
        Map<String, List<String>> organisationIds = new HashMap<String, List<String>>();
        organisationIds.put(SolrConstants.FUNDREF_ORGANISATION_ID, new ArrayList<String>());
        organisationIds.put(SolrConstants.RINGGOLD_ORGANISATION_ID, new ArrayList<String>());
        organisationIds.put(SolrConstants.GRID_ORGANISATION_ID, new ArrayList<String>());
        Map<String, List<String>> organisationNames = new HashMap<String, List<String>>();
        organisationNames.put(SolrConstants.AFFILIATION_ORGANISATION_NAME, new ArrayList<String>());
        organisationNames.put(SolrConstants.FUNDING_ORGANISATION_NAME, new ArrayList<String>());
        if (!fundings.isEmpty()) {
            Set<String> fundingTitle = new HashSet<String>();
            Set<String> fundingGrantNumbers = new HashSet<String>();
            for (Funding f : fundings) {
                if (f.getTitle() != null) {
                    if (f.getTitle().getTitle() != null && StringUtils.isNotEmpty(f.getTitle().getTitle().getContent())) {
                        fundingTitle.add(f.getTitle().getTitle().getContent());
                    }
                    if (f.getTitle().getTranslatedTitle() != null && StringUtils.isNotEmpty(f.getTitle().getTranslatedTitle().getContent())) {
                        fundingTitle.add(f.getTitle().getTranslatedTitle().getContent());
                    }
                }
                if (f.getExternalIdentifiers() != null && f.getExternalIdentifiers().getExternalIdentifier() != null) {
                    for (ExternalID id : f.getExternalIdentifiers().getExternalIdentifier()) {
                        if (id.getType().equals("grant_number")) {
                            fundingGrantNumbers.add(id.getValue());
                        }
                    }
                }
                if (f.getOrganization() != null) {
                    organisationNames.get(SolrConstants.FUNDING_ORGANISATION_NAME).add(f.getOrganization().getName());
                    if (f.getOrganization().getDisambiguatedOrganization() != null)
                        organisationIds.get(SolrConstants.FUNDREF_ORGANISATION_ID).add(f.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier());
                }
            }
            profileIndexDocument.setFundingTitles(new ArrayList<String>(fundingTitle));
            profileIndexDocument.setGrantNumbers(new ArrayList<String>(fundingGrantNumbers));
        }
        // now do affiliations
        if (record.getActivitiesSummary() != null && record.getActivitiesSummary().getEducations() != null && record.getActivitiesSummary().getEducations().getSummaries() != null) {
            for (EducationSummary e : record.getActivitiesSummary().getEducations().getSummaries()) {
                if (e.getOrganization() != null) {
                    organisationNames.get(SolrConstants.AFFILIATION_ORGANISATION_NAME).add(e.getOrganization().getName());
                    if (e.getOrganization().getDisambiguatedOrganization() != null) {
                        String sourceType = e.getOrganization().getDisambiguatedOrganization().getDisambiguationSource();
                        if (SolrConstants.RINGGOLD_ORG_TYPE.equals(sourceType)) {
                            organisationIds.get(SolrConstants.RINGGOLD_ORGANISATION_ID).add(e.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier());
                        } else if (SolrConstants.GRID_ORG_TYPE.equals(sourceType)) {
                            organisationIds.get(SolrConstants.GRID_ORGANISATION_ID).add(e.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier());
                        }
                    }
                }
            }
        }
        if (record.getActivitiesSummary() != null && record.getActivitiesSummary().getEmployments() != null && record.getActivitiesSummary().getEmployments().getSummaries() != null) {
            for (EmploymentSummary e : record.getActivitiesSummary().getEmployments().getSummaries()) {
                if (e.getOrganization() != null) {
                    organisationNames.get(SolrConstants.AFFILIATION_ORGANISATION_NAME).add(e.getOrganization().getName());
                    if (e.getOrganization().getDisambiguatedOrganization() != null) {
                        String sourceType = e.getOrganization().getDisambiguatedOrganization().getDisambiguationSource();
                        if (SolrConstants.RINGGOLD_ORG_TYPE.equals(sourceType)) {
                            organisationIds.get(SolrConstants.RINGGOLD_ORGANISATION_ID).add(e.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier());
                        } else if (SolrConstants.GRID_ORG_TYPE.equals(sourceType)) {
                            organisationIds.get(SolrConstants.GRID_ORGANISATION_ID).add(e.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier());
                        }
                    }
                }
            }
        }
        profileIndexDocument.setOrganisationIds(organisationIds);
        profileIndexDocument.setOrganisationNames(organisationNames);
    }
    if (indexProfile) {
        try {
            StringWriter sw = new StringWriter();
            jaxbContext_2_0_api.createMarshaller().marshal(record, sw);
            profileIndexDocument.setPublicProfileMessage(sw.getBuffer().toString());
        } catch (JAXBException e) {
            LOG.error("problem marshalling xml", e);
        }
    }
    LOG.debug(profileIndexDocument.toString());
    return profileIndexDocument;
}

Example 29 with WorkGroup

use of org.orcid.jaxb.model.record.summary_v2.WorkGroup in project ORCID-Source by ORCID.

the class BibtexManagerImpl method generateBibtexReferenceList.

@Override
public String generateBibtexReferenceList(String orcid) {
    ActivitiesSummary summary = activitiesManager.getActivitiesSummary(orcid);
    List<String> citations = new ArrayList<String>();
    if (summary.getWorks() != null) {
        for (WorkGroup group : summary.getWorks().getWorkGroup()) {
            WorkSummary workSummary = group.getWorkSummary().get(0);
            Work work = workManager.getWork(orcid, workSummary.getPutCode());
            String bibtex = generateBibtex(orcid, work);
            if (bibtex != null)
                citations.add(bibtex);
        }
    }
    return Joiner.on(",\n").join(citations);
}

Example 30 with WorkGroup

use of org.orcid.jaxb.model.record.summary_v2.WorkGroup in project ORCID-Source by ORCID.

the class ActivityUtilsTest method getWorks.

private Works getWorks() {
    Works x = new Works();
    WorkGroup g = new WorkGroup();
    WorkSummary e = new WorkSummary();
    e.setPutCode(123L);
    g.getWorkSummary().add(e);
    x.getWorkGroup().add(g);
    return x;
}