Examples with Funding org.orcid.jaxb.model.record_rc2.Funding used on opensource projects

Example 16 with Funding

use of org.orcid.jaxb.model.record_rc2.Funding in project ORCID-Source by ORCID.

the class OrcidRecordToSolrDocumentTest method testNonSchemaExternalID.

@Test
public void testNonSchemaExternalID() throws JAXBException {
    //as above, but with PDB identifier
    Record record = getRecord("/v20recordWithPDB.xml");
    OrcidRecordToSolrDocument v20 = new OrcidRecordToSolrDocument(false);
    OrcidSolrDocument v20Doc = v20.convert(record, new ArrayList<Funding>());
    Assert.assertEquals("cite-self", v20Doc.getSelfIds().get("cit-self").get(0));
    Assert.assertEquals("pdb-value-self", v20Doc.getSelfIds().get("pdb-self").get(0));
    Assert.assertEquals("cit-part-of", v20Doc.getPartOfIds().get("cit-part-of").get(0));
    Assert.assertEquals("pdb-value-part-of", v20Doc.getPartOfIds().get("pdb-part-of").get(0));
    Assert.assertTrue(v20Doc.getDigitalObjectIds().containsAll(v20Doc.getSelfIds().get("doi-self")));
    Assert.assertTrue(v20Doc.getSelfIds().get("doi-self").containsAll(v20Doc.getDigitalObjectIds()));
    Assert.assertTrue(v20Doc.getOtherIdentifierType().contains("pdb-value-self"));
    Assert.assertTrue(v20Doc.getOtherIdentifierType().contains("pdb-value-part-of"));
}

Example 17 with Funding

use of org.orcid.jaxb.model.record_rc2.Funding in project ORCID-Source by ORCID.

the class ValidateV2_1IdentifiersTest method testFunding.

@Test
public void testFunding() throws SAXException, IOException, JAXBException, ParserConfigurationException {
    Funding funding = unmarshallFromPath("/record_2.1/samples/read_samples/funding-2.1.xml", Funding.class);
    assertEquals("funding:organization-defined-type", funding.getOrganizationDefinedType().getContent());
    assertNotNull(funding.getExternalIdentifiers());
    assertNotNull(funding.getExternalIdentifiers().getExternalIdentifier());
    Assert.notEmpty(funding.getExternalIdentifiers().getExternalIdentifier());
    assertEquals("grant_number", funding.getExternalIdentifiers().getExternalIdentifier().get(0).getType());
    assertEquals("funding:external-identifier-value", funding.getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
    assertEquals(new Url("http://tempuri.org"), funding.getExternalIdentifiers().getExternalIdentifier().get(0).getUrl());
    assertEquals(Relationship.SELF, funding.getExternalIdentifiers().getExternalIdentifier().get(0).getRelationship());
    Validator validator = getValidator("funding");
    validator.validate(marshall(Funding.class, funding));
    validator.validate(marshallToDOM(Funding.class, funding));
}

Example 18 with Funding

use of org.orcid.jaxb.model.record_rc2.Funding in project ORCID-Source by ORCID.

the class PublicV2ApiServiceDelegatorImpl method viewFunding.

@Override
public Response viewFunding(String orcid, Long putCode) {
    Funding f = profileFundingManagerReadOnly.getFunding(orcid, putCode);
    publicAPISecurityManagerV2.checkIsPublic(f);
    ActivityUtils.setPathToActivity(f, orcid);
    sourceUtilsReadOnly.setSourceName(f);
    contributorUtilsReadOnly.filterContributorPrivateData(f);
    return Response.ok(f).build();
}

Example 19 with Funding

use of org.orcid.jaxb.model.record_rc2.Funding in project ORCID-Source by ORCID.

the class OrcidInfo method publicPreview.

@RequestMapping(value = { "/{orcid:(?:\\d{4}-){3,}\\d{3}[\\dX]}", "/{orcid:(?:\\d{4}-){3,}\\d{3}[\\dX]}/print" })
public ModelAndView publicPreview(HttpServletRequest request, @RequestParam(value = "page", defaultValue = "1") int pageNo, @RequestParam(value = "v", defaultValue = "0") int v, @RequestParam(value = "maxResults", defaultValue = "15") int maxResults, @PathVariable("orcid") String orcid) {
    ProfileEntity profile = null;
    try {
        profile = profileEntityCacheManager.retrieve(orcid);
    } catch (Exception e) {
        return new ModelAndView("error-404");
    }
    try {
        // Check if the profile is deprecated, non claimed or locked
        orcidSecurityManager.checkProfile(orcid);
    } catch (OrcidDeprecatedException | OrcidNotClaimedException | LockedException e) {
        ModelAndView mav = new ModelAndView("public_profile_unavailable");
        mav.addObject("effectiveUserOrcid", orcid);
        String displayName = "";
        if (e instanceof OrcidDeprecatedException) {
            PersonalDetails publicPersonalDetails = personalDetailsManager.getPublicPersonalDetails(orcid);
            if (publicPersonalDetails.getName() != null) {
                Name name = publicPersonalDetails.getName();
                if (name.getVisibility().equals(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC)) {
                    if (name.getCreditName() != null && !PojoUtil.isEmpty(name.getCreditName().getContent())) {
                        displayName = name.getCreditName().getContent();
                    } else {
                        if (name.getGivenNames() != null && !PojoUtil.isEmpty(name.getGivenNames().getContent())) {
                            displayName = name.getGivenNames().getContent() + " ";
                        }
                        if (name.getFamilyName() != null && !PojoUtil.isEmpty(name.getFamilyName().getContent())) {
                            displayName += name.getFamilyName().getContent();
                        }
                    }
                }
            }
            mav.addObject("deprecated", true);
            mav.addObject("primaryRecord", profile.getPrimaryRecord().getId());
        } else if (e instanceof OrcidNotClaimedException) {
            displayName = localeManager.resolveMessage("orcid.reserved_for_claim");
        } else {
            mav.addObject("locked", true);
            mav.addObject("isPublicProfile", true);
            displayName = localeManager.resolveMessage("public_profile.deactivated.given_names") + " " + localeManager.resolveMessage("public_profile.deactivated.family_name");
        }
        if (!PojoUtil.isEmpty(displayName)) {
            mav.addObject("title", getMessage("layout.public-layout.title", displayName, orcid));
            mav.addObject("displayName", displayName);
        }
        return mav;
    }
    long lastModifiedTime = getLastModifiedTime(orcid);
    ModelAndView mav = null;
    if (request.getRequestURI().contains("/print")) {
        mav = new ModelAndView("print_public_record");
        mav.addObject("hideUserVoiceScript", true);
    } else {
        mav = new ModelAndView("public_profile_v3");
    }
    mav.addObject("isPublicProfile", true);
    mav.addObject("effectiveUserOrcid", orcid);
    mav.addObject("lastModifiedTime", lastModifiedTime);
    boolean isProfileEmtpy = true;
    HttpSession session = request.getSession(false);
    if (session != null) {
        session.removeAttribute(PUBLIC_WORKS_RESULTS_ATTRIBUTE);
    }
    PersonalDetails publicPersonalDetails = personalDetailsManager.getPublicPersonalDetails(orcid);
    // Fill personal details
    if (publicPersonalDetails != null) {
        // Get display name
        String displayName = "";
        if (publicPersonalDetails.getName() != null) {
            Name name = publicPersonalDetails.getName();
            if (name.getVisibility().equals(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC)) {
                if (name.getCreditName() != null && !PojoUtil.isEmpty(name.getCreditName().getContent())) {
                    displayName = name.getCreditName().getContent();
                } else {
                    if (name.getGivenNames() != null && !PojoUtil.isEmpty(name.getGivenNames().getContent())) {
                        displayName = name.getGivenNames().getContent() + " ";
                    }
                    if (name.getFamilyName() != null && !PojoUtil.isEmpty(name.getFamilyName().getContent())) {
                        displayName += name.getFamilyName().getContent();
                    }
                }
            }
        }
        if (!PojoUtil.isEmpty(displayName)) {
            // <Published Name> (<ORCID iD>) - ORCID | Connecting Research
            // and Researchers
            mav.addObject("title", getMessage("layout.public-layout.title", displayName.trim(), orcid));
            mav.addObject("displayName", displayName);
        }
        // Get biography
        if (publicPersonalDetails.getBiography() != null) {
            Biography bio = publicPersonalDetails.getBiography();
            if (org.orcid.jaxb.model.common_v2.Visibility.PUBLIC.equals(bio.getVisibility()) && !PojoUtil.isEmpty(bio.getContent())) {
                isProfileEmtpy = false;
                mav.addObject("biography", bio);
            }
        }
        // Fill other names
        OtherNames publicOtherNames = publicPersonalDetails.getOtherNames();
        if (publicOtherNames != null && publicOtherNames.getOtherNames() != null) {
            Iterator<OtherName> it = publicOtherNames.getOtherNames().iterator();
            while (it.hasNext()) {
                OtherName otherName = it.next();
                if (!org.orcid.jaxb.model.common_v2.Visibility.PUBLIC.equals(otherName.getVisibility())) {
                    it.remove();
                }
            }
        }
        Map<String, List<OtherName>> groupedOtherNames = groupOtherNames(publicOtherNames);
        mav.addObject("publicGroupedOtherNames", groupedOtherNames);
    }
    // Fill biography elements
    // Fill country
    Addresses publicAddresses = addressManager.getPublicAddresses(orcid, lastModifiedTime);
    Map<String, String> countryNames = new HashMap<String, String>();
    if (publicAddresses != null && publicAddresses.getAddress() != null) {
        Address publicAddress = null;
        // The primary address will be the one with the lowest display index
        for (Address address : publicAddresses.getAddress()) {
            countryNames.put(address.getCountry().getValue().value(), getcountryName(address.getCountry().getValue().value()));
            if (publicAddress == null) {
                publicAddress = address;
            }
        }
        if (publicAddress != null) {
            mav.addObject("publicAddress", publicAddress);
            mav.addObject("countryNames", countryNames);
            Map<String, List<Address>> groupedAddresses = groupAddresses(publicAddresses);
            mav.addObject("publicGroupedAddresses", groupedAddresses);
        }
    }
    // Fill keywords
    Keywords publicKeywords = keywordManager.getPublicKeywords(orcid, lastModifiedTime);
    Map<String, List<Keyword>> groupedKeywords = groupKeywords(publicKeywords);
    mav.addObject("publicGroupedKeywords", groupedKeywords);
    // Fill researcher urls
    ResearcherUrls publicResearcherUrls = researcherUrlManager.getPublicResearcherUrls(orcid, lastModifiedTime);
    Map<String, List<ResearcherUrl>> groupedResearcherUrls = groupResearcherUrls(publicResearcherUrls);
    mav.addObject("publicGroupedResearcherUrls", groupedResearcherUrls);
    // Fill emails
    Emails publicEmails = emailManager.getPublicEmails(orcid, lastModifiedTime);
    Map<String, List<Email>> groupedEmails = groupEmails(publicEmails);
    mav.addObject("publicGroupedEmails", groupedEmails);
    // Fill external identifiers
    PersonExternalIdentifiers publicPersonExternalIdentifiers = externalIdentifierManager.getPublicExternalIdentifiers(orcid, lastModifiedTime);
    Map<String, List<PersonExternalIdentifier>> groupedExternalIdentifiers = groupExternalIdentifiers(publicPersonExternalIdentifiers);
    mav.addObject("publicGroupedPersonExternalIdentifiers", groupedExternalIdentifiers);
    LinkedHashMap<Long, WorkForm> minimizedWorksMap = new LinkedHashMap<>();
    LinkedHashMap<Long, Affiliation> affiliationMap = new LinkedHashMap<>();
    LinkedHashMap<Long, Funding> fundingMap = new LinkedHashMap<>();
    LinkedHashMap<Long, PeerReview> peerReviewMap = new LinkedHashMap<>();
    minimizedWorksMap = activityCacheManager.pubMinWorksMap(orcid, lastModifiedTime);
    if (minimizedWorksMap.size() > 0) {
        isProfileEmtpy = false;
    } else {
        mav.addObject("worksEmpty", true);
    }
    affiliationMap = affiliationMap(orcid, lastModifiedTime);
    if (affiliationMap.size() > 0) {
        isProfileEmtpy = false;
    } else {
        mav.addObject("affiliationsEmpty", true);
    }
    fundingMap = fundingMap(orcid, lastModifiedTime);
    if (fundingMap.size() > 0)
        isProfileEmtpy = false;
    else {
        mav.addObject("fundingEmpty", true);
    }
    peerReviewMap = peerReviewMap(orcid, lastModifiedTime);
    if (peerReviewMap.size() > 0) {
        isProfileEmtpy = false;
    } else {
        mav.addObject("peerReviewsEmpty", true);
    }
    ObjectMapper mapper = new ObjectMapper();
    try {
        String worksIdsJson = mapper.writeValueAsString(minimizedWorksMap.keySet());
        String affiliationIdsJson = mapper.writeValueAsString(affiliationMap.keySet());
        String fundingIdsJson = mapper.writeValueAsString(fundingMap.keySet());
        String peerReviewIdsJson = mapper.writeValueAsString(peerReviewMap.keySet());
        mav.addObject("workIdsJson", StringEscapeUtils.escapeEcmaScript(worksIdsJson));
        mav.addObject("affiliationIdsJson", StringEscapeUtils.escapeEcmaScript(affiliationIdsJson));
        mav.addObject("fundingIdsJson", StringEscapeUtils.escapeEcmaScript(fundingIdsJson));
        mav.addObject("peerReviewIdsJson", StringEscapeUtils.escapeEcmaScript(peerReviewIdsJson));
        mav.addObject("isProfileEmpty", isProfileEmtpy);
    } catch (JsonGenerationException e) {
        e.printStackTrace();
    } catch (JsonMappingException e) {
        e.printStackTrace();
    } catch (IOException e) {
        e.printStackTrace();
    }
    if (!profile.isReviewed()) {
        if (isProfileValidForIndex(profile)) {
            int countTokens = orcidOauth2TokenService.findCountByUserName(orcid, lastModifiedTime);
            if (!profile.isAccountNonLocked() || countTokens == 0 || (!CreationMethod.WEBSITE.value().equals(profile.getCreationMethod()) && !CreationMethod.DIRECT.value().equals(profile.getCreationMethod()))) {
                mav.addObject("noIndex", true);
            }
        } else {
            mav.addObject("noIndex", true);
        }
    }
    return mav;
}

Example 20 with Funding

use of org.orcid.jaxb.model.record_rc2.Funding in project ORCID-Source by ORCID.

the class MapperFacadeFactory method getFundingMapperFacade.

public MapperFacade getFundingMapperFacade() {
    MapperFactory mapperFactory = new DefaultMapperFactory.Builder().build();
    ConverterFactory converterFactory = mapperFactory.getConverterFactory();
    converterFactory.registerConverter("fundingExternalIdentifiersConverterId", new FundingExternalIDsConverter());
    converterFactory.registerConverter("fundingContributorsConverterId", new JsonOrikaConverter<FundingContributors>());
    ClassMapBuilder<Funding, ProfileFundingEntity> fundingClassMap = mapperFactory.classMap(Funding.class, ProfileFundingEntity.class);
    addV2CommonFields(fundingClassMap);
    registerSourceConverters(mapperFactory, fundingClassMap);
    fundingClassMap.field("type", "type");
    fundingClassMap.field("organizationDefinedType.content", "organizationDefinedType");
    fundingClassMap.field("title.title.content", "title");
    fundingClassMap.field("title.translatedTitle.content", "translatedTitle");
    fundingClassMap.field("title.translatedTitle.languageCode", "translatedTitleLanguageCode");
    fundingClassMap.field("description", "description");
    fundingClassMap.field("amount.content", "numericAmount");
    fundingClassMap.field("amount.currencyCode", "currencyCode");
    fundingClassMap.field("url.value", "url");
    fundingClassMap.fieldBToA("org.name", "organization.name");
    fundingClassMap.fieldBToA("org.city", "organization.address.city");
    fundingClassMap.fieldBToA("org.region", "organization.address.region");
    fundingClassMap.fieldBToA("org.country", "organization.address.country");
    fundingClassMap.fieldBToA("org.orgDisambiguated.sourceId", "organization.disambiguatedOrganization.disambiguatedOrganizationIdentifier");
    fundingClassMap.fieldBToA("org.orgDisambiguated.sourceType", "organization.disambiguatedOrganization.disambiguationSource");
    fundingClassMap.fieldBToA("org.orgDisambiguated.id", "organization.disambiguatedOrganization.id");
    fundingClassMap.fieldMap("externalIdentifiers", "externalIdentifiersJson").converter("fundingExternalIdentifiersConverterId").add();
    fundingClassMap.fieldMap("contributors", "contributorsJson").converter("fundingContributorsConverterId").add();
    fundingClassMap.register();
    ClassMapBuilder<FundingSummary, ProfileFundingEntity> fundingSummaryClassMap = mapperFactory.classMap(FundingSummary.class, ProfileFundingEntity.class);
    addV2CommonFields(fundingSummaryClassMap);
    registerSourceConverters(mapperFactory, fundingSummaryClassMap);
    fundingSummaryClassMap.field("type", "type");
    fundingSummaryClassMap.field("title.title.content", "title");
    fundingSummaryClassMap.field("title.translatedTitle.content", "translatedTitle");
    fundingSummaryClassMap.field("title.translatedTitle.languageCode", "translatedTitleLanguageCode");
    fundingSummaryClassMap.fieldMap("externalIdentifiers", "externalIdentifiersJson").converter("fundingExternalIdentifiersConverterId").add();
    fundingSummaryClassMap.fieldBToA("org.name", "organization.name");
    fundingSummaryClassMap.fieldBToA("org.city", "organization.address.city");
    fundingSummaryClassMap.fieldBToA("org.region", "organization.address.region");
    fundingSummaryClassMap.fieldBToA("org.country", "organization.address.country");
    fundingSummaryClassMap.fieldBToA("org.orgDisambiguated.sourceId", "organization.disambiguatedOrganization.disambiguatedOrganizationIdentifier");
    fundingSummaryClassMap.fieldBToA("org.orgDisambiguated.sourceType", "organization.disambiguatedOrganization.disambiguationSource");
    fundingSummaryClassMap.fieldBToA("org.orgDisambiguated.id", "organization.disambiguatedOrganization.id");
    fundingSummaryClassMap.register();
    mapperFactory.classMap(FuzzyDate.class, StartDateEntity.class).field("year.value", "year").field("month.value", "month").field("day.value", "day").register();
    mapperFactory.classMap(FuzzyDate.class, EndDateEntity.class).field("year.value", "year").field("month.value", "month").field("day.value", "day").register();
    return mapperFactory.getMapperFacade();
}