Examples with Biography org.orcid.jaxb.model.record_rc3.Biography used on opensource projects

Example 36 with Biography

use of org.orcid.jaxb.model.record_rc3.Biography in project ORCID-Source by ORCID.

the class ValidateV2RC2SamplesTest method unmarshallFromPath.

private Object unmarshallFromPath(String path, Class<?> type, String schemaPath) throws SAXException, URISyntaxException {
    try (Reader reader = new InputStreamReader(getClass().getResourceAsStream(path))) {
        Object obj = unmarshall(reader, type, schemaPath);
        Object result = null;
        if (ResearcherUrls.class.equals(type)) {
            result = (ResearcherUrls) obj;
        } else if (ResearcherUrl.class.equals(type)) {
            result = (ResearcherUrl) obj;
        } else if (PersonalDetails.class.equals(type)) {
            result = (PersonalDetails) obj;
        } else if (PersonExternalIdentifier.class.equals(type)) {
            result = (PersonExternalIdentifier) obj;
        } else if (PersonExternalIdentifiers.class.equals(type)) {
            result = (PersonExternalIdentifiers) obj;
        } else if (Biography.class.equals(type)) {
            result = (Biography) obj;
        } else if (Name.class.equals(type)) {
            result = (Name) obj;
        } else if (CreditName.class.equals(type)) {
            result = (CreditName) obj;
        } else if (OtherName.class.equals(type)) {
            result = (OtherName) obj;
        } else if (OtherNames.class.equals(type)) {
            result = (OtherNames) obj;
        } else if (Keywords.class.equals(type)) {
            result = (Keywords) obj;
        } else if (Keyword.class.equals(type)) {
            result = (Keyword) obj;
        } else if (Addresses.class.equals(type)) {
            result = (Addresses) obj;
        } else if (Address.class.equals(type)) {
            result = (Address) obj;
        } else if (Emails.class.equals(type)) {
            result = (Emails) obj;
        } else if (Email.class.equals(type)) {
            result = (Email) obj;
        } else if (Person.class.equals(type)) {
            result = (Person) obj;
        } else if (Deprecated.class.equals(type)) {
            result = (Deprecated) obj;
        } else if (Preferences.class.equals(type)) {
            result = (Preferences) obj;
        } else if (History.class.equals(type)) {
            result = (History) obj;
        } else if (Record.class.equals(type)) {
            result = (Record) obj;
        } else if (ActivitiesSummary.class.equals(type)) {
            result = (ActivitiesSummary) obj;
        }
        return result;
    } catch (IOException e) {
        throw new RuntimeException("Error reading notification from classpath", e);
    }
}

Example 37 with Biography

use of org.orcid.jaxb.model.record_rc3.Biography in project ORCID-Source by ORCID.

the class ValidateV2RC2SamplesTest method testMarshallBiography.

@Test
public void testMarshallBiography() throws JAXBException, SAXException, URISyntaxException {
    Biography object = (Biography) unmarshallFromPath("/record_2.0_rc2/samples/biography-2.0_rc2.xml", Biography.class);
    marshall(object, "/record_2.0_rc2/personal-details-2.0_rc2.xsd");
}

Example 38 with Biography

use of org.orcid.jaxb.model.record_rc3.Biography in project ORCID-Source by ORCID.

the class MemberV2ApiServiceDelegatorImpl method viewBiography.

@Override
public Response viewBiography(String orcid) {
    Biography bio = biographyManagerReadOnly.getBiography(orcid, getLastModifiedTime(orcid));
    if (bio == null) {
        throw new OrcidNoBioException();
    }
    orcidSecurityManager.checkAndFilter(orcid, bio, ScopePathType.ORCID_BIO_READ_LIMITED);
    ElementUtils.setPathToBiography(bio, orcid);
    return Response.ok(bio).build();
}

Example 39 with Biography

use of org.orcid.jaxb.model.record_rc3.Biography in project ORCID-Source by ORCID.

the class ProfileEntityManagerImpl method deprecateProfile.

/**
     * Deprecates a profile
     * 
     * @param deprecatedProfile
     *            The profile that want to be deprecated
     * @param primaryProfile
     *            The primary profile for the deprecated profile
     * @return true if the account was successfully deprecated, false otherwise
     */
@Override
@Transactional
public boolean deprecateProfile(String deprecatedOrcid, String primaryOrcid) {
    boolean wasDeprecated = profileDao.deprecateProfile(deprecatedOrcid, primaryOrcid);
    // If it was successfully deprecated
    if (wasDeprecated) {
        LOGGER.info("Account {} was deprecated to primary account: {}", deprecatedOrcid, primaryOrcid);
        ProfileEntity deprecated = profileDao.find(deprecatedOrcid);
        // Remove works
        workManager.removeAllWorks(deprecatedOrcid);
        // Remove funding
        if (deprecated.getProfileFunding() != null) {
            for (ProfileFundingEntity funding : deprecated.getProfileFunding()) {
                fundingManager.removeProfileFunding(funding.getProfile().getId(), funding.getId());
            }
        }
        // Remove affiliations
        if (deprecated.getOrgAffiliationRelations() != null) {
            for (OrgAffiliationRelationEntity affiliation : deprecated.getOrgAffiliationRelations()) {
                orgAffiliationRelationDao.removeOrgAffiliationRelation(affiliation.getProfile().getId(), affiliation.getId());
            }
        }
        // Remove external identifiers
        if (deprecated.getExternalIdentifiers() != null) {
            for (ExternalIdentifierEntity externalIdentifier : deprecated.getExternalIdentifiers()) {
                externalIdentifierManager.deleteExternalIdentifier(deprecated.getId(), externalIdentifier.getId(), false);
            }
        }
        // Remove researcher urls
        if (deprecated.getResearcherUrls() != null) {
            for (ResearcherUrlEntity rUrl : deprecated.getResearcherUrls()) {
                researcherUrlManager.deleteResearcherUrl(deprecatedOrcid, rUrl.getId(), false);
            }
        }
        // Remove other names
        if (deprecated.getOtherNames() != null) {
            for (OtherNameEntity otherName : deprecated.getOtherNames()) {
                otherNamesManager.deleteOtherName(deprecatedOrcid, otherName.getId(), false);
            }
        }
        // Remove keywords
        if (deprecated.getKeywords() != null) {
            for (ProfileKeywordEntity keyword : deprecated.getKeywords()) {
                profileKeywordManager.deleteKeyword(deprecatedOrcid, keyword.getId(), false);
            }
        }
        //Remove biography                        
        if (biographyManager.exists(deprecatedOrcid)) {
            Biography deprecatedBio = new Biography();
            deprecatedBio.setContent(null);
            deprecatedBio.setVisibility(Visibility.PRIVATE);
            biographyManager.updateBiography(deprecatedOrcid, deprecatedBio);
        }
        //Set the deactivated names
        if (recordNameManager.exists(deprecatedOrcid)) {
            Name name = new Name();
            name.setCreditName(new CreditName());
            name.setGivenNames(new GivenNames("Given Names Deactivated"));
            name.setFamilyName(new FamilyName("Family Name Deactivated"));
            name.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.PRIVATE);
            name.setPath(deprecatedOrcid);
            recordNameManager.updateRecordName(deprecatedOrcid, name);
        }
        userConnectionDao.deleteByOrcid(deprecatedOrcid);
        // Move all emails to the primary email
        Set<EmailEntity> deprecatedAccountEmails = deprecated.getEmails();
        if (deprecatedAccountEmails != null) {
            // For each email in the deprecated profile                            
            for (EmailEntity email : deprecatedAccountEmails) {
                // Delete each email from the deprecated
                // profile
                LOGGER.info("About to move email {} from profile {} to profile {}", new Object[] { email.getId(), deprecatedOrcid, primaryOrcid });
                emailManager.moveEmailToOtherAccount(email.getId(), deprecatedOrcid, primaryOrcid);
            }
        }
        return true;
    }
    return false;
}

Example 40 with Biography

use of org.orcid.jaxb.model.record_rc3.Biography in project ORCID-Source by ORCID.

the class OrcidSecurityManager_generalTest method testPersonalDetails_When_SomePrivate_ReadPublicToken.

@Test
public void testPersonalDetails_When_SomePrivate_ReadPublicToken() {
    SecurityContextTestUtils.setUpSecurityContext(ORCID_1, CLIENT_1, ScopePathType.READ_PUBLIC);
    Name name = createName(Visibility.PUBLIC);
    Biography bio = createBiography(Visibility.PRIVATE);
    OtherName o1 = createOtherName(Visibility.PRIVATE, CLIENT_2);
    OtherName o2 = createOtherName(Visibility.PRIVATE, CLIENT_2);
    OtherName o3 = createOtherName(Visibility.PUBLIC, CLIENT_2);
    OtherNames otherNames = new OtherNames();
    otherNames.setOtherNames(new ArrayList<OtherName>(Arrays.asList(o1, o2, o3)));
    PersonalDetails p = new PersonalDetails();
    p.setBiography(bio);
    p.setName(name);
    p.setOtherNames(otherNames);
    orcidSecurityManager.checkAndFilter(ORCID_1, p);
    assertNotNull(p);
    assertEquals(name, p.getName());
    assertNull(p.getBiography());
    assertNotNull(p.getOtherNames());
    assertNotNull(p.getOtherNames().getOtherNames());
    assertEquals(1, p.getOtherNames().getOtherNames().size());
    assertFalse(p.getOtherNames().getOtherNames().contains(o1));
    assertFalse(p.getOtherNames().getOtherNames().contains(o2));
    assertTrue(p.getOtherNames().getOtherNames().contains(o3));
}