Examples with ExternalID org.orcid.jaxb.model.record_rc4.ExternalID used on opensource projects

Example 41 with ExternalID

use of org.orcid.jaxb.model.record_rc4.ExternalID in project ORCID-Source by ORCID.

the class MemberV2Test method createViewUpdateAndDeletePeerReview.

@Test
public void createViewUpdateAndDeletePeerReview() throws JSONException, InterruptedException, URISyntaxException {
    long time = System.currentTimeMillis();
    PeerReview peerReviewToCreate = (PeerReview) unmarshallFromPath("/record_2.0/samples/read_samples/peer-review-2.0.xml", PeerReview.class);
    peerReviewToCreate.setPutCode(null);
    peerReviewToCreate.setGroupId(groupRecords.get(0).getGroupId());
    peerReviewToCreate.getExternalIdentifiers().getExternalIdentifier().clear();
    ExternalID wExtId = new ExternalID();
    wExtId.setValue("Work Id " + time);
    wExtId.setType(WorkExternalIdentifierType.AGR.value());
    wExtId.setRelationship(Relationship.SELF);
    peerReviewToCreate.getExternalIdentifiers().getExternalIdentifier().add(wExtId);
    String accessToken = getAccessToken();
    ClientResponse postResponse = memberV2ApiClient.createPeerReviewXml(this.getUser1OrcidId(), peerReviewToCreate, accessToken);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    String locationPath = postResponse.getLocation().getPath();
    assertTrue("Location header path should match pattern, but was " + locationPath, locationPath.matches(".*/v2.0/" + this.getUser1OrcidId() + "/peer-review/\\d+"));
    ClientResponse getResponse = memberV2ApiClient.viewLocationXml(postResponse.getLocation(), accessToken);
    assertEquals(Response.Status.OK.getStatusCode(), getResponse.getStatus());
    PeerReview gotPeerReview = getResponse.getEntity(PeerReview.class);
    assertEquals("peer-review:url", gotPeerReview.getUrl().getValue());
    assertEquals("peer-review:subject-name", gotPeerReview.getSubjectName().getTitle().getContent());
    assertEquals(groupRecords.get(0).getGroupId(), gotPeerReview.getGroupId());
    //Save the original visibility
    Visibility originalVisibility = gotPeerReview.getVisibility();
    Visibility updatedVisibility = Visibility.PRIVATE.equals(originalVisibility) ? Visibility.LIMITED : Visibility.PRIVATE;
    //Verify you cant update the visibility
    gotPeerReview.setVisibility(updatedVisibility);
    ClientResponse putResponse = memberV2ApiClient.updateLocationXml(postResponse.getLocation(), accessToken, gotPeerReview);
    assertEquals(Response.Status.FORBIDDEN.getStatusCode(), putResponse.getStatus());
    OrcidError error = putResponse.getEntity(OrcidError.class);
    assertNotNull(error);
    assertEquals(Integer.valueOf(9035), error.getErrorCode());
    //Set the visibility again to the initial one
    gotPeerReview.setVisibility(originalVisibility);
    gotPeerReview.getSubjectName().getTitle().setContent("updated title");
    putResponse = memberV2ApiClient.updateLocationXml(postResponse.getLocation(), accessToken, gotPeerReview);
    assertEquals(Response.Status.OK.getStatusCode(), putResponse.getStatus());
    ClientResponse getAfterUpdateResponse = memberV2ApiClient.viewLocationXml(postResponse.getLocation(), accessToken);
    assertEquals(Response.Status.OK.getStatusCode(), getAfterUpdateResponse.getStatus());
    PeerReview gotAfterUpdateWork = getAfterUpdateResponse.getEntity(PeerReview.class);
    assertEquals("updated title", gotAfterUpdateWork.getSubjectName().getTitle().getContent());
    assertEquals(groupRecords.get(0).getGroupId(), gotAfterUpdateWork.getGroupId());
    ClientResponse deleteResponse = memberV2ApiClient.deletePeerReviewXml(this.getUser1OrcidId(), gotAfterUpdateWork.getPutCode(), accessToken);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
}

Example 42 with ExternalID

use of org.orcid.jaxb.model.record_rc4.ExternalID in project ORCID-Source by ORCID.

the class ValidateV2RC3Identifiers method testPeerReview.

/** Test both types of identifier here
     * 
     * @throws SAXException
     * @throws IOException
     * @throws JAXBException
     * @throws ParserConfigurationException
     */
@Test
public void testPeerReview() throws SAXException, IOException, JAXBException, ParserConfigurationException {
    PeerReview peerReview = unmarshallFromPath("/record_2.0_rc3/samples/peer-review-2.0_rc3.xml", PeerReview.class);
    ExternalID id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    ExternalID subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
    Validator validator = getValidator("peer-review");
    validator.validate(marshall(PeerReview.class, peerReview));
    validator.validate(marshallToDOM(PeerReview.class, peerReview));
    //do the full record too
    peerReview = unmarshallFromPath("/record_2.0_rc3/samples/peer-review-full-2.0_rc3.xml", PeerReview.class);
    id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
}

Example 43 with ExternalID

use of org.orcid.jaxb.model.record_rc4.ExternalID in project ORCID-Source by ORCID.

the class ValidateV2IdentifiersTest method testWork.

/**
     * <common:external-ids>
                <common:external-id>
                        <common:external-id-type>agr</common:external-id-type>
                        <common:external-id-value>work:external-identifier-id</common:external-id-value>                        
                        <common:external-id-url>http://orcid.org</common:external-id-url>
                        <common:external-id-relationship>self</common:external-id-relationship>
                </common:external-id>
        </common:external-ids>
        
     * @throws SAXException
     * @throws IOException
     * @throws JAXBException
     * @throws ParserConfigurationException
     */
@Test
public void testWork() throws SAXException, IOException, JAXBException, ParserConfigurationException {
    Work work = unmarshallFromPath("/record_2.0/samples/read_samples/work-2.0.xml", Work.class);
    ExternalID id = work.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("agr", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    Validator validator = getValidator("work");
    validator.validate(marshall(Work.class, work));
    validator.validate(marshallToDOM(Work.class, work));
    work = unmarshallFromPath("/record_2.0/samples/read_samples/work-full-2.0.xml", Work.class);
    id = work.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("agr", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    validator.validate(marshall(Work.class, work));
    validator.validate(marshallToDOM(Work.class, work));
}

Example 44 with ExternalID

use of org.orcid.jaxb.model.record_rc4.ExternalID in project ORCID-Source by ORCID.

the class ValidateV2IdentifiersTest method testPeerReview.

/** Test both types of identifier here
     * 
     * @throws SAXException
     * @throws IOException
     * @throws JAXBException
     * @throws ParserConfigurationException
     */
@Test
public void testPeerReview() throws SAXException, IOException, JAXBException, ParserConfigurationException {
    PeerReview peerReview = unmarshallFromPath("/record_2.0/samples/read_samples/peer-review-2.0.xml", PeerReview.class);
    ExternalID id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    ExternalID subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
    Validator validator = getValidator("peer-review");
    validator.validate(marshall(PeerReview.class, peerReview));
    validator.validate(marshallToDOM(PeerReview.class, peerReview));
    //do the full record too
    peerReview = unmarshallFromPath("/record_2.0/samples/read_samples/peer-review-full-2.0.xml", PeerReview.class);
    id = peerReview.getExternalIdentifiers().getExternalIdentifier().get(0);
    assertEquals("source-work-id", id.getType());
    assertEquals("work:external-identifier-id", id.getValue());
    assertEquals(new Url("http://orcid.org"), id.getUrl());
    assertEquals(Relationship.SELF, id.getRelationship());
    subjectid = peerReview.getSubjectExternalIdentifier();
    assertEquals("doi", subjectid.getType());
    assertEquals("peer-review:subject-external-identifier-id", subjectid.getValue());
    assertEquals(new Url("http://orcid.org"), subjectid.getUrl());
    assertEquals(Relationship.SELF, subjectid.getRelationship());
}

Example 45 with ExternalID

use of org.orcid.jaxb.model.record_rc4.ExternalID in project ORCID-Source by ORCID.

the class WorkToCiteprocTranslatorTest method testBibtexWorkTranslationHyperAuthorLiteralAndMissingDOI.

@Test
public void testBibtexWorkTranslationHyperAuthorLiteralAndMissingDOI() {
    Work w = makeWork(bibtexHyperLiteral);
    ExternalIDs wei = new ExternalIDs();
    ExternalID eid = new ExternalID();
    eid.setType(WorkExternalIdentifierType.DOI.name());
    //WorkExternalIdentifierId id = new WorkExternalIdentifierId();
    eid.setValue("10.1234/1234");
    wei.getExternalIdentifier().add(eid);
    w.setWorkExternalIdentifiers(wei);
    WorkToCiteprocTranslator t = new WorkToCiteprocTranslator();
    CSLItemData d = t.toCiteproc(w, null, true);
    Assert.assertEquals(d.getAuthor().length, 1);
    Assert.assertEquals(d.getAuthor()[0].getLiteral(), "Altshuler, D.M. and Durbin, R.M. and Abecasis, G.R. and Bentley, D.R. and Chakravarti, A. and Clark, A.G. and Donnelly, P. and Eichler, E.E. and Flicek, P. and Gabriel, S.B. and Gibbs, R.A. and Gre...");
    Assert.assertEquals(d.getDOI(), "10.1234/1234");
}