Examples with Group org.orcid.jaxb.model.record_rc4.Group used on opensource projects

Example 36 with Group

use of org.orcid.jaxb.model.record_rc4.Group in project ORCID-Source by ORCID.

the class Api2_0_rc4_LastModifiedDatesHelper method calculateLastModified.

public static void calculateLastModified(GroupsContainer groupsContainerRc4) {
    if (groupsContainerRc4.retrieveGroups() != null && !groupsContainerRc4.retrieveGroups().isEmpty()) {
        List<? extends Group> groupsRc1 = new ArrayList<>(groupsContainerRc4.retrieveGroups());
        List<org.orcid.jaxb.model.record_rc4.Group> groupsRc4 = new ArrayList<>(groupsContainerRc4.retrieveGroups());
        if (groupsRc1.get(0).getActivities() != null && !groupsRc1.get(0).getActivities().isEmpty()) {
            LastModifiedDate latest = null;
            for (Group group : groupsRc4) {
                calculateLastModified(group);
                if (group.getLastModifiedDate() != null && group.getLastModifiedDate().after(latest)) {
                    latest = group.getLastModifiedDate();
                }
            }
            groupsContainerRc4.setLastModifiedDate(latest);
        }
    }
}

Example 37 with Group

use of org.orcid.jaxb.model.record_rc4.Group in project ORCID-Source by ORCID.

the class PublicAPISecurityManagerV2Test method setVisibility.

private void setVisibility(GroupsContainer container, Visibility... vs) {
    assertEquals(container.retrieveGroups().size(), vs.length);
    int idx = 0;
    for (Group g : container.retrieveGroups()) {
        // Every group have just one element
        assertEquals(1, g.getActivities().size());
        for (Filterable f : g.getActivities()) {
            f.setVisibility(vs[idx++]);
        }
    }
}

Example 38 with Group

use of org.orcid.jaxb.model.record_rc4.Group in project ORCID-Source by ORCID.

the class MemberV2Test method testViewActivitiesSummaries.

@Test
public void testViewActivitiesSummaries() throws JSONException, InterruptedException, URISyntaxException {
    long time = System.currentTimeMillis();
    String accessTokenForClient1 = getAccessToken();
    String accessTokenForClient2 = getAccessToken(getUser1OrcidId(), getUser1Password(), getScopes(), getClient2ClientId(), getClient2ClientSecret(), getClient2RedirectUri());
    Education education = (Education) unmarshallFromPath("/record_2.0_rc4/samples/education-2.0_rc4.xml", Education.class);
    education.setPutCode(null);
    education.setVisibility(Visibility.PUBLIC);
    Employment employment = (Employment) unmarshallFromPath("/record_2.0_rc4/samples/employment-2.0_rc4.xml", Employment.class);
    employment.setPutCode(null);
    employment.setVisibility(Visibility.PUBLIC);
    Funding funding = (Funding) unmarshallFromPath("/record_2.0_rc4/samples/funding-2.0_rc4.xml", Funding.class);
    funding.setPutCode(null);
    funding.setVisibility(Visibility.PUBLIC);
    funding.getExternalIdentifiers().getExternalIdentifier().clear();
    ExternalID fExtId = new ExternalID();
    fExtId.setType(FundingExternalIdentifierType.GRANT_NUMBER.value());
    fExtId.setValue("Funding Id " + time);
    fExtId.setRelationship(Relationship.SELF);
    funding.getExternalIdentifiers().getExternalIdentifier().add(fExtId);
    Work work = (Work) unmarshallFromPath("/record_2.0_rc4/samples/work-2.0_rc4.xml", Work.class);
    work.setPutCode(null);
    work.setVisibility(Visibility.PUBLIC);
    work.getExternalIdentifiers().getExternalIdentifier().clear();
    ExternalID wExtId = new ExternalID();
    wExtId.setValue("Work Id " + time);
    wExtId.setType(WorkExternalIdentifierType.AGR.value());
    wExtId.setRelationship(Relationship.SELF);
    work.getExternalIdentifiers().getExternalIdentifier().add(wExtId);
    PeerReview peerReview = (PeerReview) unmarshallFromPath("/record_2.0_rc4/samples/peer-review-2.0_rc4.xml", PeerReview.class);
    peerReview.setPutCode(null);
    peerReview.setVisibility(Visibility.PUBLIC);
    peerReview.setGroupId(groupRecords.get(0).getGroupId());
    peerReview.getExternalIdentifiers().getExternalIdentifier().clear();
    ExternalID pExtId = new ExternalID();
    pExtId.setValue("Work Id " + time);
    pExtId.setType(WorkExternalIdentifierType.AGR.value());
    pExtId.setRelationship(Relationship.SELF);
    peerReview.getExternalIdentifiers().getExternalIdentifier().add(pExtId);
    ClientResponse postResponse = memberV2ApiClient.createEducationXml(this.getUser1OrcidId(), education, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    postResponse = memberV2ApiClient.createEmploymentXml(this.getUser1OrcidId(), employment, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    /**
     * Add 3 fundings 1 and 2 get grouped together 3 in another group
     * because it have different ext ids
     * *
     */
    // Add 1, the default funding
    postResponse = memberV2ApiClient.createFundingXml(this.getUser1OrcidId(), funding, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    funding.getTitle().getTitle().setContent("Funding # 2");
    ExternalID fExtId3 = new ExternalID();
    fExtId3.setType(FundingExternalIdentifierType.GRANT_NUMBER.value());
    fExtId3.setValue("extId3Value" + time);
    fExtId3.setRelationship(Relationship.SELF);
    funding.getExternalIdentifiers().getExternalIdentifier().add(fExtId3);
    // Add 2, with the same ext ids +1
    postResponse = memberV2ApiClient.createFundingXml(this.getUser1OrcidId(), funding, accessTokenForClient2);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    funding.getTitle().getTitle().setContent("Funding # 3");
    ExternalID fExtId4 = new ExternalID();
    fExtId4.setType(FundingExternalIdentifierType.GRANT_NUMBER.value());
    fExtId4.setValue("extId4Value" + time);
    fExtId4.setRelationship(Relationship.SELF);
    funding.getExternalIdentifiers().getExternalIdentifier().clear();
    funding.getExternalIdentifiers().getExternalIdentifier().add(fExtId4);
    // Add 3, with different ext ids
    postResponse = memberV2ApiClient.createFundingXml(this.getUser1OrcidId(), funding, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    /**
     * Add 3 works 1 and 2 get grouped together 3 in another group because
     * it have different ext ids
     */
    // Add 1, the default work
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    work.getWorkTitle().getTitle().setContent("Work # 2");
    ExternalID wExtId2 = new ExternalID();
    wExtId2.setType(WorkExternalIdentifierType.DOI.value());
    wExtId2.setValue("doi-ext-id" + time);
    wExtId2.setRelationship(Relationship.SELF);
    work.getExternalIdentifiers().getExternalIdentifier().add(wExtId2);
    // Add 2, with the same ext ids +1
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work, accessTokenForClient2);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    work.getWorkTitle().getTitle().setContent("Work # 3");
    ExternalID wExtId3 = new ExternalID();
    wExtId3.setType(WorkExternalIdentifierType.EID.value());
    wExtId3.setValue("eid-ext-id" + time);
    wExtId3.setRelationship(Relationship.SELF);
    work.getWorkExternalIdentifiers().getExternalIdentifier().clear();
    work.getWorkExternalIdentifiers().getExternalIdentifier().add(wExtId3);
    // Add 3, with different ext ids
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    /**
     * Add 4 peer reviews 1 and 2 get grouped together 3 in another group because
     * it have different group id 4 in another group because it doesnt have
     * any group id
     */
    // Add 1, the default peer review
    postResponse = memberV2ApiClient.createPeerReviewXml(this.getUser1OrcidId(), peerReview, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    peerReview.setGroupId(groupRecords.get(0).getGroupId());
    peerReview.getSubjectName().getTitle().setContent("PeerReview # 2");
    peerReview.getCompletionDate().setDay(new Day(2));
    peerReview.getCompletionDate().setMonth(new Month(2));
    peerReview.getCompletionDate().setYear(new Year(2016));
    peerReview.setUrl(new Url("http://peer_review/2"));
    ExternalID pExtId2 = new ExternalID();
    pExtId2.setType(WorkExternalIdentifierType.DOI.value());
    pExtId2.setValue("doi-ext-id" + System.currentTimeMillis());
    pExtId2.setRelationship(Relationship.SELF);
    for (ExternalID wei : peerReview.getExternalIdentifiers().getExternalIdentifier()) {
        wei.setValue(wei.getValue() + System.currentTimeMillis());
    }
    peerReview.getExternalIdentifiers().getExternalIdentifier().add(pExtId2);
    // Add 2, with the same ext ids +1
    postResponse = memberV2ApiClient.createPeerReviewXml(this.getUser1OrcidId(), peerReview, accessTokenForClient2);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    peerReview.setGroupId(groupRecords.get(1).getGroupId());
    peerReview.getSubjectName().getTitle().setContent("PeerReview # 3");
    peerReview.getCompletionDate().setDay(new Day(3));
    peerReview.getCompletionDate().setMonth(new Month(3));
    peerReview.getCompletionDate().setYear(new Year(2017));
    peerReview.setUrl(new Url("http://peer_review/3"));
    ExternalID pExtId3 = new ExternalID();
    pExtId3.setType(WorkExternalIdentifierType.EID.value());
    pExtId3.setValue("eid-ext-id" + System.currentTimeMillis());
    pExtId3.setRelationship(Relationship.SELF);
    peerReview.getExternalIdentifiers().getExternalIdentifier().clear();
    peerReview.getExternalIdentifiers().getExternalIdentifier().add(pExtId3);
    // Add 3, with different ext ids
    postResponse = memberV2ApiClient.createPeerReviewXml(this.getUser1OrcidId(), peerReview, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    peerReview.setGroupId(groupRecords.get(0).getGroupId());
    peerReview.getSubjectName().getTitle().setContent("PeerReview # 4");
    peerReview.getCompletionDate().setDay(new Day(4));
    peerReview.getCompletionDate().setMonth(new Month(4));
    peerReview.getCompletionDate().setYear(new Year(2018));
    peerReview.setUrl(new Url("http://peer_review/4"));
    ExternalID pExtId4 = new ExternalID();
    pExtId4.setType(WorkExternalIdentifierType.EID.value());
    pExtId4.setValue("eid-ext-id" + System.currentTimeMillis());
    pExtId4.setRelationship(Relationship.SELF);
    peerReview.getExternalIdentifiers().getExternalIdentifier().clear();
    peerReview.getExternalIdentifiers().getExternalIdentifier().add(pExtId4);
    // Add 4, without ext ids
    postResponse = memberV2ApiClient.createPeerReviewXml(this.getUser1OrcidId(), peerReview, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    /**
     * Now, get the summaries and verify the following: - Education summary
     * is complete - Employment summary is complete - There are 3 groups of
     * fundings -- One group with 2 fundings -- One group with one funding
     * with ext ids -- One group with one funding without ext ids
     *
     * - There are 3 groups of works -- One group with 2 works -- One group
     * with one work with ext ids -- One group with one work without ext ids
     *
     * peer review -- There are 3 groups of peer reviews -- One group with 2
     * peer reviews -- One groups with one peer review and ext ids -- One
     * group with one peer review but without ext ids
     */
    ClientResponse activitiesResponse = memberV2ApiClient.viewActivities(this.getUser1OrcidId(), accessTokenForClient1);
    assertEquals(Response.Status.OK.getStatusCode(), activitiesResponse.getStatus());
    ActivitiesSummary activities = activitiesResponse.getEntity(ActivitiesSummary.class);
    assertNotNull(activities);
    assertFalse(activities.getEducations().getSummaries().isEmpty());
    boolean found = false;
    Long educationPutCode = null;
    for (EducationSummary summary : activities.getEducations().getSummaries()) {
        if (summary.getRoleTitle() != null && summary.getRoleTitle().equals("education:role-title")) {
            assertEquals("education:department-name", summary.getDepartmentName());
            assertEquals(FuzzyDate.valueOf(1848, 2, 2), summary.getStartDate());
            assertEquals(FuzzyDate.valueOf(1848, 2, 2), summary.getEndDate());
            educationPutCode = summary.getPutCode();
            found = true;
            break;
        }
    }
    assertTrue("Education not found", found);
    assertFalse(activities.getEmployments().getSummaries().isEmpty());
    found = false;
    Long employmentPutCode = null;
    for (EmploymentSummary summary : activities.getEmployments().getSummaries()) {
        if (summary.getRoleTitle() != null && summary.getRoleTitle().equals("employment:role-title")) {
            assertEquals("employment:department-name", summary.getDepartmentName());
            assertEquals(FuzzyDate.valueOf(1848, 2, 2), summary.getStartDate());
            assertEquals(FuzzyDate.valueOf(1848, 2, 2), summary.getEndDate());
            employmentPutCode = summary.getPutCode();
            found = true;
            break;
        }
    }
    assertTrue("Employment not found", found);
    assertNotNull(activities.getFundings());
    boolean found1 = false, found2 = false, found3 = false, found4 = false;
    List<Long> fundingPutCodes = new ArrayList<Long>();
    for (FundingGroup group : activities.getFundings().getFundingGroup()) {
        for (FundingSummary summary : group.getFundingSummary()) {
            if (summary.getTitle().getTitle().getContent().equals("common:title")) {
                found1 = true;
                fundingPutCodes.add(summary.getPutCode());
            } else if (summary.getTitle().getTitle().getContent().equals("Funding # 2")) {
                found2 = true;
                fundingPutCodes.add(summary.getPutCode());
            } else if (summary.getTitle().getTitle().getContent().equals("Funding # 3")) {
                found3 = true;
                fundingPutCodes.add(summary.getPutCode());
            }
        }
    }
    assertTrue("One of the fundings was not found: 1(" + found1 + ") 2(" + found2 + ") 3(" + found3 + ")", found1 == found2 == found3 == true);
    assertNotNull(activities.getWorks());
    found1 = found2 = found3 = false;
    List<Long> worksPutCodes = new ArrayList<Long>();
    for (WorkGroup group : activities.getWorks().getWorkGroup()) {
        for (WorkSummary summary : group.getWorkSummary()) {
            if (summary.getTitle().getTitle().getContent().equals("common:title")) {
                found1 = true;
                worksPutCodes.add(summary.getPutCode());
            } else if (summary.getTitle().getTitle().getContent().equals("Work # 2")) {
                found2 = true;
                worksPutCodes.add(summary.getPutCode());
            } else if (summary.getTitle().getTitle().getContent().equals("Work # 3")) {
                found3 = true;
                worksPutCodes.add(summary.getPutCode());
            }
        }
    }
    assertTrue("One of the works was not found: 1(" + found1 + ") 2(" + found2 + ") 3(" + found3 + ")", found1 == found2 == found3 == true);
    assertNotNull(activities.getPeerReviews());
    found1 = found2 = found3 = found4 = false;
    List<Long> peerReviewPutCodes = new ArrayList<Long>();
    for (PeerReviewGroup group : activities.getPeerReviews().getPeerReviewGroup()) {
        for (PeerReviewSummary summary : group.getPeerReviewSummary()) {
            if (summary.getCompletionDate() != null && summary.getCompletionDate().getYear() != null) {
                if (summary.getCompletionDate().getYear().getValue().equals("1848")) {
                    found1 = true;
                    peerReviewPutCodes.add(summary.getPutCode());
                } else if (summary.getCompletionDate().getYear().getValue().equals("2016")) {
                    found2 = true;
                    peerReviewPutCodes.add(summary.getPutCode());
                } else if (summary.getCompletionDate().getYear().getValue().equals("2017")) {
                    found3 = true;
                    peerReviewPutCodes.add(summary.getPutCode());
                } else if (summary.getCompletionDate().getYear().getValue().equals("2018")) {
                    found4 = true;
                    peerReviewPutCodes.add(summary.getPutCode());
                }
            }
        }
    }
    assertTrue("One of the peer reviews was not found: 1(" + found1 + ") 2(" + found2 + ") 3(" + found3 + ") 4(" + found4 + ")", found1 == found2 == found3 == found4 == true);
    // Delete all created elements
    ClientResponse deleteResponse = memberV2ApiClient.deleteEmploymentXml(this.getUser1OrcidId(), employmentPutCode, accessTokenForClient1);
    assertNotNull(deleteResponse);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    deleteResponse = memberV2ApiClient.deleteEducationXml(this.getUser1OrcidId(), educationPutCode, accessTokenForClient1);
    assertNotNull(deleteResponse);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    for (Long putCode : fundingPutCodes) {
        deleteResponse = memberV2ApiClient.deleteFundingXml(this.getUser1OrcidId(), putCode, accessTokenForClient1);
        assertNotNull(deleteResponse);
        if (Response.Status.NO_CONTENT.getStatusCode() != deleteResponse.getStatus()) {
            // It belongs to client2, so, delete it with client2 token
            deleteResponse = memberV2ApiClient.deleteFundingXml(this.getUser1OrcidId(), putCode, accessTokenForClient2);
            assertNotNull(deleteResponse);
            assertEquals("Unable to delete funding " + putCode, Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
        }
    }
    for (Long putCode : worksPutCodes) {
        deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode, accessTokenForClient1);
        assertNotNull(deleteResponse);
        if (Response.Status.NO_CONTENT.getStatusCode() != deleteResponse.getStatus()) {
            // It belongs to client2, so, delete it with client2 token
            deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode, accessTokenForClient2);
            assertNotNull(deleteResponse);
            assertEquals("Unable to delete work " + putCode, Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
        }
    }
    for (Long putCode : peerReviewPutCodes) {
        deleteResponse = memberV2ApiClient.deletePeerReviewXml(this.getUser1OrcidId(), putCode, accessTokenForClient1);
        assertNotNull(deleteResponse);
        if (Response.Status.NO_CONTENT.getStatusCode() != deleteResponse.getStatus()) {
            // It belongs to client2, so, delete it with client2 token
            deleteResponse = memberV2ApiClient.deletePeerReviewXml(this.getUser1OrcidId(), putCode, accessTokenForClient2);
            assertNotNull(deleteResponse);
            assertEquals("Unable to delete peer review " + putCode, Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
        }
    }
}

Example 39 with Group

use of org.orcid.jaxb.model.record_rc4.Group in project sirix by sirixdb.

the class AbstractSunburstGUI method style.

/**
 * Style menu.
 */
protected void style() {
    final Group ctrl = mControlP5.addGroup("menu", 15, 25, 35);
    ctrl.setColorLabel(mParent.color(255));
    ctrl.setColorBackground(mParent.color(100));
    ctrl.close();
    mParent.colorMode(PConstants.RGB, 255, 255, 255);
    final int backgroundColor = 0x99ffffff;
    int i = 0;
    for (final Slider slider : mSliders) {
        slider.setGroup(ctrl);
        slider.setId(i);
        final Label label = slider.getCaptionLabel();
        label.toUpperCase(true);
        label.setColor(mParent.color(0));
        label.setColorBackground(backgroundColor);
        final ControllerStyle style = label.getStyle();
        style.padding(4, 0, 1, 3);
        style.marginTop = -4;
        style.marginLeft = 0;
        style.marginRight = -14;
        slider.plugTo(mControl);
        i++;
    }
    i = 0;
    for (final Range range : mRanges) {
        range.setGroup(ctrl);
        range.setId(i);
        final Label label = range.getCaptionLabel();
        label.toUpperCase(true);
        label.setColor(mParent.color(0));
        label.setColorBackground(backgroundColor);
        final ControllerStyle style = label.getStyle();
        style.padding(4, 0, 1, 3);
        style.marginTop = -4;
        range.plugTo(mControl);
        i++;
    }
    i = 0;
    for (final Toggle toggle : mToggles) {
        toggle.setGroup(ctrl);
        toggle.setId(i);
        final Label label = toggle.getCaptionLabel();
        label.setColor(mParent.color(0));
        label.setColorBackground(backgroundColor);
        final ControllerStyle style = label.getStyle();
        style.padding(4, 3, 1, 3);
        style.marginTop = -19;
        style.marginLeft = 18;
        style.marginRight = 5;
        toggle.plugTo(mControl);
        i++;
    }
    mParent.colorMode(PConstants.HSB, 360, 100, 100);
    mParent.textLeading(14);
    mParent.textAlign(PConstants.LEFT, PConstants.TOP);
    mParent.cursor(PConstants.CROSS);
}

Example 40 with Group

use of org.orcid.jaxb.model.record_rc4.Group in project bioformats by openmicroscopy.

the class NetCDFServiceImpl method parseAttributesAndVariables.

// -- Helper methods --
/**
 * Recursively parses attribute and variable paths, filling
 * <code>attributeList</code> and <code>variableList</code>.
 * @param groups List of groups to recursively parse.
 */
private void parseAttributesAndVariables(List<Group> groups) {
    for (Group group : groups) {
        String groupName = group.getName();
        List<Attribute> attributes = group.getAttributes();
        for (Attribute attribute : attributes) {
            String attributeName = attribute.getName();
            if (!groupName.endsWith("/"))
                attributeName = "/" + attributeName;
            attributeList.add(groupName + attributeName);
        }
        List<Variable> variables = group.getVariables();
        for (Variable variable : variables) {
            String variableName = variable.getName();
            if (!groupName.endsWith("/"))
                variableName = "/" + variableName;
            variableList.add(variableName);
        }
        groups = group.getGroups();
        parseAttributesAndVariables(groups);
    }
}