Examples with Biography org.orcid.jaxb.model.record_v2.Biography used on opensource projects

Example 66 with Biography

use of org.orcid.jaxb.model.record_v2.Biography in project ORCID-Source by ORCID.

the class RecordManagerTest method testGetPublicRecord.

@Test
public void testGetPublicRecord() {
    Record record = RecordManager.getPublicRecord(ORCID);
    assertNotNull(record);
    assertNotNull(record.getActivitiesSummary());
    assertNotNull(record.getPerson());
    Person person = record.getPerson();
    assertNotNull(person);
    assertNotNull(person.getExternalIdentifiers());
    assertNotNull(person.getExternalIdentifiers().getExternalIdentifiers());
    assertEquals(1, person.getExternalIdentifiers().getExternalIdentifiers().size());
    assertEquals(Long.valueOf(13), person.getExternalIdentifiers().getExternalIdentifiers().get(0).getPutCode());
    assertNotNull(person.getResearcherUrls());
    assertNotNull(person.getResearcherUrls().getResearcherUrls());
    assertEquals(1, person.getResearcherUrls().getResearcherUrls().size());
    assertEquals(Long.valueOf(13), person.getResearcherUrls().getResearcherUrls().get(0).getPutCode());
    assertNotNull(person.getOtherNames());
    assertNotNull(person.getOtherNames().getOtherNames());
    assertEquals(1, person.getOtherNames().getOtherNames().size());
    assertEquals(Long.valueOf(13), person.getOtherNames().getOtherNames().get(0).getPutCode());
    assertNotNull(person.getAddresses());
    assertNotNull(person.getAddresses().getAddress());
    assertEquals(1, person.getAddresses().getAddress().size());
    assertEquals(Long.valueOf(9), person.getAddresses().getAddress().get(0).getPutCode());
    assertNotNull(person.getKeywords());
    assertNotNull(person.getKeywords().getKeywords());
    assertEquals(1, person.getKeywords().getKeywords().size());
    assertEquals(Long.valueOf(9), person.getKeywords().getKeywords().get(0).getPutCode());
    assertNotNull(person.getEmails());
    assertNotNull(person.getEmails().getEmails());
    assertEquals(1, person.getEmails().getEmails().size());
    assertEquals("public_0000-0000-0000-0003@test.orcid.org", person.getEmails().getEmails().get(0).getEmail());
    assertNotNull(person.getBiography());
    assertEquals(Visibility.PUBLIC, person.getBiography().getVisibility());
    assertEquals("Biography for 0000-0000-0000-0003", person.getBiography().getContent());
    assertNotNull(person.getName());
    assertNotNull(person.getName().getCreditName());
    assertEquals("Credit Name", person.getName().getCreditName().getContent());
    assertNotNull(person.getName().getFamilyName());
    assertEquals("Family Name", person.getName().getFamilyName().getContent());
    assertNotNull(person.getName().getGivenNames());
    assertEquals("Given Names", person.getName().getGivenNames().getContent());
    assertEquals(Visibility.PUBLIC, person.getName().getVisibility());
    ActivitiesSummary activities = record.getActivitiesSummary();
    assertNotNull(activities.getEducations());
    assertNotNull(activities.getEducations().getSummaries());
    assertEquals(1, activities.getEducations().getSummaries().size());
    assertEquals(Long.valueOf(20), activities.getEducations().getSummaries().get(0).getPutCode());
    assertNotNull(activities.getEmployments());
    assertNotNull(activities.getEmployments().getSummaries());
    assertEquals(1, activities.getEmployments().getSummaries().size());
    assertEquals(Long.valueOf(17), activities.getEmployments().getSummaries().get(0).getPutCode());
    assertNotNull(activities.getFundings());
    assertNotNull(activities.getFundings().getFundingGroup());
    assertEquals(1, activities.getFundings().getFundingGroup().size());
    assertEquals(Long.valueOf(10), activities.getFundings().getFundingGroup().get(0).getFundingSummary().get(0).getPutCode());
    assertNotNull(activities.getPeerReviews());
    assertNotNull(activities.getPeerReviews().getPeerReviewGroup());
    assertEquals(1, activities.getPeerReviews().getPeerReviewGroup().size());
    assertEquals(Long.valueOf(9), activities.getPeerReviews().getPeerReviewGroup().get(0).getPeerReviewSummary().get(0).getPutCode());
    assertNotNull(activities.getWorks());
    assertNotNull(activities.getWorks().getWorkGroup());
    assertEquals(1, activities.getWorks().getWorkGroup().size());
    assertEquals(Long.valueOf(11), activities.getWorks().getWorkGroup().get(0).getWorkSummary().get(0).getPutCode());
}

Example 67 with Biography

use of org.orcid.jaxb.model.record_v2.Biography in project ORCID-Source by ORCID.

the class SetUpClientsAndUsers method clearRegistry.

private boolean clearRegistry(OrcidProfile existingProfile, Map<String, String> params) {
    if (existingProfile != null) {
        String orcid = params.get(ORCID);
        String email = params.get(EMAIL);
        // exception
        if (existingProfile.getOrcidBio() == null || existingProfile.getOrcidBio().getContactDetails() == null || existingProfile.getOrcidBio().getContactDetails().retrievePrimaryEmail() == null || !email.equals(existingProfile.getOrcidBio().getContactDetails().retrievePrimaryEmail().getValue())) {
            throw new ApplicationException("User with email " + params.get(EMAIL) + " must have orcid id '" + orcid + "' but it is '" + existingProfile.getOrcidId() + "'");
        }
        // Check if the profile have the same password, if not, update the
        // password
        String encryptedPassword = encryptionManager.hashForInternalUse(params.get(PASSWORD));
        if (!encryptedPassword.equals(existingProfile.getPassword())) {
            existingProfile.setPassword(params.get(PASSWORD));
            orcidProfileManager.updatePasswordInformation(existingProfile);
        }
        // Set default names
        Name name = new Name();
        name.setCreditName(new CreditName(params.get(CREDIT_NAME)));
        name.setGivenNames(new GivenNames(params.get(GIVEN_NAMES)));
        name.setFamilyName(new FamilyName(params.get(FAMILY_NAMES)));
        name.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(OrcidVisibilityDefaults.NAMES_DEFAULT.getVisibility().value()));
        if (recordNameManager.exists(orcid)) {
            recordNameManager.updateRecordName(orcid, name);
        } else {
            recordNameManager.createRecordName(orcid, name);
        }
        profileDao.updatePreferences(orcid, true, true, true, true, org.orcid.jaxb.model.common_v2.Visibility.PUBLIC, true, 1f);
        // Set default bio
        org.orcid.jaxb.model.record_v2.Biography bio = biographyManager.getBiography(orcid, 0L);
        if (bio == null || bio.getContent() == null) {
            bio = new org.orcid.jaxb.model.record_v2.Biography(params.get(BIO));
            bio.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(OrcidVisibilityDefaults.BIOGRAPHY_DEFAULT.getVisibility().value()));
            biographyManager.createBiography(orcid, bio);
        } else {
            bio.setContent(params.get(BIO));
            bio.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(OrcidVisibilityDefaults.BIOGRAPHY_DEFAULT.getVisibility().value()));
            biographyManager.updateBiography(orcid, bio);
        }
        // Remove other names
        List<OtherNameEntity> otherNames = otherNameDao.getOtherNames(orcid, 0L);
        if (otherNames != null && !otherNames.isEmpty()) {
            for (OtherNameEntity otherName : otherNames) {
                otherNameDao.deleteOtherName(otherName);
            }
        }
        // Remove keywords
        List<ProfileKeywordEntity> keywords = profileKeywordDao.getProfileKeywors(orcid, 0L);
        if (keywords != null && !keywords.isEmpty()) {
            for (ProfileKeywordEntity keyword : keywords) {
                profileKeywordDao.deleteProfileKeyword(keyword);
            }
        }
        //Remove researcher urls
        List<ResearcherUrlEntity> rUrls = researcherUrlDao.getResearcherUrls(orcid, 0L);
        if (rUrls != null && !rUrls.isEmpty()) {
            for (ResearcherUrlEntity rUrl : rUrls) {
                researcherUrlDao.deleteResearcherUrl(orcid, rUrl.getId());
            }
        }
        // Remove external ids
        List<ExternalIdentifierEntity> extIds = externalIdentifierDao.getExternalIdentifiers(orcid, System.currentTimeMillis());
        if (extIds != null && !extIds.isEmpty()) {
            for (ExternalIdentifierEntity extId : extIds) {
                externalIdentifierDao.removeExternalIdentifier(orcid, extId.getId());
            }
        }
        // Remove addresses
        List<AddressEntity> addresses = addressDao.getAddresses(orcid, 0L);
        if (addresses != null && !addresses.isEmpty()) {
            for (AddressEntity address : addresses) {
                addressDao.deleteAddress(orcid, address.getId());
            }
        }
        // Remove emails
        List<EmailEntity> emails = emailDao.findByOrcid(orcid);
        if (emails != null && !emails.isEmpty()) {
            for (EmailEntity rc2Email : emails) {
                if (!params.get(EMAIL).equals(rc2Email.getId())) {
                    emailDao.removeEmail(orcid, rc2Email.getId());
                }
            }
        }
        // Remove notifications
        List<NotificationEntity> notifications = notificationDao.findByOrcid(orcid, true, 0, 10000);
        if (notifications != null && !notifications.isEmpty()) {
            for (NotificationEntity notification : notifications) {
                notificationDao.deleteNotificationItemByNotificationId(notification.getId());
                notificationDao.deleteNotificationWorkByNotificationId(notification.getId());
                notificationDao.deleteNotificationById(notification.getId());
            }
        }
        // Remove works
        List<MinimizedWorkEntity> works = workDao.findWorks(orcid, 0L);
        if (works != null && !works.isEmpty()) {
            for (MinimizedWorkEntity work : works) {
                workDao.removeWork(orcid, work.getId());
            }
        }
        // Remove affiliations
        List<OrgAffiliationRelationEntity> affiliations = orgAffiliationRelationDao.getByUser(orcid);
        if (affiliations != null && !affiliations.isEmpty()) {
            for (OrgAffiliationRelationEntity affiliation : affiliations) {
                orgAffiliationRelationDao.remove(affiliation.getId());
            }
        }
        // Remove fundings
        List<ProfileFundingEntity> fundings = profileFundingDao.getByUser(orcid);
        if (fundings != null && !fundings.isEmpty()) {
            for (ProfileFundingEntity funding : fundings) {
                profileFundingDao.removeProfileFunding(orcid, funding.getId());
            }
        }
        // Remove peer reviews
        List<PeerReviewEntity> peerReviews = peerReviewDao.getByUser(orcid);
        if (peerReviews != null && !peerReviews.isEmpty()) {
            for (PeerReviewEntity peerReview : peerReviews) {
                peerReviewDao.removePeerReview(orcid, peerReview.getId());
            }
        }
        // Remove 3d party links
        List<OrcidOauth2TokenDetail> tokenDetails = orcidOauth2TokenDetailDao.findByUserName(orcid);
        if (tokenDetails != null && !tokenDetails.isEmpty()) {
            for (OrcidOauth2TokenDetail token : tokenDetails) {
                orcidOauth2TokenDetailDao.remove(token.getId());
            }
        }
        //Unlock just in case it is locked
        profileDao.unlockProfile(orcid);
        return true;
    }
    return false;
}

Example 68 with Biography

use of org.orcid.jaxb.model.record_v2.Biography in project ORCID-Source by ORCID.

the class ManageProfileController method getBiographyForm.

@RequestMapping(value = "/biographyForm.json", method = RequestMethod.GET)
@ResponseBody
public BiographyForm getBiographyForm() {
    Biography bio = biographyManager.getBiography(getCurrentUserOrcid(), profileEntityManager.getLastModified(getCurrentUserOrcid()));
    BiographyForm form = BiographyForm.valueOf(bio);
    if (form.getVisiblity() == null) {
        ProfileEntity profile = profileEntityCacheManager.retrieve(getCurrentUserOrcid());
        form.setVisiblity(Visibility.valueOf(profile.getActivitiesVisibilityDefault()));
    }
    return form;
}

Example 69 with Biography

use of org.orcid.jaxb.model.record_v2.Biography in project ORCID-Source by ORCID.

the class MemberV2ApiServiceDelegatorImpl method viewResearcherUrls.

/**
     * BIOGRAPHY ELEMENTS
     */
@Override
public Response viewResearcherUrls(String orcid) {
    ResearcherUrls researcherUrls = researcherUrlManagerReadOnly.getResearcherUrls(orcid, getLastModifiedTime(orcid));
    // Lets copy the list so we don't modify the cached collection
    if (researcherUrls.getResearcherUrls() != null) {
        List<ResearcherUrl> filteredList = new ArrayList<ResearcherUrl>(researcherUrls.getResearcherUrls());
        researcherUrls = new ResearcherUrls();
        researcherUrls.setResearcherUrls(filteredList);
    }
    orcidSecurityManager.checkAndFilter(orcid, researcherUrls.getResearcherUrls(), ScopePathType.ORCID_BIO_READ_LIMITED);
    ElementUtils.setPathToResearcherUrls(researcherUrls, orcid);
    Api2_0_LastModifiedDatesHelper.calculateLastModified(researcherUrls);
    sourceUtils.setSourceName(researcherUrls);
    return Response.ok(researcherUrls).build();
}

Example 70 with Biography

use of org.orcid.jaxb.model.record_v2.Biography in project ORCID-Source by ORCID.

the class BiographyManagerTest method testCreateBiography.

@Test
public void testCreateBiography() {
    String orcid = "0000-0000-0000-0004";
    Biography bio = new Biography();
    bio.setContent("This is my biography");
    bio.setVisibility(Visibility.LIMITED);
    biographyManager.createBiography(orcid, bio);
    Biography newBio = biographyManager.getBiography(orcid, 0);
    assertNotNull(newBio);
    assertEquals("This is my biography", newBio.getContent());
    assertEquals(Visibility.LIMITED, newBio.getVisibility());
}