Examples with Biography org.orcid.jaxb.model.record_v2.Biography used on opensource projects

Example 26 with Biography

use of org.orcid.jaxb.model.record_v2.Biography in project ORCID-Source by ORCID.

the class ValidateV2SamplesTest method unmarshallFromPath.

private Object unmarshallFromPath(String path, Class<?> type, String schemaPath) throws SAXException, URISyntaxException {
    try (Reader reader = new InputStreamReader(getClass().getResourceAsStream(path))) {
        Object obj = unmarshall(reader, type, schemaPath);
        Object result = null;
        if (ResearcherUrls.class.equals(type)) {
            result = (ResearcherUrls) obj;
        } else if (ResearcherUrl.class.equals(type)) {
            result = (ResearcherUrl) obj;
        } else if (PersonalDetails.class.equals(type)) {
            result = (PersonalDetails) obj;
        } else if (PersonExternalIdentifier.class.equals(type)) {
            result = (PersonExternalIdentifier) obj;
        } else if (PersonExternalIdentifiers.class.equals(type)) {
            result = (PersonExternalIdentifiers) obj;
        } else if (Biography.class.equals(type)) {
            result = (Biography) obj;
        } else if (Name.class.equals(type)) {
            result = (Name) obj;
        } else if (CreditName.class.equals(type)) {
            result = (CreditName) obj;
        } else if (OtherName.class.equals(type)) {
            result = (OtherName) obj;
        } else if (OtherNames.class.equals(type)) {
            result = (OtherNames) obj;
        } else if (Keywords.class.equals(type)) {
            result = (Keywords) obj;
        } else if (Keyword.class.equals(type)) {
            result = (Keyword) obj;
        } else if (Addresses.class.equals(type)) {
            result = (Addresses) obj;
        } else if (Address.class.equals(type)) {
            result = (Address) obj;
        } else if (Emails.class.equals(type)) {
            result = (Emails) obj;
        } else if (Email.class.equals(type)) {
            result = (Email) obj;
        } else if (Person.class.equals(type)) {
            result = (Person) obj;
        } else if (Deprecated.class.equals(type)) {
            result = (Deprecated) obj;
        } else if (Preferences.class.equals(type)) {
            result = (Preferences) obj;
        } else if (History.class.equals(type)) {
            result = (History) obj;
        } else if (Record.class.equals(type)) {
            result = (Record) obj;
        } else if (ActivitiesSummary.class.equals(type)) {
            result = (ActivitiesSummary) obj;
        } else if (Works.class.equals(type)) {
            result = (Works) obj;
        }
        return result;
    } catch (IOException e) {
        throw new RuntimeException("Error reading notification from classpath", e);
    }
}

Example 27 with Biography

use of org.orcid.jaxb.model.record_v2.Biography in project ORCID-Source by ORCID.

the class ValidateV2SamplesTest method testUnmarshallBiography.

@Test
public void testUnmarshallBiography() throws SAXException, URISyntaxException {
    Biography bio = (Biography) unmarshallFromPath("/record_2.0/samples/read_samples/biography-2.0.xml", Biography.class, "/record_2.0/personal-details-2.0.xsd");
    assertNotNull(bio);
    assertEquals("biography V2.0", bio.getContent());
    assertEquals(Visibility.PUBLIC.value(), bio.getVisibility().value());
}

Example 28 with Biography

use of org.orcid.jaxb.model.record_v2.Biography in project ORCID-Source by ORCID.

the class OrcidInfo method publicPreview.

@RequestMapping(value = { "/{orcid:(?:\\d{4}-){3,}\\d{3}[\\dX]}", "/{orcid:(?:\\d{4}-){3,}\\d{3}[\\dX]}/print" })
public ModelAndView publicPreview(HttpServletRequest request, @RequestParam(value = "page", defaultValue = "1") int pageNo, @RequestParam(value = "v", defaultValue = "0") int v, @RequestParam(value = "maxResults", defaultValue = "15") int maxResults, @PathVariable("orcid") String orcid) {
    ProfileEntity profile = null;
    try {
        profile = profileEntityCacheManager.retrieve(orcid);
    } catch (Exception e) {
        return new ModelAndView("error-404");
    }
    try {
        // Check if the profile is deprecated, non claimed or locked
        orcidSecurityManager.checkProfile(orcid);
    } catch (OrcidDeprecatedException | OrcidNotClaimedException | LockedException e) {
        ModelAndView mav = new ModelAndView("public_profile_unavailable");
        mav.addObject("effectiveUserOrcid", orcid);
        String displayName = "";
        if (e instanceof OrcidDeprecatedException) {
            PersonalDetails publicPersonalDetails = personalDetailsManager.getPublicPersonalDetails(orcid);
            if (publicPersonalDetails.getName() != null) {
                Name name = publicPersonalDetails.getName();
                if (name.getVisibility().equals(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC)) {
                    if (name.getCreditName() != null && !PojoUtil.isEmpty(name.getCreditName().getContent())) {
                        displayName = name.getCreditName().getContent();
                    } else {
                        if (name.getGivenNames() != null && !PojoUtil.isEmpty(name.getGivenNames().getContent())) {
                            displayName = name.getGivenNames().getContent() + " ";
                        }
                        if (name.getFamilyName() != null && !PojoUtil.isEmpty(name.getFamilyName().getContent())) {
                            displayName += name.getFamilyName().getContent();
                        }
                    }
                }
            }
            mav.addObject("deprecated", true);
            mav.addObject("primaryRecord", profile.getPrimaryRecord().getId());
        } else if (e instanceof OrcidNotClaimedException) {
            displayName = localeManager.resolveMessage("orcid.reserved_for_claim");
        } else {
            mav.addObject("locked", true);
            mav.addObject("isPublicProfile", true);
            displayName = localeManager.resolveMessage("public_profile.deactivated.given_names") + " " + localeManager.resolveMessage("public_profile.deactivated.family_name");
        }
        if (!PojoUtil.isEmpty(displayName)) {
            mav.addObject("title", getMessage("layout.public-layout.title", displayName, orcid));
            mav.addObject("displayName", displayName);
        }
        return mav;
    }
    long lastModifiedTime = getLastModifiedTime(orcid);
    ModelAndView mav = null;
    if (request.getRequestURI().contains("/print")) {
        mav = new ModelAndView("print_public_record");
        mav.addObject("hideUserVoiceScript", true);
    } else {
        mav = new ModelAndView("public_profile_v3");
    }
    mav.addObject("isPublicProfile", true);
    mav.addObject("effectiveUserOrcid", orcid);
    mav.addObject("lastModifiedTime", lastModifiedTime);
    boolean isProfileEmtpy = true;
    HttpSession session = request.getSession(false);
    if (session != null) {
        session.removeAttribute(PUBLIC_WORKS_RESULTS_ATTRIBUTE);
    }
    PersonalDetails publicPersonalDetails = personalDetailsManager.getPublicPersonalDetails(orcid);
    // Fill personal details
    if (publicPersonalDetails != null) {
        // Get display name
        String displayName = "";
        if (publicPersonalDetails.getName() != null) {
            Name name = publicPersonalDetails.getName();
            if (name.getVisibility().equals(org.orcid.jaxb.model.common_v2.Visibility.PUBLIC)) {
                if (name.getCreditName() != null && !PojoUtil.isEmpty(name.getCreditName().getContent())) {
                    displayName = name.getCreditName().getContent();
                } else {
                    if (name.getGivenNames() != null && !PojoUtil.isEmpty(name.getGivenNames().getContent())) {
                        displayName = name.getGivenNames().getContent() + " ";
                    }
                    if (name.getFamilyName() != null && !PojoUtil.isEmpty(name.getFamilyName().getContent())) {
                        displayName += name.getFamilyName().getContent();
                    }
                }
            }
        }
        if (!PojoUtil.isEmpty(displayName)) {
            // <Published Name> (<ORCID iD>) - ORCID | Connecting Research
            // and Researchers
            mav.addObject("title", getMessage("layout.public-layout.title", displayName.trim(), orcid));
            mav.addObject("displayName", displayName);
        }
        // Get biography
        if (publicPersonalDetails.getBiography() != null) {
            Biography bio = publicPersonalDetails.getBiography();
            if (org.orcid.jaxb.model.common_v2.Visibility.PUBLIC.equals(bio.getVisibility()) && !PojoUtil.isEmpty(bio.getContent())) {
                isProfileEmtpy = false;
                mav.addObject("biography", bio);
            }
        }
        // Fill other names
        OtherNames publicOtherNames = publicPersonalDetails.getOtherNames();
        if (publicOtherNames != null && publicOtherNames.getOtherNames() != null) {
            Iterator<OtherName> it = publicOtherNames.getOtherNames().iterator();
            while (it.hasNext()) {
                OtherName otherName = it.next();
                if (!org.orcid.jaxb.model.common_v2.Visibility.PUBLIC.equals(otherName.getVisibility())) {
                    it.remove();
                }
            }
        }
        Map<String, List<OtherName>> groupedOtherNames = groupOtherNames(publicOtherNames);
        mav.addObject("publicGroupedOtherNames", groupedOtherNames);
    }
    // Fill biography elements
    // Fill country
    Addresses publicAddresses = addressManager.getPublicAddresses(orcid, lastModifiedTime);
    Map<String, String> countryNames = new HashMap<String, String>();
    if (publicAddresses != null && publicAddresses.getAddress() != null) {
        Address publicAddress = null;
        // The primary address will be the one with the lowest display index
        for (Address address : publicAddresses.getAddress()) {
            countryNames.put(address.getCountry().getValue().value(), getcountryName(address.getCountry().getValue().value()));
            if (publicAddress == null) {
                publicAddress = address;
            }
        }
        if (publicAddress != null) {
            mav.addObject("publicAddress", publicAddress);
            mav.addObject("countryNames", countryNames);
            Map<String, List<Address>> groupedAddresses = groupAddresses(publicAddresses);
            mav.addObject("publicGroupedAddresses", groupedAddresses);
        }
    }
    // Fill keywords
    Keywords publicKeywords = keywordManager.getPublicKeywords(orcid, lastModifiedTime);
    Map<String, List<Keyword>> groupedKeywords = groupKeywords(publicKeywords);
    mav.addObject("publicGroupedKeywords", groupedKeywords);
    // Fill researcher urls
    ResearcherUrls publicResearcherUrls = researcherUrlManager.getPublicResearcherUrls(orcid, lastModifiedTime);
    Map<String, List<ResearcherUrl>> groupedResearcherUrls = groupResearcherUrls(publicResearcherUrls);
    mav.addObject("publicGroupedResearcherUrls", groupedResearcherUrls);
    // Fill emails
    Emails publicEmails = emailManager.getPublicEmails(orcid, lastModifiedTime);
    Map<String, List<Email>> groupedEmails = groupEmails(publicEmails);
    mav.addObject("publicGroupedEmails", groupedEmails);
    // Fill external identifiers
    PersonExternalIdentifiers publicPersonExternalIdentifiers = externalIdentifierManager.getPublicExternalIdentifiers(orcid, lastModifiedTime);
    Map<String, List<PersonExternalIdentifier>> groupedExternalIdentifiers = groupExternalIdentifiers(publicPersonExternalIdentifiers);
    mav.addObject("publicGroupedPersonExternalIdentifiers", groupedExternalIdentifiers);
    LinkedHashMap<Long, WorkForm> minimizedWorksMap = new LinkedHashMap<>();
    LinkedHashMap<Long, Affiliation> affiliationMap = new LinkedHashMap<>();
    LinkedHashMap<Long, Funding> fundingMap = new LinkedHashMap<>();
    LinkedHashMap<Long, PeerReview> peerReviewMap = new LinkedHashMap<>();
    minimizedWorksMap = activityCacheManager.pubMinWorksMap(orcid, lastModifiedTime);
    if (minimizedWorksMap.size() > 0) {
        isProfileEmtpy = false;
    } else {
        mav.addObject("worksEmpty", true);
    }
    affiliationMap = affiliationMap(orcid, lastModifiedTime);
    if (affiliationMap.size() > 0) {
        isProfileEmtpy = false;
    } else {
        mav.addObject("affiliationsEmpty", true);
    }
    fundingMap = fundingMap(orcid, lastModifiedTime);
    if (fundingMap.size() > 0)
        isProfileEmtpy = false;
    else {
        mav.addObject("fundingEmpty", true);
    }
    peerReviewMap = peerReviewMap(orcid, lastModifiedTime);
    if (peerReviewMap.size() > 0) {
        isProfileEmtpy = false;
    } else {
        mav.addObject("peerReviewsEmpty", true);
    }
    ObjectMapper mapper = new ObjectMapper();
    try {
        String worksIdsJson = mapper.writeValueAsString(minimizedWorksMap.keySet());
        String affiliationIdsJson = mapper.writeValueAsString(affiliationMap.keySet());
        String fundingIdsJson = mapper.writeValueAsString(fundingMap.keySet());
        String peerReviewIdsJson = mapper.writeValueAsString(peerReviewMap.keySet());
        mav.addObject("workIdsJson", StringEscapeUtils.escapeEcmaScript(worksIdsJson));
        mav.addObject("affiliationIdsJson", StringEscapeUtils.escapeEcmaScript(affiliationIdsJson));
        mav.addObject("fundingIdsJson", StringEscapeUtils.escapeEcmaScript(fundingIdsJson));
        mav.addObject("peerReviewIdsJson", StringEscapeUtils.escapeEcmaScript(peerReviewIdsJson));
        mav.addObject("isProfileEmpty", isProfileEmtpy);
    } catch (JsonGenerationException e) {
        e.printStackTrace();
    } catch (JsonMappingException e) {
        e.printStackTrace();
    } catch (IOException e) {
        e.printStackTrace();
    }
    if (!profile.isReviewed()) {
        if (isProfileValidForIndex(profile)) {
            int countTokens = orcidOauth2TokenService.findCountByUserName(orcid, lastModifiedTime);
            if (!profile.isAccountNonLocked() || countTokens == 0 || (!CreationMethod.WEBSITE.value().equals(profile.getCreationMethod()) && !CreationMethod.DIRECT.value().equals(profile.getCreationMethod()))) {
                mav.addObject("noIndex", true);
            }
        } else {
            mav.addObject("noIndex", true);
        }
    }
    return mav;
}

Example 29 with Biography

use of org.orcid.jaxb.model.record_v2.Biography in project ORCID-Source by ORCID.

the class MemberV2ApiServiceDelegator_PersonalDetailsTest method testReadPublicScope_PersonalDetails.

@Test
public void testReadPublicScope_PersonalDetails() {
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.READ_PUBLIC);
    Response r = serviceDelegator.viewPersonalDetails(ORCID);
    assertNotNull(r);
    assertEquals(PersonalDetails.class.getName(), r.getEntity().getClass().getName());
    PersonalDetails p = (PersonalDetails) r.getEntity();
    assertEquals("/0000-0000-0000-0003/personal-details", p.getPath());
    Utils.verifyLastModified(p.getLastModifiedDate());
    Utils.verifyLastModified(p.getBiography().getLastModifiedDate());
    Utils.verifyLastModified(p.getName().getLastModifiedDate());
    Utils.verifyLastModified(p.getOtherNames().getLastModifiedDate());
    assertEquals("Biography for 0000-0000-0000-0003", p.getBiography().getContent());
    assertEquals("Credit Name", p.getName().getCreditName().getContent());
    assertEquals("Given Names", p.getName().getGivenNames().getContent());
    assertEquals("Family Name", p.getName().getFamilyName().getContent());
    assertEquals(3, p.getOtherNames().getOtherNames().size());
    boolean found13 = false, found14 = false, found15 = false;
    for (OtherName element : p.getOtherNames().getOtherNames()) {
        if (element.getPutCode() == 13) {
            found13 = true;
        } else if (element.getPutCode() == 14) {
            found14 = true;
        } else if (element.getPutCode() == 15) {
            found15 = true;
        } else {
            fail("Invalid put code " + element.getPutCode());
        }
    }
    assertTrue(found13);
    assertTrue(found14);
    assertTrue(found15);
    String otherOrcid = "0000-0000-0000-0002";
    SecurityContextTestUtils.setUpSecurityContext(otherOrcid, ScopePathType.READ_PUBLIC);
    r = serviceDelegator.viewPersonalDetails(otherOrcid);
    assertNotNull(r);
    assertEquals(PersonalDetails.class.getName(), r.getEntity().getClass().getName());
    p = (PersonalDetails) r.getEntity();
    assertNull(p.getBiography());
    assertNull(p.getName());
    assertNotNull(p.getOtherNames());
    assertTrue(p.getOtherNames().getOtherNames().isEmpty());
}

Example 30 with Biography

use of org.orcid.jaxb.model.record_v2.Biography in project ORCID-Source by ORCID.

the class MemberV2ApiServiceDelegator_PersonalDetailsTest method testViewPersonalDetails.

@Test
public void testViewPersonalDetails() {
    SecurityContextTestUtils.setUpSecurityContext(ORCID, ScopePathType.PERSON_READ_LIMITED);
    Response response = serviceDelegator.viewPersonalDetails(ORCID);
    assertNotNull(response);
    PersonalDetails personalDetails = (PersonalDetails) response.getEntity();
    assertNotNull(personalDetails);
    assertEquals("/0000-0000-0000-0003/personal-details", personalDetails.getPath());
    Utils.verifyLastModified(personalDetails.getLastModifiedDate());
    assertNotNull(personalDetails.getBiography());
    Utils.verifyLastModified(personalDetails.getBiography().getLastModifiedDate());
    assertEquals("Biography for 0000-0000-0000-0003", personalDetails.getBiography().getContent());
    assertEquals(Visibility.PUBLIC.value(), personalDetails.getBiography().getVisibility().value());
    assertEquals("/0000-0000-0000-0003/biography", personalDetails.getBiography().getPath());
    assertNotNull(personalDetails.getName());
    Utils.verifyLastModified(personalDetails.getName().getLastModifiedDate());
    assertNotNull(personalDetails.getName().getCreatedDate().getValue());
    assertEquals("Credit Name", personalDetails.getName().getCreditName().getContent());
    assertEquals("Family Name", personalDetails.getName().getFamilyName().getContent());
    assertEquals("Given Names", personalDetails.getName().getGivenNames().getContent());
    assertEquals(Visibility.PUBLIC.value(), personalDetails.getName().getVisibility().value());
    assertNotNull(personalDetails.getOtherNames());
    Utils.verifyLastModified(personalDetails.getOtherNames().getLastModifiedDate());
    assertEquals(4, personalDetails.getOtherNames().getOtherNames().size());
    for (OtherName otherName : personalDetails.getOtherNames().getOtherNames()) {
        Utils.verifyLastModified(otherName.getLastModifiedDate());
        if (otherName.getPutCode().equals(Long.valueOf(13))) {
            assertEquals("Other Name PUBLIC", otherName.getContent());
            assertEquals(Long.valueOf(0), otherName.getDisplayIndex());
            assertEquals("/0000-0000-0000-0003/other-names/13", otherName.getPath());
            assertEquals("APP-5555555555555555", otherName.getSource().retrieveSourcePath());
            assertEquals(Visibility.PUBLIC.value(), otherName.getVisibility().value());
        } else if (otherName.getPutCode().equals(Long.valueOf(14))) {
            assertEquals("Other Name LIMITED", otherName.getContent());
            assertEquals(Long.valueOf(1), otherName.getDisplayIndex());
            assertEquals("/0000-0000-0000-0003/other-names/14", otherName.getPath());
            assertEquals("APP-5555555555555555", otherName.getSource().retrieveSourcePath());
            assertEquals(Visibility.LIMITED.value(), otherName.getVisibility().value());
        } else if (otherName.getPutCode().equals(Long.valueOf(15))) {
            assertEquals("Other Name PRIVATE", otherName.getContent());
            assertEquals(Long.valueOf(2), otherName.getDisplayIndex());
            assertEquals("/0000-0000-0000-0003/other-names/15", otherName.getPath());
            assertEquals("APP-5555555555555555", otherName.getSource().retrieveSourcePath());
            assertEquals(Visibility.PRIVATE.value(), otherName.getVisibility().value());
        } else if (otherName.getPutCode().equals(Long.valueOf(16))) {
            assertEquals("Other Name SELF LIMITED", otherName.getContent());
            assertEquals(Long.valueOf(3), otherName.getDisplayIndex());
            assertEquals("/0000-0000-0000-0003/other-names/16", otherName.getPath());
            assertEquals("0000-0000-0000-0003", otherName.getSource().retrieveSourcePath());
            assertEquals(Visibility.LIMITED.value(), otherName.getVisibility().value());
        } else {
            fail("Invalid put code found: " + otherName.getPutCode());
        }
    }
    assertEquals("/0000-0000-0000-0003/other-names", personalDetails.getOtherNames().getPath());
    assertEquals("/0000-0000-0000-0003/personal-details", personalDetails.getPath());
}