Examples with ExternalID org.orcid.jaxb.model.record_v2.ExternalID used on opensource projects

Example 86 with ExternalID

use of org.orcid.jaxb.model.record_v2.ExternalID in project ORCID-Source by ORCID.

the class WorkManagerImpl method createWorks.

/**
     * Add a list of works to the given profile
     * 
     * @param works
     *            The list of works that want to be added
     * @param orcid
     *            The id of the user we want to add the works to
     * 
     * @return the work bulk with the put codes of the new works or the error
     *         that indicates why a work can't be added
     */
@Override
@Transactional
public WorkBulk createWorks(String orcid, WorkBulk workBulk) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    Set<ExternalID> existingExternalIdentifiers = buildExistingExternalIdsSet(orcid, sourceEntity.getSourceId());
    if (workBulk.getBulk() != null && !workBulk.getBulk().isEmpty()) {
        List<BulkElement> bulk = workBulk.getBulk();
        //Check bulk size
        if (bulk.size() > maxBulkSize) {
            Locale locale = localeManager.getLocale();
            throw new IllegalArgumentException(messageSource.getMessage("apiError.validation_too_many_elements_in_bulk.exception", new Object[] { maxBulkSize }, locale));
        }
        for (int i = 0; i < bulk.size(); i++) {
            if (Work.class.isAssignableFrom(bulk.get(i).getClass())) {
                Work work = (Work) bulk.get(i);
                try {
                    //Validate the work
                    activityValidator.validateWork(work, sourceEntity, true, true, null);
                    //Validate it is not duplicated
                    if (work.getExternalIdentifiers() != null) {
                        for (ExternalID extId : work.getExternalIdentifiers().getExternalIdentifier()) {
                            if (existingExternalIdentifiers.contains(extId)) {
                                Map<String, String> params = new HashMap<String, String>();
                                params.put("clientName", sourceEntity.getSourceName());
                                throw new OrcidDuplicatedActivityException(params);
                            }
                        }
                    }
                    //Save the work
                    WorkEntity workEntity = jpaJaxbWorkAdapter.toWorkEntity(work);
                    ProfileEntity profile = profileEntityCacheManager.retrieve(orcid);
                    workEntity.setProfile(profile);
                    workEntity.setAddedToProfileDate(new Date());
                    // Set source id 
                    if (sourceEntity.getSourceProfile() != null) {
                        workEntity.setSourceId(sourceEntity.getSourceProfile().getId());
                    }
                    if (sourceEntity.getSourceClient() != null) {
                        workEntity.setClientSourceId(sourceEntity.getSourceClient().getId());
                    }
                    setIncomingWorkPrivacy(workEntity, profile);
                    DisplayIndexCalculatorHelper.setDisplayIndexOnNewEntity(workEntity, true);
                    workDao.persist(workEntity);
                    //Update the element in the bulk
                    Work updatedWork = jpaJaxbWorkAdapter.toWork(workEntity);
                    bulk.set(i, updatedWork);
                    //Add the work extIds to the list of existing external identifiers
                    addExternalIdsToExistingSet(updatedWork, existingExternalIdentifiers);
                } catch (Exception e) {
                    //Get the exception 
                    OrcidError orcidError = orcidCoreExceptionMapper.getOrcidError(e);
                    bulk.set(i, orcidError);
                }
            }
        }
        workDao.flush();
    }
    return workBulk;
}

Example 87 with ExternalID

use of org.orcid.jaxb.model.record_v2.ExternalID in project ORCID-Source by ORCID.

the class WorkManagerImpl method buildExistingExternalIdsSet.

/**
     * Return the list of existing external identifiers for the given user where the source matches the given sourceId
     * 
     * @param orcid
     *          The user we want to add the works to
     * @param sourceId
     *          The client id we are evaluating
     * @return A set of all the existing external identifiers that belongs to the given user and to the given source id                  
     * */
private Set<ExternalID> buildExistingExternalIdsSet(String orcid, String sourceId) {
    Set<ExternalID> existingExternalIds = new HashSet<ExternalID>();
    long lastModifiedTime = getLastModified(orcid);
    List<Work> existingWorks = this.findWorks(orcid, lastModifiedTime);
    for (Work work : existingWorks) {
        //If it is the same source
        if (work.retrieveSourcePath().equals(sourceId)) {
            if (work.getExternalIdentifiers() != null && work.getExternalIdentifiers().getExternalIdentifier() != null) {
                for (ExternalID extId : work.getExternalIdentifiers().getExternalIdentifier()) {
                    //Don't include PART_OF external ids
                    if (!Relationship.PART_OF.equals(extId.getRelationship())) {
                        existingExternalIds.add(extId);
                    }
                }
            }
        }
    }
    return existingExternalIds;
}

Example 88 with ExternalID

use of org.orcid.jaxb.model.record_v2.ExternalID in project ORCID-Source by ORCID.

the class ExternalIDValidatorTest method testValidExtIdsWorksFine_flagOff.

@Test
public void testValidExtIdsWorksFine_flagOff() {
    ExternalIDs extIds = new ExternalIDs();
    ExternalID id1 = new ExternalID();
    id1.setRelationship(null);
    id1.setType("doi");
    id1.setValue("value1");
    id1.setUrl(new Url("http://value1.com"));
    ExternalID id2 = new ExternalID();
    id2.setRelationship(null);
    id2.setType("doi");
    id2.setValue("value1");
    id2.setUrl(new Url("http://value1.com"));
    ExternalID id3 = new ExternalID();
    id3.setRelationship(null);
    id3.setType("doi");
    id3.setValue("value1");
    id3.setUrl(new Url("http://value1.com"));
    extIds.getExternalIdentifier().add(id1);
    extIds.getExternalIdentifier().add(id2);
    extIds.getExternalIdentifier().add(id3);
    validator.validateWorkOrPeerReview(extIds);
}

Example 89 with ExternalID

use of org.orcid.jaxb.model.record_v2.ExternalID in project ORCID-Source by ORCID.

the class ExternalIDValidatorTest method testEmptyRelationshipOnSingleExternalId_flagOn.

@Test(expected = ActivityIdentifierValidationException.class)
public void testEmptyRelationshipOnSingleExternalId_flagOn() {
    validator.setRequireRelationshipOnExternalIdentifier(true);
    ExternalID id1 = new ExternalID();
    id1.setType("doi");
    id1.setValue("value1");
    id1.setUrl(new Url("http://value1.com"));
    validator.validateWorkOrPeerReview(id1);
    //empty relationship        
    id1.setRelationship(null);
    validator.validateWorkOrPeerReview(id1);
    fail("no exception thrown for invalid type");
}

Example 90 with ExternalID

use of org.orcid.jaxb.model.record_v2.ExternalID in project ORCID-Source by ORCID.

the class ExternalIDValidatorTest method testEmptyRelationshipOnNotificationItemExternalIds_flagOff.

@Test
public void testEmptyRelationshipOnNotificationItemExternalIds_flagOff() {
    Item i = new Item();
    Item i2 = new Item();
    Items items = new Items();
    ExternalID id1 = new ExternalID();
    id1.setRelationship(Relationship.SELF);
    id1.setType("doi");
    id1.setValue("value1");
    id1.setUrl(new Url("http://value1.com"));
    ExternalID id2 = new ExternalID();
    id2.setRelationship(null);
    id2.setType("source-work-id");
    id2.setValue("value2");
    id2.setUrl(new Url("http://value1.com"));
    i.setExternalIdentifier(id1);
    i2.setExternalIdentifier(id2);
    items.getItems().add(i);
    items.getItems().add(i2);
    //both valid
    validator.validateNotificationItems(items);
}