Examples with PeerReview org.orcid.jaxb.model.record_v2.PeerReview used on opensource projects

Example 81 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class PublicV2ApiServiceDelegatorImpl method viewPeerReview.

@Override
public Response viewPeerReview(String orcid, Long putCode) {
    PeerReview peerReview = peerReviewManagerReadOnly.getPeerReview(orcid, putCode);
    publicAPISecurityManagerV2.checkIsPublic(peerReview);
    ActivityUtils.setPathToActivity(peerReview, orcid);
    sourceUtilsReadOnly.setSourceName(peerReview);
    return Response.ok(peerReview).build();
}

Example 82 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class ActivityManagerImpl method pubPeerReviewsMap.

public LinkedHashMap<Long, PeerReview> pubPeerReviewsMap(String orcid) {
    List<PeerReview> peerReviews = peerReviewManager.findPeerReviews(orcid);
    LinkedHashMap<Long, PeerReview> peerReviewMap = new LinkedHashMap<>();
    if (peerReviews != null) {
        if (!peerReviews.isEmpty()) {
            for (PeerReview peerReview : peerReviews) {
                if (peerReview.getVisibility().equals(Visibility.PUBLIC)) {
                    peerReviewMap.put(peerReview.getPutCode(), peerReview);
                }
            }
        }
    }
    return peerReviewMap;
}

Example 83 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class SetUpClientsAndUsers method clearRegistry.

private boolean clearRegistry(OrcidProfile existingProfile, Map<String, String> params) {
    if (existingProfile != null) {
        String orcid = params.get(ORCID);
        String email = params.get(EMAIL);
        // exception
        if (existingProfile.getOrcidBio() == null || existingProfile.getOrcidBio().getContactDetails() == null || existingProfile.getOrcidBio().getContactDetails().retrievePrimaryEmail() == null || !email.equals(existingProfile.getOrcidBio().getContactDetails().retrievePrimaryEmail().getValue())) {
            throw new ApplicationException("User with email " + params.get(EMAIL) + " must have orcid id '" + orcid + "' but it is '" + existingProfile.getOrcidId() + "'");
        }
        // Check if the profile have the same password, if not, update the
        // password
        String encryptedPassword = encryptionManager.hashForInternalUse(params.get(PASSWORD));
        if (!encryptedPassword.equals(existingProfile.getPassword())) {
            existingProfile.setPassword(params.get(PASSWORD));
            orcidProfileManager.updatePasswordInformation(existingProfile);
        }
        // Set default names
        Name name = new Name();
        name.setCreditName(new CreditName(params.get(CREDIT_NAME)));
        name.setGivenNames(new GivenNames(params.get(GIVEN_NAMES)));
        name.setFamilyName(new FamilyName(params.get(FAMILY_NAMES)));
        name.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(OrcidVisibilityDefaults.NAMES_DEFAULT.getVisibility().value()));
        if (recordNameManager.exists(orcid)) {
            recordNameManager.updateRecordName(orcid, name);
        } else {
            recordNameManager.createRecordName(orcid, name);
        }
        profileDao.updatePreferences(orcid, true, true, true, true, org.orcid.jaxb.model.common_v2.Visibility.PUBLIC, true, 1f);
        // Set default bio
        org.orcid.jaxb.model.record_v2.Biography bio = biographyManager.getBiography(orcid);
        if (bio == null || bio.getContent() == null) {
            bio = new org.orcid.jaxb.model.record_v2.Biography(params.get(BIO));
            bio.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(OrcidVisibilityDefaults.BIOGRAPHY_DEFAULT.getVisibility().value()));
            biographyManager.createBiography(orcid, bio);
        } else {
            bio.setContent(params.get(BIO));
            bio.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(OrcidVisibilityDefaults.BIOGRAPHY_DEFAULT.getVisibility().value()));
            biographyManager.updateBiography(orcid, bio);
        }
        // Remove other names
        List<OtherNameEntity> otherNames = otherNameDao.getOtherNames(orcid, 0L);
        if (otherNames != null && !otherNames.isEmpty()) {
            for (OtherNameEntity otherName : otherNames) {
                otherNameDao.deleteOtherName(otherName);
            }
        }
        // Remove keywords
        List<ProfileKeywordEntity> keywords = profileKeywordDao.getProfileKeywords(orcid, 0L);
        if (keywords != null && !keywords.isEmpty()) {
            for (ProfileKeywordEntity keyword : keywords) {
                profileKeywordDao.deleteProfileKeyword(keyword);
            }
        }
        // Remove researcher urls
        List<ResearcherUrlEntity> rUrls = researcherUrlDao.getResearcherUrls(orcid, 0L);
        if (rUrls != null && !rUrls.isEmpty()) {
            for (ResearcherUrlEntity rUrl : rUrls) {
                researcherUrlDao.deleteResearcherUrl(orcid, rUrl.getId());
            }
        }
        // Remove external ids
        List<ExternalIdentifierEntity> extIds = externalIdentifierDao.getExternalIdentifiers(orcid, System.currentTimeMillis());
        if (extIds != null && !extIds.isEmpty()) {
            for (ExternalIdentifierEntity extId : extIds) {
                externalIdentifierDao.removeExternalIdentifier(orcid, extId.getId());
            }
        }
        // Remove addresses
        List<AddressEntity> addresses = addressDao.getAddresses(orcid, 0L);
        if (addresses != null && !addresses.isEmpty()) {
            for (AddressEntity address : addresses) {
                addressDao.deleteAddress(orcid, address.getId());
            }
        }
        // Remove emails
        List<EmailEntity> emails = emailDao.findByOrcid(orcid, profileEntityManager.getLastModified(orcid));
        if (emails != null && !emails.isEmpty()) {
            for (EmailEntity rc2Email : emails) {
                if (!params.get(EMAIL).equals(rc2Email.getId())) {
                    emailDao.removeEmail(orcid, rc2Email.getId());
                }
            }
        }
        // Remove notifications
        List<NotificationEntity> notifications = notificationDao.findByOrcid(orcid, true, 0, 10000);
        if (notifications != null && !notifications.isEmpty()) {
            for (NotificationEntity notification : notifications) {
                notificationDao.deleteNotificationItemByNotificationId(notification.getId());
                notificationDao.deleteNotificationWorkByNotificationId(notification.getId());
                notificationDao.deleteNotificationById(notification.getId());
            }
        }
        // Remove works
        List<WorkLastModifiedEntity> works = workDao.getWorkLastModifiedList(orcid);
        if (works != null && !works.isEmpty()) {
            for (WorkLastModifiedEntity work : works) {
                workDao.removeWork(orcid, work.getId());
            }
        }
        // Remove affiliations
        List<OrgAffiliationRelationEntity> affiliations = orgAffiliationRelationDao.getByUser(orcid);
        if (affiliations != null && !affiliations.isEmpty()) {
            for (OrgAffiliationRelationEntity affiliation : affiliations) {
                orgAffiliationRelationDao.remove(affiliation.getId());
            }
        }
        // Remove fundings
        List<ProfileFundingEntity> fundings = profileFundingDao.getByUser(orcid, profileEntityManager.getLastModified(orcid));
        if (fundings != null && !fundings.isEmpty()) {
            for (ProfileFundingEntity funding : fundings) {
                profileFundingDao.removeProfileFunding(orcid, funding.getId());
            }
        }
        // Remove peer reviews
        List<PeerReviewEntity> peerReviews = peerReviewDao.getByUser(orcid, profileEntityManager.getLastModified(orcid));
        if (peerReviews != null && !peerReviews.isEmpty()) {
            for (PeerReviewEntity peerReview : peerReviews) {
                peerReviewDao.removePeerReview(orcid, peerReview.getId());
            }
        }
        // Remove 3d party links
        List<OrcidOauth2TokenDetail> tokenDetails = orcidOauth2TokenDetailDao.findByUserName(orcid);
        if (tokenDetails != null && !tokenDetails.isEmpty()) {
            for (OrcidOauth2TokenDetail token : tokenDetails) {
                orcidOauth2TokenDetailDao.remove(token.getId());
            }
        }
        // Unlock just in case it is locked
        profileDao.unlockProfile(orcid);
        return true;
    }
    return false;
}

Example 84 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class PublicProfileVisibilityTest method peerReviewPrivacyTest.

@Test
public void peerReviewPrivacyTest() throws InterruptedException, JSONException, URISyntaxException {
    // Create peer review group
    String accessToken = getAccessToken(getScopes(ScopePathType.PERSON_READ_LIMITED, ScopePathType.PERSON_UPDATE, ScopePathType.ACTIVITIES_READ_LIMITED, ScopePathType.ACTIVITIES_UPDATE));
    List<GroupIdRecord> groups = createGroupIds();
    assertNotNull(groups);
    assertTrue(groups.size() > 0);
    GroupIdRecord g1 = groups.get(0);
    // Create peer review
    long time = System.currentTimeMillis();
    PeerReview peerReview = new PeerReview();
    peerReview.setGroupId(g1.getGroupId());
    ExternalIDs extIds = new ExternalIDs();
    peerReview.setExternalIdentifiers(extIds);
    peerReview.getExternalIdentifiers().getExternalIdentifier().clear();
    ExternalID wExtId = new ExternalID();
    wExtId.setValue("Work Id " + time);
    wExtId.setType(WorkExternalIdentifierType.AGR.value());
    wExtId.setRelationship(Relationship.SELF);
    peerReview.getExternalIdentifiers().getExternalIdentifier().add(wExtId);
    Organization organization = new Organization();
    organization.setName("My org name " + System.currentTimeMillis());
    OrganizationAddress address = new OrganizationAddress();
    address.setCity("Imagination city");
    address.setCountry(Iso3166Country.US);
    organization.setAddress(address);
    peerReview.setOrganization(organization);
    peerReview.setRole(Role.CHAIR);
    peerReview.setType(PeerReviewType.EVALUATION);
    peerReview.setCompletionDate(new FuzzyDate(new Year(2016), new Month(1), new Day(1)));
    ClientResponse postResponse = memberV2ApiClient.createPeerReviewXml(this.getUser1OrcidId(), peerReview, accessToken);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    ClientResponse getResponse = memberV2ApiClient.viewLocationXml(postResponse.getLocation(), accessToken);
    assertEquals(Response.Status.OK.getStatusCode(), getResponse.getStatus());
    peerReview = getResponse.getEntity(PeerReview.class);
    showMyOrcidPage();
    changePeerReviewVisibility(g1.getName(), Visibility.PRIVATE.name());
    try {
        // Verify it doesn't appear in the public page
        showPublicProfilePage(getUser1OrcidId());
        peerReviewAppearsInPublicPage(g1.getName());
        fail();
    } catch (Exception e) {
    }
    showMyOrcidPage();
    changePeerReviewVisibility(g1.getName(), Visibility.LIMITED.name());
    try {
        // Verify it doesn't appear in the public page
        showPublicProfilePage(getUser1OrcidId());
        peerReviewAppearsInPublicPage(g1.getName());
        fail();
    } catch (Exception e) {
    }
    showMyOrcidPage();
    changePeerReviewVisibility(g1.getName(), Visibility.PUBLIC.name());
    showPublicProfilePage(getUser1OrcidId());
    peerReviewAppearsInPublicPage(g1.getName());
    // Rollback
    ClientResponse deleteResponse = memberV2ApiClient.deletePeerReviewXml(this.getUser1OrcidId(), peerReview.getPutCode(), accessToken);
    assertNotNull(deleteResponse);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
}

Example 85 with PeerReview

use of org.orcid.jaxb.model.record_v2.PeerReview in project ORCID-Source by ORCID.

the class JpaJaxbPeerReviewAdapterTest method fromOrgAffiliationRelationEntityToEducation.

@Test
public void fromOrgAffiliationRelationEntityToEducation() {
    PeerReviewEntity entity = getPeerReviewEntity();
    assertNotNull(entity);
    PeerReview peerReview = jpaJaxbPeerReviewAdapter.toPeerReview(entity);
    assertNotNull(peerReview);
    assertEquals(Long.valueOf(12345), peerReview.getPutCode());
    assertEquals("private", peerReview.getVisibility().value());
    assertEquals("orcid-generated:12345", peerReview.getGroupId());
    // Subject
    assertNotNull(peerReview.getSubjectExternalIdentifier());
    assertEquals("peer-review:subject-external-identifier-id", peerReview.getSubjectExternalIdentifier().getValue());
    assertEquals("source-work-id", peerReview.getSubjectExternalIdentifier().getType());
    assertEquals("peer-review:subject-container-name", peerReview.getSubjectContainerName().getContent());
    assertEquals("peer-review:subject-name", peerReview.getSubjectName().getTitle().getContent());
    assertEquals("peer-review:subject-translated-name", peerReview.getSubjectName().getTranslatedTitle().getContent());
    assertEquals("en", peerReview.getSubjectName().getTranslatedTitle().getLanguageCode());
    assertEquals(WorkType.BOOK_REVIEW.value(), peerReview.getSubjectType().value());
    assertEquals("peer-review:subject-url", peerReview.getSubjectUrl().getValue());
    // Fields
    assertNotNull(peerReview.getExternalIdentifiers());
    assertNotNull(peerReview.getExternalIdentifiers().getExternalIdentifier());
    assertEquals(1, peerReview.getExternalIdentifiers().getExternalIdentifier().size());
    assertEquals("peer-review:external-identifier-id", peerReview.getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
    assertEquals("source-work-id", peerReview.getExternalIdentifiers().getExternalIdentifier().get(0).getType());
    assertEquals(Role.MEMBER.value(), peerReview.getRole().value());
    assertEquals(PeerReviewType.EVALUATION.value(), peerReview.getType().value());
    assertEquals("peer-review:url", peerReview.getUrl().getValue());
    assertNotNull(peerReview.getCompletionDate());
    assertEquals("2015", peerReview.getCompletionDate().getYear().getValue());
    assertEquals("01", peerReview.getCompletionDate().getMonth().getValue());
    assertEquals("01", peerReview.getCompletionDate().getDay().getValue());
    assertNotNull(peerReview.getOrganization());
    assertEquals("org:name", peerReview.getOrganization().getName());
    assertNotNull(peerReview.getOrganization().getAddress());
    assertEquals("org:city", peerReview.getOrganization().getAddress().getCity());
    assertEquals("org:region", peerReview.getOrganization().getAddress().getRegion());
    assertNotNull(peerReview.getSource());
    assertEquals("APP-000000001", peerReview.getSource().retrieveSourcePath());
}