Examples with Record org.orcid.jaxb.model.record_v2.Record used on opensource projects

Example 91 with Record

use of org.orcid.jaxb.model.record_v2.Record in project ORCID-Source by ORCID.

the class PublicAPISecurityManagerV2Test method checkIsPublicRecordTest.

@Test
public void checkIsPublicRecordTest() {
    Record r = getRecordElement();
    publicAPISecurityManagerV2.filter(r);
    // Verify activities - nothing filtered
    ActivitiesSummary as = r.getActivitiesSummary();
    assertEquals(3, as.getEducations().getSummaries().size());
    assertContainerContainsOnlyPublicElements(as.getEducations());
    assertEquals(3, as.getEmployments().getSummaries().size());
    assertContainerContainsOnlyPublicElements(as.getEmployments());
    assertEquals(3, as.getFundings().getFundingGroup().size());
    assertGroupContainsOnlyPublicElements(as.getFundings());
    assertEquals(3, as.getPeerReviews().getPeerReviewGroup().size());
    assertGroupContainsOnlyPublicElements(as.getPeerReviews());
    assertEquals(3, as.getWorks().getWorkGroup().size());
    assertGroupContainsOnlyPublicElements(as.getWorks());
    // Verify bio sections - nothing filtered
    Person p = r.getPerson();
    assertEquals(3, p.getAddresses().getAddress().size());
    assertAllArePublic(p.getAddresses().getAddress());
    assertEquals(3, p.getEmails().getEmails().size());
    assertAllArePublic(p.getEmails().getEmails());
    assertEquals(3, p.getExternalIdentifiers().getExternalIdentifiers().size());
    assertAllArePublic(p.getExternalIdentifiers().getExternalIdentifiers());
    assertEquals(3, p.getKeywords().getKeywords().size());
    assertAllArePublic(p.getKeywords().getKeywords());
    assertEquals(3, p.getOtherNames().getOtherNames().size());
    assertAllArePublic(p.getOtherNames().getOtherNames());
    assertEquals(3, p.getResearcherUrls().getResearcherUrls().size());
    assertAllArePublic(p.getResearcherUrls().getResearcherUrls());
    assertNotNull(p.getBiography());
    assertNotNull(p.getName());
    // Filter biography, name, educations and funding
    r = getRecordElement();
    r.getPerson().getBiography().setVisibility(Visibility.LIMITED);
    r.getPerson().getName().setVisibility(Visibility.LIMITED);
    setVisibility(r.getActivitiesSummary().getEducations().getSummaries(), Visibility.LIMITED, Visibility.PRIVATE, Visibility.LIMITED);
    setVisibility(r.getActivitiesSummary().getFundings(), Visibility.LIMITED, Visibility.PRIVATE, Visibility.LIMITED);
    publicAPISecurityManagerV2.filter(r);
    // Verify activities - educations and funding filtered
    as = r.getActivitiesSummary();
    assertNotNull(as.getEducations());
    assertTrue(as.getEducations().getSummaries().isEmpty());
    assertEquals(3, as.getEmployments().getSummaries().size());
    assertTrue(as.getFundings().getFundingGroup().isEmpty());
    assertEquals(3, as.getPeerReviews().getPeerReviewGroup().size());
    assertEquals(3, as.getWorks().getWorkGroup().size());
    // Verify bio sections - bio and name filtered
    p = r.getPerson();
    assertEquals(3, p.getAddresses().getAddress().size());
    assertEquals(3, p.getEmails().getEmails().size());
    assertEquals(3, p.getExternalIdentifiers().getExternalIdentifiers().size());
    assertEquals(3, p.getKeywords().getKeywords().size());
    assertEquals(3, p.getOtherNames().getOtherNames().size());
    assertEquals(3, p.getResearcherUrls().getResearcherUrls().size());
    assertNull(p.getBiography());
    assertNull(p.getName());
    // Filter emails, external identifiers, peer reviews and works
    r = getRecordElement();
    setVisibility(r.getPerson().getEmails().getEmails(), Visibility.LIMITED, Visibility.PRIVATE, Visibility.LIMITED);
    setVisibility(r.getPerson().getExternalIdentifiers().getExternalIdentifiers(), Visibility.LIMITED, Visibility.PRIVATE, Visibility.LIMITED);
    setVisibility(r.getActivitiesSummary().getPeerReviews(), Visibility.LIMITED, Visibility.PRIVATE, Visibility.LIMITED);
    setVisibility(r.getActivitiesSummary().getWorks(), Visibility.LIMITED, Visibility.PRIVATE, Visibility.LIMITED);
    publicAPISecurityManagerV2.filter(r);
    // Verify activities - peer reviews and works filtered
    as = r.getActivitiesSummary();
    assertEquals(3, as.getEducations().getSummaries().size());
    assertEquals(3, as.getEmployments().getSummaries().size());
    assertEquals(3, as.getFundings().getFundingGroup().size());
    assertTrue(as.getPeerReviews().getPeerReviewGroup().isEmpty());
    assertTrue(as.getWorks().getWorkGroup().isEmpty());
    // Verify bio sections - emails, external identifiers filtered
    p = r.getPerson();
    assertEquals(3, p.getAddresses().getAddress().size());
    assertNotNull(p.getEmails());
    assertTrue(p.getEmails().getEmails().isEmpty());
    assertNotNull(p.getExternalIdentifiers());
    assertTrue(p.getExternalIdentifiers().getExternalIdentifiers().isEmpty());
    assertEquals(3, p.getKeywords().getKeywords().size());
    assertEquals(3, p.getOtherNames().getOtherNames().size());
    assertEquals(3, p.getResearcherUrls().getResearcherUrls().size());
    assertNotNull(p.getBiography());
    assertNotNull(p.getName());
    // Filter keywords and other names
    r = getRecordElement();
    setVisibility(r.getPerson().getOtherNames().getOtherNames(), Visibility.LIMITED, Visibility.PRIVATE, Visibility.LIMITED);
    setVisibility(r.getPerson().getKeywords().getKeywords(), Visibility.LIMITED, Visibility.PRIVATE, Visibility.LIMITED);
    publicAPISecurityManagerV2.filter(r);
    // Verify activities - nothing filtered
    as = r.getActivitiesSummary();
    assertEquals(3, as.getEducations().getSummaries().size());
    assertEquals(3, as.getEmployments().getSummaries().size());
    assertEquals(3, as.getFundings().getFundingGroup().size());
    assertEquals(3, as.getPeerReviews().getPeerReviewGroup().size());
    assertEquals(3, as.getWorks().getWorkGroup().size());
    // Verify bio sections - keywords and other names filtered
    p = r.getPerson();
    assertEquals(3, p.getAddresses().getAddress().size());
    assertEquals(3, p.getEmails().getEmails().size());
    assertEquals(3, p.getExternalIdentifiers().getExternalIdentifiers().size());
    assertNotNull(p.getKeywords());
    assertTrue(p.getKeywords().getKeywords().isEmpty());
    assertNotNull(p.getOtherNames());
    assertTrue(p.getOtherNames().getOtherNames().isEmpty());
    assertEquals(3, p.getResearcherUrls().getResearcherUrls().size());
    assertNotNull(p.getBiography());
    assertNotNull(p.getName());
}

Example 92 with Record

use of org.orcid.jaxb.model.record_v2.Record in project nikita-noark5-core by HiOA-ABI.

the class RecordDeserializer method deserialize.

@Override
public Record deserialize(JsonParser jsonParser, DeserializationContext dc) throws IOException {
    Record record = new Record();
    ObjectNode objectNode = mapper.readTree(jsonParser);
    // Deserialise general properties
    CommonUtils.Hateoas.Deserialize.deserialiseNoarkSystemIdEntity(record, objectNode);
    CommonUtils.Hateoas.Deserialize.deserialiseNoarkCreateEntity(record, objectNode);
    // Deserialize archivedBy
    JsonNode currentNode = objectNode.get(RECORD_ARCHIVED_BY);
    if (currentNode != null) {
        record.setArchivedBy(currentNode.textValue());
        objectNode.remove(RECORD_ARCHIVED_BY);
    }
    // Deserialize archivedDate
    currentNode = objectNode.get(RECORD_ARCHIVED_DATE);
    if (currentNode != null) {
        try {
            Date parsedDate = Deserialize.parseDateTimeFormat(currentNode.textValue());
            record.setArchivedDate(parsedDate);
            objectNode.remove(RECORD_ARCHIVED_DATE);
        } catch (ParseException e) {
            throw new NikitaMalformedInputDataException("The registrering you tried to create " + "has a malformed arkivertDato. Make sure format is " + NOARK_DATE_FORMAT_PATTERN);
        }
    }
    // If there are additional throw a malformed input exception
    if (objectNode.size() != 0) {
        throw new NikitaMalformedInputDataException("The registrering you tried to create is malformed. The " + "following fields are not recognised as registrering fields [" + CommonUtils.Hateoas.Deserialize.checkNodeObjectEmpty(objectNode) + "]");
    }
    return record;
}

Example 93 with Record

use of org.orcid.jaxb.model.record_v2.Record in project nikita-noark5-core by HiOA-ABI.

the class RecordService method findRecordByOwnerPaginated.

// All READ operations
public List<Record> findRecordByOwnerPaginated(Integer top, Integer skip) {
    if (top == null || top > maxPageSize) {
        top = maxPageSize;
    }
    if (skip == null) {
        skip = 0;
    }
    String loggedInUser = SecurityContextHolder.getContext().getAuthentication().getName();
    CriteriaBuilder criteriaBuilder = entityManager.getCriteriaBuilder();
    CriteriaQuery<Record> criteriaQuery = criteriaBuilder.createQuery(Record.class);
    Root<Record> from = criteriaQuery.from(Record.class);
    CriteriaQuery<Record> select = criteriaQuery.select(from);
    criteriaQuery.where(criteriaBuilder.equal(from.get("ownedBy"), loggedInUser));
    TypedQuery<Record> typedQuery = entityManager.createQuery(select);
    typedQuery.setFirstResult(skip);
    typedQuery.setMaxResults(maxPageSize);
    return typedQuery.getResultList();
}

Example 94 with Record

use of org.orcid.jaxb.model.record_v2.Record in project nikita-noark5-core by HiOA-ABI.

the class RecordService method deleteEntity.

// All DELETE operations
@Override
public void deleteEntity(@NotNull String systemID) {
    Record record = getRecordOrThrow(systemID);
    // See issue for a description of why this code was written this way
    // https://github.com/HiOA-ABI/nikita-noark5-core/issues/82
    //Query q = entityManager.createNativeQuery("DELETE FROM fonds_fonds_creator WHERE pk_fonds_creator_id  = :id ;");
    //q.setParameter("id", record.getId());
    //q.executeUpdate();
    entityManager.remove(record);
    entityManager.flush();
    entityManager.clear();
}

Example 95 with Record

use of org.orcid.jaxb.model.record_v2.Record in project nikita-noark5-core by HiOA-ABI.

the class RecordService method createDocumentDescriptionAssociatedWithRecord.

@Override
public DocumentDescription createDocumentDescriptionAssociatedWithRecord(String systemID, DocumentDescription documentDescription) {
    DocumentDescription persistedDocumentDescription = null;
    Record record = recordRepository.findBySystemIdOrderBySystemId(systemID);
    if (record == null) {
        String info = INFO_CANNOT_FIND_OBJECT + " Record, using systemID " + systemID;
        logger.info(info);
        throw new NoarkEntityNotFoundException(info);
    } else {
        TreeSet<Record> records = (TreeSet<Record>) documentDescription.getReferenceRecord();
        if (records == null) {
            records = new TreeSet<>();
            documentDescription.setReferenceRecord(records);
        }
        records.add(record);
        Set<DocumentDescription> documentDescriptions = record.getReferenceDocumentDescription();
        documentDescriptions.add(documentDescription);
        persistedDocumentDescription = documentDescriptionService.save(documentDescription);
    }
    return persistedDocumentDescription;
}