Examples with Visibility org.orcid.jaxb.model.v3.dev1.common.Visibility used on opensource projects

Example 51 with Visibility

use of org.orcid.jaxb.model.v3.dev1.common.Visibility in project ORCID-Source by ORCID.

the class ProfileEntityManagerImpl method clearRecord.

/**
 * Clears all record info but the email addresses, that stay unmodified
 */
private void clearRecord(String orcid, Boolean disableTokens) {
    // Remove works
    workManager.removeAllWorks(orcid);
    // Remove funding
    fundingManager.removeAllFunding(orcid);
    // Remove affiliations
    affiliationsManager.removeAllAffiliations(orcid);
    // Remove peer reviews
    peerReviewManager.removeAllPeerReviews(orcid);
    // Remove addresses
    addressManager.removeAllAddress(orcid);
    // Remove external identifiers
    externalIdentifierManager.removeAllExternalIdentifiers(orcid);
    // Remove researcher urls
    researcherUrlManager.removeAllResearcherUrls(orcid);
    // Remove other names
    otherNameManager.removeAllOtherNames(orcid);
    // Remove keywords
    profileKeywordManager.removeAllKeywords(orcid);
    // Remove biography
    if (biographyManager.exists(orcid)) {
        Biography deprecatedBio = new Biography();
        deprecatedBio.setContent(null);
        deprecatedBio.setVisibility(Visibility.PRIVATE);
        biographyManager.updateBiography(orcid, deprecatedBio);
    }
    // Set the deactivated names
    if (recordNameManager.exists(orcid)) {
        Name name = new Name();
        name.setCreditName(new CreditName());
        name.setGivenNames(new GivenNames("Given Names Deactivated"));
        name.setFamilyName(new FamilyName("Family Name Deactivated"));
        name.setVisibility(Visibility.PUBLIC);
        name.setPath(orcid);
        recordNameManager.updateRecordName(orcid, name);
    }
    // 
    userConnectionDao.deleteByOrcid(orcid);
    if (disableTokens) {
        // Disable any token that belongs to this record
        orcidOauth2TokenDetailService.disableAccessTokenByUserOrcid(orcid, RevokeReason.RECORD_DEACTIVATED);
    }
    // Change default visibility to private
    profileDao.updateDefaultVisibility(orcid, org.orcid.jaxb.model.common_v2.Visibility.PRIVATE);
}

Example 52 with Visibility

use of org.orcid.jaxb.model.v3.dev1.common.Visibility in project ORCID-Source by ORCID.

the class ProfileKeywordManagerImpl method updateKeyword.

@Override
@Transactional
public Keyword updateKeyword(String orcid, Long putCode, Keyword keyword, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    ProfileKeywordEntity updatedEntity = profileKeywordDao.getProfileKeyword(orcid, putCode);
    Visibility originalVisibility = Visibility.fromValue(updatedEntity.getVisibility().value());
    // Save the original source
    String existingSourceId = updatedEntity.getSourceId();
    String existingClientSourceId = updatedEntity.getClientSourceId();
    // Validate the keyword
    PersonValidator.validateKeyword(keyword, sourceEntity, false, isApiRequest, originalVisibility);
    // Validate it is not duplicated
    List<ProfileKeywordEntity> existingKeywords = profileKeywordDao.getProfileKeywords(orcid, getLastModified(orcid));
    for (ProfileKeywordEntity existing : existingKeywords) {
        if (isDuplicated(existing, keyword, sourceEntity)) {
            Map<String, String> params = new HashMap<String, String>();
            params.put("type", "keyword");
            params.put("value", keyword.getContent());
            throw new OrcidDuplicatedElementException(params);
        }
    }
    orcidSecurityManager.checkSource(updatedEntity);
    adapter.toProfileKeywordEntity(keyword, updatedEntity);
    updatedEntity.setLastModified(new Date());
    // Be sure it doesn't overwrite the source
    updatedEntity.setSourceId(existingSourceId);
    updatedEntity.setClientSourceId(existingClientSourceId);
    profileKeywordDao.merge(updatedEntity);
    return adapter.toKeyword(updatedEntity);
}

Example 53 with Visibility

use of org.orcid.jaxb.model.v3.dev1.common.Visibility in project ORCID-Source by ORCID.

the class WorkManagerImpl method updateWork.

@Override
@Transactional
public Work updateWork(String orcid, Work work, boolean isApiRequest) {
    WorkEntity workEntity = workDao.getWork(orcid, work.getPutCode());
    Visibility originalVisibility = Visibility.fromValue(workEntity.getVisibility().value());
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    // Save the original source
    String existingSourceId = workEntity.getSourceId();
    String existingClientSourceId = workEntity.getClientSourceId();
    if (isApiRequest) {
        activityValidator.validateWork(work, sourceEntity, false, isApiRequest, Visibility.fromValue(workEntity.getVisibility().value()));
        List<Work> existingWorks = this.findWorks(orcid);
        for (Work existing : existingWorks) {
            // Dont compare the updated peer review with the DB version
            if (!existing.getPutCode().equals(work.getPutCode())) {
                activityValidator.checkExternalIdentifiersForDuplicates(work.getExternalIdentifiers(), existing.getExternalIdentifiers(), existing.getSource(), sourceEntity);
            }
        }
    } else {
        // validate external ID vocab
        externalIDValidator.validateWorkOrPeerReview(work.getExternalIdentifiers());
    }
    orcidSecurityManager.checkSource(workEntity);
    jpaJaxbWorkAdapter.toWorkEntity(work, workEntity);
    workEntity.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(originalVisibility.value()));
    // Be sure it doesn't overwrite the source
    workEntity.setSourceId(existingSourceId);
    workEntity.setClientSourceId(existingClientSourceId);
    workDao.merge(workEntity);
    workDao.flush();
    notificationManager.sendAmendEmail(orcid, AmendedSection.WORK, createItemList(workEntity));
    return jpaJaxbWorkAdapter.toWork(workEntity);
}

Example 54 with Visibility

use of org.orcid.jaxb.model.v3.dev1.common.Visibility in project ORCID-Source by ORCID.

the class ContributorUtils method filterContributorPrivateData.

public void filterContributorPrivateData(Funding funding) {
    if (funding.getContributors() != null && funding.getContributors().getContributor() != null) {
        for (FundingContributor contributor : funding.getContributors().getContributor()) {
            contributor.setContributorEmail(null);
            if (!PojoUtil.isEmpty(contributor.getContributorOrcid())) {
                String contributorOrcid = contributor.getContributorOrcid().getPath();
                if (profileEntityManager.orcidExists(contributorOrcid)) {
                    // contributor is an ORCID user - visibility of user's
                    // name in record must be taken into account
                    ProfileEntity profileEntity = profileEntityCacheManager.retrieve(contributorOrcid);
                    String publicContributorCreditName = cacheManager.getPublicCreditName(profileEntity);
                    CreditName creditName = new CreditName(publicContributorCreditName != null ? publicContributorCreditName : "");
                    contributor.setCreditName(creditName);
                }
            }
        }
    }
}

Example 55 with Visibility

use of org.orcid.jaxb.model.v3.dev1.common.Visibility in project ORCID-Source by ORCID.

the class ExternalIdentifierForm method toPersonExternalIdentifier.

public PersonExternalIdentifier toPersonExternalIdentifier() {
    PersonExternalIdentifier result = new PersonExternalIdentifier();
    if (putCode != null) {
        result.setPutCode(Long.valueOf(putCode));
    }
    result.setDisplayIndex(displayIndex);
    if (visibility != null && visibility.getVisibility() != null) {
        result.setVisibility(org.orcid.jaxb.model.v3.dev1.common.Visibility.fromValue(visibility.getVisibility().value()));
    }
    if (url != null) {
        result.setUrl(new Url(url));
    }
    result.setType(commonName);
    result.setValue(reference);
    return result;
}