Examples with Funding org.orcid.jaxb.model.v3.dev1.record.Funding used on opensource projects

Example 56 with Funding

use of org.orcid.jaxb.model.v3.dev1.record.Funding in project ORCID-Source by ORCID.

the class JSONFundingExternalIdentifiersConverterV3Test method testConvertTo.

@Test
public void testConvertTo() throws JAXBException {
    Funding funding = getFunding();
    assertEquals("{\"fundingExternalIdentifier\":[{\"type\":\"GRANT_NUMBER\",\"value\":\"funding:external-identifier-value\",\"url\":{\"value\":\"http://tempuri.org\"},\"relationship\":\"SELF\"},{\"type\":\"GRANT_NUMBER\",\"value\":\"funding:external-identifier-value2\",\"url\":{\"value\":\"http://tempuri.org/2\"},\"relationship\":\"SELF\"}]}", converter.convertTo(funding.getExternalIdentifiers(), null));
}

Example 57 with Funding

use of org.orcid.jaxb.model.v3.dev1.record.Funding in project ORCID-Source by ORCID.

the class JSONFundingExternalIdentifiersConverterV3Test method getFunding.

private Funding getFunding() throws JAXBException {
    JAXBContext context = JAXBContext.newInstance(new Class[] { Funding.class });
    Unmarshaller unmarshaller = context.createUnmarshaller();
    String name = "/record_3.0_dev1/samples/read_samples/funding-full-3.0_dev1.xml";
    InputStream inputStream = getClass().getResourceAsStream(name);
    return (Funding) unmarshaller.unmarshal(inputStream);
}

Example 58 with Funding

use of org.orcid.jaxb.model.v3.dev1.record.Funding in project ORCID-Source by ORCID.

the class OrcidSecurityManagerImpl method checkAndFilter.

@Override
public void checkAndFilter(String orcid, ActivitiesSummary activities) {
    if (activities == null) {
        return;
    }
    // Check the token
    isMyToken(orcid);
    // Distinctions
    if (activities.getDistinctions() != null) {
        checkAndFilter(orcid, activities.getDistinctions().getSummaries(), READ_AFFILIATIONS_REQUIRED_SCOPE, true);
    }
    // Educations
    if (activities.getEducations() != null) {
        checkAndFilter(orcid, activities.getEducations().getSummaries(), READ_AFFILIATIONS_REQUIRED_SCOPE, true);
    }
    // Employments
    if (activities.getEmployments() != null) {
        checkAndFilter(orcid, activities.getEmployments().getSummaries(), READ_AFFILIATIONS_REQUIRED_SCOPE, true);
    }
    // Invited positions
    if (activities.getInvitedPositions() != null) {
        checkAndFilter(orcid, activities.getInvitedPositions().getSummaries(), READ_AFFILIATIONS_REQUIRED_SCOPE, true);
    }
    // Memberships
    if (activities.getMemberships() != null) {
        checkAndFilter(orcid, activities.getMemberships().getSummaries(), READ_AFFILIATIONS_REQUIRED_SCOPE, true);
    }
    // Qualifications
    if (activities.getQualifications() != null) {
        checkAndFilter(orcid, activities.getQualifications().getSummaries(), READ_AFFILIATIONS_REQUIRED_SCOPE, true);
    }
    // Services
    if (activities.getServices() != null) {
        checkAndFilter(orcid, activities.getServices().getSummaries(), READ_AFFILIATIONS_REQUIRED_SCOPE, true);
    }
    // Funding
    if (activities.getFundings() != null) {
        Iterator<FundingGroup> groupIt = activities.getFundings().getFundingGroup().iterator();
        while (groupIt.hasNext()) {
            FundingGroup group = groupIt.next();
            // Filter the list of elements
            checkAndFilter(orcid, group.getFundingSummary(), READ_FUNDING_REQUIRED_SCOPE, true);
            // Clean external identifiers
            if (group.getFundingSummary().isEmpty()) {
                groupIt.remove();
            } else {
                filterExternalIdentifiers(group);
            }
        }
    }
    // PeerReviews
    if (activities.getPeerReviews() != null) {
        Iterator<PeerReviewGroup> groupIt = activities.getPeerReviews().getPeerReviewGroup().iterator();
        while (groupIt.hasNext()) {
            PeerReviewGroup group = groupIt.next();
            // Filter the list of elements
            checkAndFilter(orcid, group.getPeerReviewSummary(), READ_PEER_REVIEWS_REQUIRED_SCOPE, true);
            if (group.getPeerReviewSummary().isEmpty()) {
                groupIt.remove();
            }
        }
    }
    // Works
    if (activities.getWorks() != null) {
        Iterator<WorkGroup> groupIt = activities.getWorks().getWorkGroup().iterator();
        while (groupIt.hasNext()) {
            WorkGroup group = groupIt.next();
            // Filter the list of elements
            checkAndFilter(orcid, group.getWorkSummary(), READ_WORKS_REQUIRED_SCOPE, true);
            // Clean external identifiers
            if (group.getWorkSummary().isEmpty()) {
                groupIt.remove();
            } else {
                filterExternalIdentifiers(group);
            }
        }
    }
}

Example 59 with Funding

use of org.orcid.jaxb.model.v3.dev1.record.Funding in project ORCID-Source by ORCID.

the class ProfileFundingManagerImpl method updateFunding.

/**
 * Updates a funding that belongs to the given user
 * @param orcid
 *          The user
 * @param funding
 *          The funding to update
 * @return the updated funding
 */
@Override
public Funding updateFunding(String orcid, Funding funding, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    ProfileFundingEntity pfe = profileFundingDao.getProfileFunding(orcid, funding.getPutCode());
    Visibility originalVisibility = Visibility.fromValue(pfe.getVisibility().value());
    // Save the original source
    String existingSourceId = pfe.getSourceId();
    String existingClientSourceId = pfe.getClientSourceId();
    activityValidator.validateFunding(funding, sourceEntity, false, isApiRequest, originalVisibility);
    if (!isApiRequest) {
        List<ProfileFundingEntity> existingFundings = profileFundingDao.getByUser(orcid, getLastModified(orcid));
        for (ProfileFundingEntity existingFunding : existingFundings) {
            Funding existing = jpaJaxbFundingAdapter.toFunding(existingFunding);
            if (!existing.getPutCode().equals(funding.getPutCode())) {
                activityValidator.checkFundingExternalIdentifiersForDuplicates(funding.getExternalIdentifiers(), existing.getExternalIdentifiers(), existing.getSource(), sourceEntity);
            }
        }
    }
    orcidSecurityManager.checkSource(pfe);
    jpaJaxbFundingAdapter.toProfileFundingEntity(funding, pfe);
    pfe.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(originalVisibility.value()));
    // Be sure it doesn't overwrite the source
    pfe.setSourceId(existingSourceId);
    pfe.setClientSourceId(existingClientSourceId);
    // Updates the give organization with the latest organization from database, or, create a new one
    OrgEntity updatedOrganization = orgManager.getOrgEntity(funding);
    pfe.setOrg(updatedOrganization);
    pfe = profileFundingDao.merge(pfe);
    profileFundingDao.flush();
    if (!isApiRequest) {
        notificationManager.sendAmendEmail(orcid, AmendedSection.FUNDING, createItemList(pfe));
    }
    return jpaJaxbFundingAdapter.toFunding(pfe);
}

Example 60 with Funding

use of org.orcid.jaxb.model.v3.dev1.record.Funding in project ORCID-Source by ORCID.

the class ProfileFundingManagerImpl method createFunding.

/**
 * Add a new funding to the given user
 * @param orcid
 *          The user to add the funding
 * @param funding
 *          The funding to add
 * @return the added funding
 */
@Override
@Transactional
public Funding createFunding(String orcid, Funding funding, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    activityValidator.validateFunding(funding, sourceEntity, true, isApiRequest, null);
    // Check for duplicates
    List<ProfileFundingEntity> existingFundings = profileFundingDao.getByUser(orcid, getLastModified(orcid));
    List<Funding> fundings = jpaJaxbFundingAdapter.toFunding(existingFundings);
    if (fundings != null && isApiRequest) {
        for (Funding exstingFunding : fundings) {
            activityValidator.checkFundingExternalIdentifiersForDuplicates(funding.getExternalIdentifiers(), exstingFunding.getExternalIdentifiers(), exstingFunding.getSource(), sourceEntity);
        }
    }
    ProfileFundingEntity profileFundingEntity = jpaJaxbFundingAdapter.toProfileFundingEntity(funding);
    // Updates the give organization with the latest organization from database
    OrgEntity updatedOrganization = orgManager.getOrgEntity(funding);
    profileFundingEntity.setOrg(updatedOrganization);
    // Set the source
    if (sourceEntity.getSourceProfile() != null) {
        profileFundingEntity.setSourceId(sourceEntity.getSourceProfile().getId());
    }
    if (sourceEntity.getSourceClient() != null) {
        profileFundingEntity.setClientSourceId(sourceEntity.getSourceClient().getId());
    }
    ProfileEntity profile = profileEntityCacheManager.retrieve(orcid);
    profileFundingEntity.setProfile(profile);
    setIncomingWorkPrivacy(profileFundingEntity, profile);
    DisplayIndexCalculatorHelper.setDisplayIndexOnNewEntity(profileFundingEntity, isApiRequest);
    profileFundingDao.persist(profileFundingEntity);
    profileFundingDao.flush();
    if (isApiRequest) {
        notificationManager.sendAmendEmail(orcid, AmendedSection.FUNDING, createItemList(profileFundingEntity));
    }
    return jpaJaxbFundingAdapter.toFunding(profileFundingEntity);
}