Examples with NotificationEntity org.orcid.persistence.jpa.entities.NotificationEntity used on opensource projects

Example 16 with NotificationEntity

use of org.orcid.persistence.jpa.entities.NotificationEntity in project ORCID-Source by ORCID.

the class SetUpClientsAndUsers method clearRegistry.

private boolean clearRegistry(OrcidProfile existingProfile, Map<String, String> params) {
    if (existingProfile != null) {
        String orcid = params.get(ORCID);
        String email = params.get(EMAIL);
        // exception
        if (existingProfile.getOrcidBio() == null || existingProfile.getOrcidBio().getContactDetails() == null || existingProfile.getOrcidBio().getContactDetails().retrievePrimaryEmail() == null || !email.equals(existingProfile.getOrcidBio().getContactDetails().retrievePrimaryEmail().getValue())) {
            throw new ApplicationException("User with email " + params.get(EMAIL) + " must have orcid id '" + orcid + "' but it is '" + existingProfile.getOrcidId() + "'");
        }
        // Check if the profile have the same password, if not, update the
        // password
        String encryptedPassword = encryptionManager.hashForInternalUse(params.get(PASSWORD));
        if (!encryptedPassword.equals(existingProfile.getPassword())) {
            existingProfile.setPassword(params.get(PASSWORD));
            orcidProfileManager.updatePasswordInformation(existingProfile);
        }
        // Set default names
        Name name = new Name();
        name.setCreditName(new CreditName(params.get(CREDIT_NAME)));
        name.setGivenNames(new GivenNames(params.get(GIVEN_NAMES)));
        name.setFamilyName(new FamilyName(params.get(FAMILY_NAMES)));
        name.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(OrcidVisibilityDefaults.NAMES_DEFAULT.getVisibility().value()));
        if (recordNameManager.exists(orcid)) {
            recordNameManager.updateRecordName(orcid, name);
        } else {
            recordNameManager.createRecordName(orcid, name);
        }
        profileDao.updatePreferences(orcid, true, true, true, true, org.orcid.jaxb.model.common_v2.Visibility.PUBLIC, true, 1f);
        // Set default bio
        org.orcid.jaxb.model.record_v2.Biography bio = biographyManager.getBiography(orcid);
        if (bio == null || bio.getContent() == null) {
            bio = new org.orcid.jaxb.model.record_v2.Biography(params.get(BIO));
            bio.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(OrcidVisibilityDefaults.BIOGRAPHY_DEFAULT.getVisibility().value()));
            biographyManager.createBiography(orcid, bio);
        } else {
            bio.setContent(params.get(BIO));
            bio.setVisibility(org.orcid.jaxb.model.common_v2.Visibility.fromValue(OrcidVisibilityDefaults.BIOGRAPHY_DEFAULT.getVisibility().value()));
            biographyManager.updateBiography(orcid, bio);
        }
        // Remove other names
        List<OtherNameEntity> otherNames = otherNameDao.getOtherNames(orcid, 0L);
        if (otherNames != null && !otherNames.isEmpty()) {
            for (OtherNameEntity otherName : otherNames) {
                otherNameDao.deleteOtherName(otherName);
            }
        }
        // Remove keywords
        List<ProfileKeywordEntity> keywords = profileKeywordDao.getProfileKeywords(orcid, 0L);
        if (keywords != null && !keywords.isEmpty()) {
            for (ProfileKeywordEntity keyword : keywords) {
                profileKeywordDao.deleteProfileKeyword(keyword);
            }
        }
        // Remove researcher urls
        List<ResearcherUrlEntity> rUrls = researcherUrlDao.getResearcherUrls(orcid, 0L);
        if (rUrls != null && !rUrls.isEmpty()) {
            for (ResearcherUrlEntity rUrl : rUrls) {
                researcherUrlDao.deleteResearcherUrl(orcid, rUrl.getId());
            }
        }
        // Remove external ids
        List<ExternalIdentifierEntity> extIds = externalIdentifierDao.getExternalIdentifiers(orcid, System.currentTimeMillis());
        if (extIds != null && !extIds.isEmpty()) {
            for (ExternalIdentifierEntity extId : extIds) {
                externalIdentifierDao.removeExternalIdentifier(orcid, extId.getId());
            }
        }
        // Remove addresses
        List<AddressEntity> addresses = addressDao.getAddresses(orcid, 0L);
        if (addresses != null && !addresses.isEmpty()) {
            for (AddressEntity address : addresses) {
                addressDao.deleteAddress(orcid, address.getId());
            }
        }
        // Remove emails
        List<EmailEntity> emails = emailDao.findByOrcid(orcid, profileEntityManager.getLastModified(orcid));
        if (emails != null && !emails.isEmpty()) {
            for (EmailEntity rc2Email : emails) {
                if (!params.get(EMAIL).equals(rc2Email.getId())) {
                    emailDao.removeEmail(orcid, rc2Email.getId());
                }
            }
        }
        // Remove notifications
        List<NotificationEntity> notifications = notificationDao.findByOrcid(orcid, true, 0, 10000);
        if (notifications != null && !notifications.isEmpty()) {
            for (NotificationEntity notification : notifications) {
                notificationDao.deleteNotificationItemByNotificationId(notification.getId());
                notificationDao.deleteNotificationWorkByNotificationId(notification.getId());
                notificationDao.deleteNotificationById(notification.getId());
            }
        }
        // Remove works
        List<WorkLastModifiedEntity> works = workDao.getWorkLastModifiedList(orcid);
        if (works != null && !works.isEmpty()) {
            for (WorkLastModifiedEntity work : works) {
                workDao.removeWork(orcid, work.getId());
            }
        }
        // Remove affiliations
        List<OrgAffiliationRelationEntity> affiliations = orgAffiliationRelationDao.getByUser(orcid);
        if (affiliations != null && !affiliations.isEmpty()) {
            for (OrgAffiliationRelationEntity affiliation : affiliations) {
                orgAffiliationRelationDao.remove(affiliation.getId());
            }
        }
        // Remove fundings
        List<ProfileFundingEntity> fundings = profileFundingDao.getByUser(orcid, profileEntityManager.getLastModified(orcid));
        if (fundings != null && !fundings.isEmpty()) {
            for (ProfileFundingEntity funding : fundings) {
                profileFundingDao.removeProfileFunding(orcid, funding.getId());
            }
        }
        // Remove peer reviews
        List<PeerReviewEntity> peerReviews = peerReviewDao.getByUser(orcid, profileEntityManager.getLastModified(orcid));
        if (peerReviews != null && !peerReviews.isEmpty()) {
            for (PeerReviewEntity peerReview : peerReviews) {
                peerReviewDao.removePeerReview(orcid, peerReview.getId());
            }
        }
        // Remove 3d party links
        List<OrcidOauth2TokenDetail> tokenDetails = orcidOauth2TokenDetailDao.findByUserName(orcid);
        if (tokenDetails != null && !tokenDetails.isEmpty()) {
            for (OrcidOauth2TokenDetail token : tokenDetails) {
                orcidOauth2TokenDetailDao.remove(token.getId());
            }
        }
        // Unlock just in case it is locked
        profileDao.unlockProfile(orcid);
        return true;
    }
    return false;
}

Example 17 with NotificationEntity

use of org.orcid.persistence.jpa.entities.NotificationEntity in project ORCID-Source by ORCID.

the class NotificationManagerTest method testAmendEmail.

@Test
public void testAmendEmail() throws JAXBException, IOException, URISyntaxException {
    SourceEntity sourceEntity = new SourceEntity(new ClientDetailsEntity("APP-5555555555555555"));
    when(sourceManager.retrieveSourceEntity()).thenReturn(sourceEntity);
    when(sourceManager.retrieveSourceOrcid()).thenReturn("APP-5555555555555555");
    String testOrcid = "0000-0000-0000-0003";
    for (Locale locale : Locale.values()) {
        profileEntityManager.updateLocale(testOrcid, locale);
        NotificationEntity previousNotification = notificationDao.findLatestByOrcid(testOrcid);
        long minNotificationId = previousNotification != null ? previousNotification.getId() : -1;
        notificationManager.sendAmendEmail(testOrcid, AmendedSection.UNKNOWN, null);
        // New notification entity should have been created
        NotificationEntity latestNotification = notificationDao.findLatestByOrcid(testOrcid);
        assertNotNull(latestNotification);
        assertTrue(latestNotification.getId() > minNotificationId);
        assertEquals(NotificationType.AMENDED, latestNotification.getNotificationType());
    }
}

Example 18 with NotificationEntity

use of org.orcid.persistence.jpa.entities.NotificationEntity in project ORCID-Source by ORCID.

the class NotificationManagerTest method testFindPermissionsByOrcidAndClient.

/**
 * Test independent of spring context, sets up NotificationManager with
 * mocked notifiation dao and notification adapter
 */
@Test
public void testFindPermissionsByOrcidAndClient() {
    List<Notification> notificationPermissions = IntStream.range(0, 10).mapToObj(i -> new NotificationPermission()).collect(Collectors.toList());
    NotificationDao notificationDao = mock(NotificationDaoImpl.class);
    JpaJaxbNotificationAdapter adapter = mock(JpaJaxbNotificationAdapterImpl.class);
    when(notificationDao.findPermissionsByOrcidAndClient(anyString(), anyString(), anyInt(), anyInt())).thenReturn(new ArrayList<NotificationEntity>());
    when(adapter.toNotification(Matchers.<ArrayList<NotificationEntity>>any())).thenReturn(notificationPermissions);
    NotificationManager notificationManager = new NotificationManagerImpl();
    ReflectionTestUtils.setField(notificationManager, "notificationAdapter", adapter);
    ReflectionTestUtils.setField(notificationManager, "notificationDao", notificationDao);
    NotificationPermissions notifications = notificationManager.findPermissionsByOrcidAndClient("some-orcid", "some-client", 0, OrcidApiConstants.MAX_NOTIFICATIONS_AVAILABLE);
    assertEquals(notificationPermissions.size(), notifications.getNotifications().size());
}

Example 19 with NotificationEntity

use of org.orcid.persistence.jpa.entities.NotificationEntity in project ORCID-Source by ORCID.

the class JpaJaxbNotificationAdapterTest method testToNotificationCustomEntity.

@Test
public void testToNotificationCustomEntity() {
    NotificationCustom notification = new NotificationCustom();
    notification.setNotificationType(NotificationType.CUSTOM);
    notification.setSubject("Test subject");
    NotificationEntity notificationEntity = jpaJaxbNotificationAdapter.toNotificationEntity(notification);
    assertNotNull(notificationEntity);
    assertEquals(org.orcid.jaxb.model.notification_v2.NotificationType.CUSTOM, notificationEntity.getNotificationType());
    assertEquals("Test subject", notification.getSubject());
}

Example 20 with NotificationEntity

use of org.orcid.persistence.jpa.entities.NotificationEntity in project ORCID-Source by ORCID.

the class JpaJaxbNotificationAdapterTest method testToNotificationAmendedEntity.

@Test
public void testToNotificationAmendedEntity() {
    NotificationAmended notification = new NotificationAmended();
    notification.setNotificationType(NotificationType.AMENDED);
    Source source = new Source();
    notification.setSource(source);
    SourceClientId clientId = new SourceClientId();
    source.setSourceClientId(clientId);
    clientId.setPath("APP-5555-5555-5555-5555");
    Items activities = new Items();
    notification.setItems(activities);
    Item activity = new Item();
    activities.getItems().add(activity);
    activity.setItemType(ItemType.WORK);
    activity.setItemName("Latest Research Article");
    ExternalID extId = new ExternalID();
    activity.setExternalIdentifier(extId);
    extId.setType("doi");
    extId.setValue("1234/abc123");
    NotificationEntity notificationEntity = jpaJaxbNotificationAdapter.toNotificationEntity(notification);
    assertTrue(notificationEntity instanceof NotificationAmendedEntity);
    NotificationAmendedEntity notificationAmendedEntity = (NotificationAmendedEntity) notificationEntity;
    assertNotNull(notificationEntity);
    assertEquals(org.orcid.jaxb.model.notification_v2.NotificationType.AMENDED, notificationEntity.getNotificationType());
    // Source
    assertNull(notificationAmendedEntity.getSourceId());
    assertNull(notificationAmendedEntity.getClientSourceId());
    assertNull(notificationAmendedEntity.getElementSourceId());
}