Examples with JSONObjectAdapterImpl org.sagebionetworks.schema.adapter.org.json.JSONObjectAdapterImpl used on opensource projects

Example 36 with JSONObjectAdapterImpl

use of org.sagebionetworks.schema.adapter.org.json.JSONObjectAdapterImpl in project Synapse-Repository-Services by Sage-Bionetworks.

the class Synapse method search.

public SearchResults search(SearchQuery searchQuery) throws SynapseException, UnsupportedEncodingException, JSONObjectAdapterException {
    SearchResults searchResults = null;
    String uri = "/search";
    String jsonBody = EntityFactory.createJSONStringForEntity(searchQuery);
    JSONObject obj = signAndDispatchSynapseRequest(repoEndpoint, uri, "POST", jsonBody, defaultPOSTPUTHeaders);
    if (obj != null) {
        JSONObjectAdapter adapter = new JSONObjectAdapterImpl(obj);
        searchResults = new SearchResults(adapter);
    }
    return searchResults;
}

Example 37 with JSONObjectAdapterImpl

use of org.sagebionetworks.schema.adapter.org.json.JSONObjectAdapterImpl in project Synapse-Repository-Services by Sage-Bionetworks.

the class Synapse method getEntityTypeBatch.

public BatchResults<EntityHeader> getEntityTypeBatch(List<String> entityIds) throws SynapseException {
    // TODO move UrlHelpers someplace shared so that we can UrlHelpers.ENTITY_TYPE
    String url = ENTITY_URI_PATH + "/type";
    url += "?" + ServiceConstants.BATCH_PARAM + "=" + StringUtils.join(entityIds, ServiceConstants.BATCH_PARAM_VALUE_SEPARATOR);
    JSONObject jsonObj = getEntity(url);
    JSONObjectAdapter adapter = new JSONObjectAdapterImpl(jsonObj);
    BatchResults<EntityHeader> results = new BatchResults<EntityHeader>(EntityHeader.class);
    try {
        results.initializeFromJSONObject(adapter);
        return results;
    } catch (JSONObjectAdapterException e) {
        throw new RuntimeException(e);
    }
}

Example 38 with JSONObjectAdapterImpl

use of org.sagebionetworks.schema.adapter.org.json.JSONObjectAdapterImpl in project Synapse-Repository-Services by Sage-Bionetworks.

the class Synapse method getUsersEntityPermissions.

/**
 * Get the current user's permission for a given entity.
 * @param entityId
 * @return
 * @throws SynapseException
 */
public UserEntityPermissions getUsersEntityPermissions(String entityId) throws SynapseException {
    String url = ENTITY_URI_PATH + "/" + entityId + "/permissions";
    JSONObject jsonObj = getEntity(url);
    JSONObjectAdapter adapter = new JSONObjectAdapterImpl(jsonObj);
    UserEntityPermissions uep = new UserEntityPermissions();
    try {
        uep.initializeFromJSONObject(adapter);
        return uep;
    } catch (JSONObjectAdapterException e) {
        throw new SynapseException(e);
    }
}

Example 39 with JSONObjectAdapterImpl

use of org.sagebionetworks.schema.adapter.org.json.JSONObjectAdapterImpl in project Synapse-Repository-Services by Sage-Bionetworks.

the class Synapse method getEntityPath.

/**
 * Get the hierarchical path to this entity via its id and urlPrefix
 * @param entityId
 * @param urlPrefix
 * @return
 * @throws SynapseException
 */
public EntityPath getEntityPath(String entityId) throws SynapseException {
    String url = ENTITY_URI_PATH + "/" + entityId + "/path";
    JSONObject jsonObj = getEntity(url);
    JSONObjectAdapter adapter = new JSONObjectAdapterImpl(jsonObj);
    EntityPath path = new EntityPath();
    try {
        path.initializeFromJSONObject(adapter);
        return path;
    } catch (JSONObjectAdapterException e) {
        throw new RuntimeException(e);
    }
}

Example 40 with JSONObjectAdapterImpl

use of org.sagebionetworks.schema.adapter.org.json.JSONObjectAdapterImpl in project Synapse-Repository-Services by Sage-Bionetworks.

the class Synapse method getEntityReferencedBy.

/**
 * Get the hierarchical path to this entity via its id and urlPrefix
 * @param entityId
 * @param urlPrefix
 * @return
 * @throws SynapseException
 */
public PaginatedResults<EntityHeader> getEntityReferencedBy(String entityId, String targetVersion) throws SynapseException {
    String url = ENTITY_URI_PATH + "/" + entityId;
    if (targetVersion != null) {
        url += "/version/" + targetVersion;
    }
    url += "/referencedby";
    JSONObject jsonObj = getEntity(url);
    JSONObjectAdapter adapter = new JSONObjectAdapterImpl(jsonObj);
    PaginatedResults<EntityHeader> results = new PaginatedResults<EntityHeader>(EntityHeader.class);
    try {
        results.initializeFromJSONObject(adapter);
        return results;
    } catch (JSONObjectAdapterException e) {
        throw new RuntimeException(e);
    }
}