Examples with NestedDocument org.sbolstandard.core.datatree.NestedDocument used on opensource projects

Example 16 with NestedDocument

use of org.sbolstandard.core.datatree.NestedDocument in project libSBOLj by SynBioDex.

the class SBOLWriter method formatInteractions.

/**
 * formatInteractions for Module
 * @param interactions
 * @param properties
 */
private static void formatInteractions(Set<Interaction> interactions, List<NamedProperty<QName>> properties) {
    for (Interaction i : interactions) {
        List<NamedProperty<QName>> list = new ArrayList<>();
        formatCommonIdentifiedData(list, i);
        for (URI type : i.getTypes()) {
            list.add(NamedProperty(Sbol2Terms.Interaction.type, type));
        }
        List<NestedDocument<QName>> participantList = formatParticipations(i.getParticipations());
        for (NestedDocument<QName> n : participantList) {
            list.add(NamedProperty(Sbol2Terms.Interaction.hasParticipations, n));
        }
        properties.add(NamedProperty(Sbol2Terms.ModuleDefinition.hasInteractions, NestedDocument(Sbol2Terms.Interaction.Interaction, i.getIdentity(), NamedProperties(list))));
    }
}