Examples with Range org.sbolstandard.core2.Range used on opensource projects

Example 21 with Range

use of org.sbolstandard.core2.Range in project libSBOLj by SynBioDex.

the class SequenceAnnotation method addRange.

/**
 * Creates a range with the given arguments and then adds it to this sequence annotation's
 * list of locations.
 * <p>
 * This method first creates a compliant URI for the range to be created.
 * It starts with this sequence annotation's persistent identity URI,
 * followed by the given display ID, and ends an empty string for version.
 *
 * @param displayId the display ID for the range to be created
 * @param start the start index for the range to be created
 * @param end the end index for the range to be created
 * @param orientation the orientation type
 * @return the created range
 * @throws SBOLValidationException if any of the following SBOL validation rules was violated:
 * 10201, 10202, 10204, 10206, 11102, 11103, 11104.
 */
public Range addRange(String displayId, int start, int end, OrientationType orientation) throws SBOLValidationException {
    URI identity = createCompliantURI(this.getPersistentIdentity().toString(), displayId, this.getVersion());
    Range range = new Range(identity, start, end);
    range.setPersistentIdentity(createCompliantURI(this.getPersistentIdentity().toString(), displayId, ""));
    range.setDisplayId(displayId);
    range.setVersion(this.getVersion());
    range.setOrientation(orientation);
    addLocation(range);
    return range;
}