Examples with SkipException org.testng.SkipException used on opensource projects

Example 6 with SkipException

use of org.testng.SkipException in project selenium-tests by Wikia.

the class PageObjectLogging method onTestSkipped.

@Override
public void onTestSkipped(ITestResult result) {
    if (!testStarted) {
        start(result.getMethod().getConstructorOrMethod().getMethod());
    }
    if (result.getMethod().getConstructorOrMethod().getMethod().isAnnotationPresent(DontRun.class)) {
        log("Test SKIPPED", "this test is not supported in this environment", true);
        result.setStatus(ITestResult.SUCCESS);
        onTestSuccess(result);
    } else {
        result.setStatus(ITestResult.FAILURE);
        result.setThrowable(new SkipException("TEST SKIPPED"));
        onTestFailure(result);
    }
    if (testStarted) {
        stopLogging();
    }
}

Example 7 with SkipException

use of org.testng.SkipException in project gatk by broadinstitute.

the class IntelInflaterDeflaterIntegrationTest method deflateInflateWithIntel.

@Test
public void deflateInflateWithIntel() throws DataFormatException {
    if (!isIntelInflaterDeflaterSupported()) {
        throw new SkipException("IntelInflater/IntelDeflater not available on this platform");
    }
    // create buffers and random input
    final int LEN = 64 * 1024;
    final byte[] input = new RandomDNA().nextBases(LEN);
    final byte[] compressed = new byte[2 * LEN];
    final byte[] result = new byte[LEN];
    final IntelInflaterFactory intelInflaterFactory = new IntelInflaterFactory();
    final IntelDeflaterFactory intelDeflaterFactory = new IntelDeflaterFactory();
    Assert.assertTrue(intelInflaterFactory.usingIntelInflater());
    Assert.assertTrue(intelDeflaterFactory.usingIntelDeflater());
    for (int i = 0; i < 10; i++) {
        // create deflater with compression level i
        final Deflater deflater = intelDeflaterFactory.makeDeflater(i, true);
        // setup deflater
        deflater.setInput(input);
        deflater.finish();
        // compress data
        int compressedBytes = 0;
        // so this loop should always finish in one iteration
        while (!deflater.finished()) {
            compressedBytes = deflater.deflate(compressed, 0, compressed.length);
        }
        deflater.end();
        // decompress and check output == input
        Inflater inflater = intelInflaterFactory.makeInflater(true);
        inflater.setInput(compressed, 0, compressedBytes);
        inflater.inflate(result);
        inflater.end();
        Assert.assertEquals(input, result);
        // clear compressed and result buffers for next iteration
        Arrays.fill(compressed, (byte) 0);
        Arrays.fill(result, (byte) 0);
    }
}

Example 8 with SkipException

use of org.testng.SkipException in project gatk by broadinstitute.

the class IntelInflaterDeflaterIntegrationTest method testIntelInflaterDeflaterWithPrintReads.

@Test(dataProvider = "JdkFlags")
public void testIntelInflaterDeflaterWithPrintReads(final boolean use_jdk_inflater, final boolean use_jdk_deflater) throws Exception {
    if (!isIntelInflaterDeflaterSupported()) {
        throw new SkipException("IntelInflater/IntelDeflater not available on this platform");
    }
    final File ORIG_BAM = new File(largeFileTestDir, INPUT_FILE);
    final File outFile = BaseTest.createTempFile(INPUT_FILE, ".bam");
    final ArrayList<String> args = new ArrayList<>();
    args.add("--input");
    args.add(ORIG_BAM.getAbsolutePath());
    args.add("--output");
    args.add(outFile.getAbsolutePath());
    args.add("--use_jdk_inflater");
    args.add(String.valueOf(use_jdk_inflater));
    args.add("--use_jdk_deflater");
    args.add(String.valueOf(use_jdk_deflater));
    // store current default factories, so they can be restored later
    InflaterFactory currentInflaterFactory = BlockGunzipper.getDefaultInflaterFactory();
    DeflaterFactory currentDeflaterFactory = BlockCompressedOutputStream.getDefaultDeflaterFactory();
    // set default factories to jdk version
    // because PrintReads cannot change the factory to Jdk if it was already set to Intel
    BlockGunzipper.setDefaultInflaterFactory(new InflaterFactory());
    BlockCompressedOutputStream.setDefaultDeflaterFactory(new DeflaterFactory());
    // run PrintReads
    runCommandLine(args);
    // restore default factories
    BlockGunzipper.setDefaultInflaterFactory(currentInflaterFactory);
    BlockCompressedOutputStream.setDefaultDeflaterFactory(currentDeflaterFactory);
    // validate input and output files are the same
    SamAssertionUtils.assertSamsEqual(outFile, ORIG_BAM);
}

Example 9 with SkipException

use of org.testng.SkipException in project gatk by broadinstitute.

the class AlleleListUnitTester method alleleList.

/**
     * Generate testing alleles.
     *
     * <p>
     *     Basically all are random alleles given the maximum allele length.
     * </p>
     *
     * <p>
     *     So with a low max-allele-length and high allele-count you can force repeats.
     * </p>
     *
     * @param alleleCount number of alleles to generate.
     * @param maxAlleleLength the maximum length of the allele in bases.
     * @param skipIfRepeats throw an test-skip exception {@link SkipException} if the resulting allele-list
     *                     has repeats, thus is size is less than {@code alleleCount}
     *
     * @throws RuntimeException if {@code alleleCount} is negative or {@code maxAlleleLength} is less than 1.
     * @return never {@code null}.
     */
public static AlleleList<Allele> alleleList(final int alleleCount, final int maxAlleleLength, final boolean skipIfRepeats) {
    final Allele[] alleles = AlleleListUnitTester.generateRandomUniqueAlleles(alleleCount, maxAlleleLength);
    if (alleleCount > 0)
        alleles[0] = Allele.create(alleles[0].getBases(), true);
    final AlleleList<Allele> alleleList = new IndexedAlleleList<>(alleles);
    if (skipIfRepeats && alleleList.numberOfAlleles() != alleles.length)
        throw new SkipException("repeated alleles, should be infrequent");
    return alleleList;
}