Examples with ComponentStateDefinition org.vcell.model.rbm.ComponentStateDefinition used on opensource projects

Example 31 with ComponentStateDefinition

use of org.vcell.model.rbm.ComponentStateDefinition in project vcell by virtualcell.

the class XmlReader method getRbmMolecularComponent.

private MolecularComponent getRbmMolecularComponent(Element e, Model newModel) {
    String s = e.getAttributeValue(XMLTags.NameAttrTag);
    if (s == null || s.isEmpty()) {
        System.out.println("XMLReader: getRbmMolecularComponent: name is missing.");
        return null;
    }
    MolecularComponent mc = new MolecularComponent(s);
    s = e.getAttributeValue(XMLTags.RbmIndexAttrTag);
    if (s == null || s.isEmpty()) {
        System.out.println("XMLReader: getRbmMolecularComponent: index is missing.");
        return null;
    }
    int index = Integer.parseInt(s);
    mc.setIndex(index);
    List<Element> children = e.getChildren(XMLTags.RbmMolecularTypeAllowableStateTag, vcNamespace);
    for (Element element : children) {
        ComponentStateDefinition cs = getRbmComponentStateDefinition(element, newModel);
        if (cs != null) {
            mc.addComponentStateDefinition(cs);
        }
    }
    return mc;
}