Examples with DnaRegion org.vcell.pathway.DnaRegion used on opensource projects

Example 6 with DnaRegion

use of org.vcell.pathway.DnaRegion in project vcell by virtualcell.

the class PathwayReader method addObjectDnaRegion.

private DnaRegion addObjectDnaRegion(Element element) {
    DnaRegion dnaRegion = new DnaRegion();
    addAttributes(dnaRegion, element);
    for (Object child : element.getChildren()) {
        if (child instanceof Element) {
            Element childElement = (Element) child;
            if (!addContentDnaRegion(dnaRegion, element, childElement)) {
                showUnexpected(childElement, dnaRegion);
            }
        }
    }
    pathwayModel.add(dnaRegion);
    return dnaRegion;
}