Examples with RnaRegion org.vcell.pathway.RnaRegion used on opensource projects

Example 6 with RnaRegion

use of org.vcell.pathway.RnaRegion in project vcell by virtualcell.

the class PathwayReader method addObjectRnaRegion.

private RnaRegion addObjectRnaRegion(Element element) {
    RnaRegion rnaRegion = new RnaRegion();
    addAttributes(rnaRegion, element);
    for (Object child : element.getChildren()) {
        if (child instanceof Element) {
            Element childElement = (Element) child;
            if (!addContentRnaRegion(rnaRegion, element, childElement)) {
                showUnexpected(childElement, rnaRegion);
            }
        }
    }
    pathwayModel.add(rnaRegion);
    return rnaRegion;
}