Examples with SBEntity org.vcell.pathway.sbpax.SBEntity used on opensource projects

Example 11 with SBEntity

use of org.vcell.pathway.sbpax.SBEntity in project vcell by virtualcell.

the class BioPAXUtil method getKineticLawsOfController.

// find the kinetic laws of the controls for which this physical entity is a controller
public static Set<SBEntity> getKineticLawsOfController(PhysicalEntity controller, PathwayModel pathwayModel) {
    Set<SBEntity> kineticLaws = new HashSet<SBEntity>();
    if (pathwayModel == null) {
        return kineticLaws;
    }
    Set<Control> controls = getControlsOfController(controller, pathwayModel);
    for (Control c : controls) {
        ArrayList<SBEntity> kLaws = c.getSBSubEntity();
        for (SBEntity kL : kLaws) {
            kineticLaws.add(kL);
        }
    }
    return kineticLaws;
}