Examples with PublicationRepresentation org.vcell.rest.common.PublicationRepresentation used on opensource projects

Example 6 with PublicationRepresentation

use of org.vcell.rest.common.PublicationRepresentation in project vcell by virtualcell.

the class PublicationsServerResource method getPublicationRepresentations.

private PublicationRepresentation[] getPublicationRepresentations(User vcellUser) {
    ArrayList<PublicationRepresentation> publicationRepresentations = new ArrayList<PublicationRepresentation>();
    RestDatabaseService restDatabaseService = ((VCellApiApplication) getApplication()).getRestDatabaseService();
    try {
        PublicationRep[] publicationReps = restDatabaseService.query(this, vcellUser);
        for (PublicationRep publicationRep : publicationReps) {
            PublicationRepresentation publicationRepresentation = new PublicationRepresentation(publicationRep);
            publicationRepresentations.add(publicationRepresentation);
        }
    } catch (PermissionException ee) {
        ee.printStackTrace();
        throw new ResourceException(Status.CLIENT_ERROR_UNAUTHORIZED, "not authorized");
    } catch (DataAccessException | SQLException | ExpressionException e) {
        e.printStackTrace();
        throw new RuntimeException("failed to retrieve biomodels from VCell Database : " + e.getMessage());
    }
    return publicationRepresentations.toArray(new PublicationRepresentation[0]);
}

Example 7 with PublicationRepresentation

use of org.vcell.rest.common.PublicationRepresentation in project vcell by virtualcell.

the class PublicationServerResource method getPublicationRepresentation.

private PublicationRepresentation getPublicationRepresentation(User vcellUser) {
    // if (!application.authenticate(getRequest(), getResponse())){
    // // not authenticated
    // return new SimulationTaskRepresentation[0];
    // }else{
    RestDatabaseService restDatabaseService = ((VCellApiApplication) getApplication()).getRestDatabaseService();
    try {
        PublicationRep publicationRep = restDatabaseService.query(this, vcellUser);
        PublicationRepresentation publicationRepresentation = new PublicationRepresentation(publicationRep);
        return publicationRepresentation;
    } catch (PermissionException e) {
        e.printStackTrace();
        throw new ResourceException(Status.CLIENT_ERROR_UNAUTHORIZED, "permission denied to requested resource");
    } catch (ObjectNotFoundException e) {
        e.printStackTrace();
        throw new ResourceException(Status.CLIENT_ERROR_NOT_FOUND, "publication not found");
    } catch (Exception e) {
        throw new ResourceException(Status.SERVER_ERROR_INTERNAL, e.getMessage());
    }
// }
}