Examples with EntityResolver org.xml.sax.EntityResolver used on opensource projects

Example 66 with EntityResolver

use of org.xml.sax.EntityResolver in project jbosstools-hibernate by jbosstools.

the class OpenMappingUtils method searchInEjb3MappingFiles.

/**
 * Trying to find hibernate console config ejb3 mapping file,
 * which is corresponding to provided element.
 *
 * @param consoleConfig
 * @param element
 * @return
 */
@SuppressWarnings("unchecked")
public static IFile searchInEjb3MappingFiles(ConsoleConfiguration consoleConfig, Object element) {
    IFile file = null;
    if (consoleConfig == null) {
        return file;
    }
    final ConsoleConfiguration cc2 = consoleConfig;
    List<String> documentPaths = (List<String>) consoleConfig.execute(new ExecutionContext.Command() {

        public Object execute() {
            String persistenceUnitName = cc2.getPreferences().getPersistenceUnitName();
            EntityResolver entityResolver = cc2.getConfiguration().getEntityResolver();
            IService service = cc2.getHibernateExtension().getHibernateService();
            return service.getJPAMappingFilePaths(persistenceUnitName, entityResolver);
        }
    });
    if (documentPaths == null) {
        return file;
    }
    IJavaProject[] projs = ProjectUtils.findJavaProjects(consoleConfig);
    ArrayList<IPath> pathsSrc = new ArrayList<IPath>();
    ArrayList<IPath> pathsOut = new ArrayList<IPath>();
    ArrayList<IPath> pathsFull = new ArrayList<IPath>();
    for (int i = 0; i < projs.length; i++) {
        IJavaProject proj = projs[i];
        IPath projPathFull = proj.getResource().getLocation();
        IPath projPath = proj.getPath();
        IPath projPathOut = null;
        try {
            projPathOut = proj.getOutputLocation();
            projPathOut = projPathOut.makeRelativeTo(projPath);
        } catch (JavaModelException e) {
        // just ignore
        }
        IPackageFragmentRoot[] pfrs = new IPackageFragmentRoot[0];
        try {
            pfrs = proj.getAllPackageFragmentRoots();
        } catch (JavaModelException e) {
        // just ignore
        }
        for (int j = 0; j < pfrs.length; j++) {
            // TODO: think about possibility to open resources from jar files
            if (pfrs[j].isArchive() || pfrs[j].isExternal()) {
                continue;
            }
            final IPath pathSrc = pfrs[j].getPath();
            final IPath pathOut = projPathOut;
            final IPath pathFull = projPathFull;
            pathsSrc.add(pathSrc);
            pathsOut.add(pathOut);
            pathsFull.add(pathFull);
        }
    }
    int scanSize = Math.min(pathsSrc.size(), pathsOut.size());
    scanSize = Math.min(pathsFull.size(), scanSize);
    for (int i = 0; i < scanSize && file == null; i++) {
        final IPath pathSrc = pathsSrc.get(i);
        final IPath pathOut = pathsOut.get(i);
        final IPath pathFull = pathsFull.get(i);
        Iterator<String> it = documentPaths.iterator();
        while (it.hasNext() && file == null) {
            String docPath = it.next();
            IPath path2DocFull = Path.fromOSString(docPath);
            IPath resPath = path2DocFull.makeRelativeTo(pathFull);
            if (pathOut != null) {
                resPath = resPath.makeRelativeTo(pathOut);
            }
            resPath = pathSrc.append(resPath);
            file = ResourcesPlugin.getWorkspace().getRoot().getFile(resPath);
            if (file == null || !file.exists()) {
                file = ResourcesPlugin.getWorkspace().getRoot().getFileForLocation(resPath);
            }
            if (file != null && file.exists()) {
                if (elementInFile(consoleConfig, file, element)) {
                    break;
                }
            }
            file = null;
        }
    }
    return file;
}

Example 67 with EntityResolver

use of org.xml.sax.EntityResolver in project omegat by omegat-org.

the class XHTMLFilterTest method setUp.

@Before
public final void setUp() {
    // Use custom EntityResolver to resolve DTD and entity files
    // to our locally provided files. Otherwise Java will actually
    // try to download them over the network each time, which is
    // *really* slow.
    // See http://stackoverflow.com/a/9398602
    EntityResolver er = new EntityResolver() {

        @Override
        public InputSource resolveEntity(String publicId, String systemId) throws SAXException, IOException {
            String filename = new File(systemId).getName();
            File localFile = new File("test/data/dtd", filename);
            if (localFile.exists()) {
                return new InputSource(new FileInputStream(localFile));
            }
            throw new IOException("Could not resolve: " + publicId + " / " + systemId);
        }
    };
    XMLUnit.setTestEntityResolver(er);
    XMLUnit.setControlEntityResolver(er);
}

Example 68 with EntityResolver

use of org.xml.sax.EntityResolver in project jvarkit by lindenb.

the class BlastMapAnnotations method doWork.

@Override
public int doWork(List<String> args) {
    try {
        /**
         * xml parser
         */
        DocumentBuilder docBuilder;
        /**
         * transforms XML/DOM to GBC entry
         */
        Unmarshaller unmarshaller;
        // create a DOM parser
        DocumentBuilderFactory f = DocumentBuilderFactory.newInstance();
        f.setCoalescing(true);
        // f.setNamespaceAware(true); no, why does it break the parsing of uniprot ??
        f.setValidating(false);
        f.setExpandEntityReferences(true);
        docBuilder = f.newDocumentBuilder();
        docBuilder.setEntityResolver(new EntityResolver() {

            @Override
            public InputSource resolveEntity(String publicId, String systemId) throws SAXException, IOException {
                return new InputSource(new StringReader(""));
            }
        });
        // create a Unmarshaller for NCBI
        JAXBContext jc = JAXBContext.newInstance("gov.nih.nlm.ncbi.gb:gov.nih.nlm.ncbi.blast:org.uniprot");
        unmarshaller = jc.createUnmarshaller();
        LOG.info("reading entry " + IN);
        Document domEntry = docBuilder.parse(IN);
        GBSet gbSet = null;
        Uniprot uniprotSet = null;
        if ("GBSet".equals(domEntry.getDocumentElement().getNodeName())) {
            LOG.info("parsing as GBSet");
            gbSet = unmarshaller.unmarshal(domEntry, GBSet.class).getValue();
        } else if ("uniprot".equals(domEntry.getDocumentElement().getNodeName())) {
            LOG.info("parsing as Uniprot " + domEntry.getDocumentElement());
            uniprotSet = unmarshaller.unmarshal(domEntry, Uniprot.class).getValue();
        // LOG.info(uniprotSet.getEntry().size());
        // jc.createMarshaller().marshal(uniprotSet, System.err);
        } else {
            LOG.info("unknown root element:" + domEntry.getDocumentElement().getNodeName());
            return -1;
        }
        Document blastDom;
        if (args.size() == 1) {
            LOG.info("reading " + args.get(0));
            blastDom = docBuilder.parse(new File(args.get(0)));
        } else if (args.isEmpty()) {
            LOG.info("reading from stdin");
            blastDom = docBuilder.parse(stdin());
        } else {
            LOG.error("Illegal number of args");
            return -1;
        }
        this.blastOutput = unmarshaller.unmarshal(blastDom, BlastOutput.class).getValue();
        if (uniprotSet != null)
            printUniprot(uniprotSet);
        if (gbSet != null)
            printGB(gbSet);
        return 0;
    } catch (Exception err) {
        LOG.error(err);
        return -1;
    }
}

Example 69 with EntityResolver

use of org.xml.sax.EntityResolver in project cobar by alibaba.

the class ConfigUtil method getDocument.

public static Document getDocument(final InputStream dtd, InputStream xml) throws ParserConfigurationException, SAXException, IOException {
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    factory.setValidating(true);
    factory.setNamespaceAware(false);
    DocumentBuilder builder = factory.newDocumentBuilder();
    builder.setEntityResolver(new EntityResolver() {

        @Override
        public InputSource resolveEntity(String publicId, String systemId) {
            return new InputSource(dtd);
        }
    });
    builder.setErrorHandler(new ErrorHandler() {

        @Override
        public void warning(SAXParseException e) {
        }

        @Override
        public void error(SAXParseException e) throws SAXException {
            throw e;
        }

        @Override
        public void fatalError(SAXParseException e) throws SAXException {
            throw e;
        }
    });
    return builder.parse(xml);
}

Example 70 with EntityResolver

use of org.xml.sax.EntityResolver in project musiccabinet by hakko.

the class AbstractSAXParserImpl method getSAXParser.

/*
	 * From http://docs.oracle.com/javase/1.4.2/docs/api/javax/xml/parsers/SAXParserFactory.html
	 * 
	 * An implementation of the SAXParserFactory class is NOT guaranteed to be thread safe.
	 * It is up to the user application to make sure about the use of the SAXParserFactory
	 * from more than one thread. Alternatively the application can have one instance of the
	 * SAXParserFactory per thread. An application can use the same instance of the factory
	 * to obtain one or more instances of the SAXParser provided the instance of the factory
	 * isn't being used in more than one thread at a time. 
	 * 
	 * TODO : woodstox parserfactory synchronization?
	 */
protected synchronized SAXParser getSAXParser() throws ParserConfigurationException, SAXException {
    SAXParser saxParser = parserFactory.newSAXParser();
    saxParser.getXMLReader().setEntityResolver(new EntityResolver() {

        @Override
        public InputSource resolveEntity(String arg0, String arg1) throws SAXException, IOException {
            return null;
        }
    });
    return saxParser;
}