Examples with SegmentationItem sc.fiji.labkit.ui.models.SegmentationItem used on opensource projects

Example 6 with SegmentationItem

use of sc.fiji.labkit.ui.models.SegmentationItem in project labkit-ui by juglab.

the class LabkitProjectFrame method updateSegmenterFiles.

private static void updateSegmenterFiles(LabkitProjectModel projectModel, SegmenterListModel segmenterListModel) throws IOException {
    File segmentersDirectory = new File(projectModel.getProjectDirectory(), "segmenters");
    if (!segmentersDirectory.isDirectory())
        Files.createDirectory(segmentersDirectory.toPath());
    List<String> files = new ArrayList<>();
    for (SegmentationItem segmentationItem : segmenterListModel.segmenters().get()) {
        if (!segmentationItem.isTrained())
            continue;
        String result = saveSegmenter(segmentationItem, segmentersDirectory);
        files.add(result);
    }
    List<String> oldFiles = projectModel.segmenterFiles();
    removeObsoleteFiles(files, oldFiles);
    projectModel.segmenterFiles().clear();
    projectModel.segmenterFiles().addAll(files);
}

Example 7 with SegmentationItem

use of sc.fiji.labkit.ui.models.SegmentationItem in project labkit-ui by juglab.

the class ProjectSegmentationModel method initSegmenterListModel.

private SegmenterListModel initSegmenterListModel(List<String> segmenters) {
    SegmenterListModel segmenterListModel = new SegmenterListModel(context, new ExtensionPoints());
    segmenterListModel.trainingData().set(new TrainingData());
    for (String filename : segmenters) {
        SegmentationItem segmentationItem = segmenterListModel.addSegmenter(PixelClassificationPlugin.create());
        segmentationItem.openModel(filename);
    }
    return segmenterListModel;
}

Example 8 with SegmentationItem

use of sc.fiji.labkit.ui.models.SegmentationItem in project labkit-ui by juglab.

the class SegmentationComponent method initActions.

private void initActions() {
    final Holder<SegmentationItem> selectedSegmenter = segmentationModel.segmenterList().selectedSegmenter();
    final ImageLabelingModel labelingModel = segmentationModel.imageLabelingModel();
    new TrainClassifier(extensible, segmentationModel.segmenterList());
    new ClassifierSettingsAction(extensible, segmentationModel.segmenterList());
    new ClassifierIoAction(extensible, segmentationModel.segmenterList());
    new LabelingIoAction(extensible, labelingModel);
    new AddLabelingIoAction(extensible, labelingModel.labeling());
    new SegmentationExportAction(extensible, labelingModel);
    new ResetViewAction(extensible, labelingModel);
    new BatchSegmentAction(extensible, selectedSegmenter);
    new SegmentationAsLabelAction(extensible, segmentationModel);
    new BitmapImportExportAction(extensible, labelingModel);
    new LabelEditAction(extensible, unmodifiableLabels, new ColoredLabelsModel(labelingModel));
    MeasureConnectedComponents.addAction(extensible, labelingModel);
    new ShowHelpAction(extensible);
    labelingComponent.addShortcuts(extensible.getShortCuts());
}