Examples with CoexpressionAnalysis ubic.gemma.model.analysis.expression.coexpression.CoexpressionAnalysis used on opensource projects

Example 11 with CoexpressionAnalysis

use of ubic.gemma.model.analysis.expression.coexpression.CoexpressionAnalysis in project Gemma by PavlidisLab.

the class PersistentDummyObjectHelper method addTestAnalyses.

public void addTestAnalyses(ExpressionExperiment ee) {
    /*
         * Add analyses
         */
    CoexpressionAnalysis pca = CoexpressionAnalysis.Factory.newInstance();
    pca.setName(RandomStringUtils.randomNumeric(PersistentDummyObjectHelper.RANDOM_STRING_LENGTH));
    pca.setExperimentAnalyzed(ee);
    persisterHelper.persist(pca);
    /*
         * Diff
         */
    DifferentialExpressionAnalysis expressionAnalysis = DifferentialExpressionAnalysis.Factory.newInstance();
    Protocol protocol = Protocol.Factory.newInstance();
    protocol.setName("Differential expression analysis settings");
    protocol.setDescription("qvalue: " + true);
    expressionAnalysis.setProtocol(protocol);
    expressionAnalysis.setExperimentAnalyzed(ee);
    persisterHelper.persist(expressionAnalysis);
}