Examples with BioSequence2GeneProduct ubic.gemma.model.association.BioSequence2GeneProduct used on opensource projects

Example 11 with BioSequence2GeneProduct

use of ubic.gemma.model.association.BioSequence2GeneProduct in project Gemma by PavlidisLab.

the class PersistentDummyObjectHelper method getTestPersistentBioSequence2GeneProducts.

/**
 * @param bioSequence bio sequence
 * @return bio sequence to gene products
 */
public Collection<BioSequence2GeneProduct> getTestPersistentBioSequence2GeneProducts(BioSequence bioSequence) {
    Collection<BioSequence2GeneProduct> b2gCol = new HashSet<>();
    BlatAssociation b2g = BlatAssociation.Factory.newInstance();
    b2g.setScore(new Random().nextDouble());
    b2g.setBioSequence(bioSequence);
    b2g.setGeneProduct(this.getTestPersistentGeneProduct(this.getTestPersistentGene()));
    b2g.setBlatResult(this.getTestPersistentBlatResult(bioSequence, null));
    b2gCol.add(b2g);
    // noinspection unchecked
    return (Collection<BioSequence2GeneProduct>) persisterHelper.persist(b2gCol);
}