Examples with NumberKeyListener uk.ac.babraham.SeqMonk.Utilities.NumberKeyListener used on opensource projects

Example 11 with NumberKeyListener

use of uk.ac.babraham.SeqMonk.Utilities.NumberKeyListener in project SeqMonk by s-andrews.

the class FixedValueQuantitation method getOptionsPanel.

/* (non-Javadoc)
	 * @see uk.ac.babraham.SeqMonk.Quantitation.Quantitation#getOptionsPanel(uk.ac.babraham.SeqMonk.SeqMonkApplication)
	 */
public JPanel getOptionsPanel() {
    if (optionPanel != null) {
        // We've done this already
        return optionPanel;
    }
    optionPanel = new JPanel();
    optionPanel.setLayout(new GridBagLayout());
    GridBagConstraints gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = 1;
    gbc.weightx = 0.5;
    gbc.weighty = 0.1;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    optionPanel.add(new JLabel("Value to assign"), gbc);
    gbc.gridx = 2;
    valueToAssignField = new JTextField("1", 5);
    valueToAssignField.addKeyListener(new NumberKeyListener(true, true));
    optionPanel.add(valueToAssignField, gbc);
    return optionPanel;
}

Example 12 with NumberKeyListener

use of uk.ac.babraham.SeqMonk.Utilities.NumberKeyListener in project SeqMonk by s-andrews.

the class ChromosomeViewReport method getOptionsPanel.

/* (non-Javadoc)
	 * @see uk.ac.babraham.SeqMonk.Reports.Report#getOptionsPanel()
	 */
public JPanel getOptionsPanel() {
    if (optionsPanel != null)
        return optionsPanel;
    optionsPanel = new JPanel();
    optionsPanel.setLayout(new BorderLayout());
    JPanel choicePanel = new JPanel();
    choicePanel.setLayout(new BoxLayout(choicePanel, BoxLayout.Y_AXIS));
    JPanel choicePanel1 = new JPanel();
    choicePanel1.add(new JLabel("Upstream context "));
    upstreamContextField = new JTextField("", 10);
    upstreamContextField.addKeyListener(new NumberKeyListener(false, true));
    choicePanel1.add(upstreamContextField);
    choicePanel.add(choicePanel1);
    JPanel choicePanel2 = new JPanel();
    choicePanel2.add(new JLabel("Downstream context "));
    downstreamContextField = new JTextField("", 10);
    downstreamContextField.addKeyListener(new NumberKeyListener(false, true));
    choicePanel2.add(downstreamContextField);
    choicePanel.add(choicePanel2);
    optionsPanel.add(choicePanel, BorderLayout.CENTER);
    return optionsPanel;
}

Example 13 with NumberKeyListener

use of uk.ac.babraham.SeqMonk.Utilities.NumberKeyListener in project SeqMonk by s-andrews.

the class SmoothingQuantitation method getOptionsPanel.

/* (non-Javadoc)
	 * @see uk.ac.babraham.SeqMonk.Quantitation.Quantitation#getOptionsPanel(uk.ac.babraham.SeqMonk.SeqMonkApplication)
	 */
public JPanel getOptionsPanel() {
    if (optionPanel != null) {
        // We've done this already
        return optionPanel;
    }
    optionPanel = new JPanel();
    optionPanel.setLayout(new GridBagLayout());
    GridBagConstraints gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = 1;
    gbc.weightx = 0.5;
    gbc.weighty = 0.1;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    optionPanel.add(new JLabel("Smoothing method"), gbc);
    gbc.gridx = 2;
    correctionActions = new JComboBox(new String[] { "Adjacent Probes", "Window Size" });
    optionPanel.add(correctionActions, gbc);
    gbc.gridx = 1;
    gbc.gridy++;
    optionPanel.add(new JLabel("Size"), gbc);
    distanceField = new JTextField("" + distance);
    distanceField.addKeyListener(new NumberKeyListener(false, false));
    distanceField.addKeyListener(new KeyListener() {

        public void keyTyped(KeyEvent arg0) {
        }

        public void keyReleased(KeyEvent arg0) {
            optionsChanged();
        }

        public void keyPressed(KeyEvent arg0) {
        }
    });
    gbc.gridx++;
    optionPanel.add(distanceField, gbc);
    return optionPanel;
}

Example 14 with NumberKeyListener

use of uk.ac.babraham.SeqMonk.Utilities.NumberKeyListener in project SeqMonk by s-andrews.

the class MacsPeakCaller method getOptionsPanel.

public JPanel getOptionsPanel() {
    if (optionPanel != null) {
        // We've done this already
        return optionPanel;
    }
    optionPanel = new JPanel();
    optionPanel.setLayout(new GridBagLayout());
    GridBagConstraints gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = 1;
    gbc.weightx = 0.5;
    gbc.weighty = 0.1;
    gbc.fill = GridBagConstraints.BOTH;
    optionPanel.add(new JLabel("ChIP Stores to use"), gbc);
    gbc.gridy++;
    gbc.weighty = 0.5;
    DataStore[] stores = collection.getAllDataStores();
    chipStoresList = new JList(stores);
    chipStoresList.getSelectionModel().addListSelectionListener(this);
    chipStoresList.setCellRenderer(new TypeColourRenderer());
    optionPanel.add(new JScrollPane(chipStoresList), gbc);
    gbc.gridy++;
    gbc.weighty = 0.1;
    optionPanel.add(new JLabel("Input Stores to use"), gbc);
    gbc.gridy++;
    gbc.weighty = 0.5;
    inputStoresList = new JList(stores);
    inputStoresList.getSelectionModel().addListSelectionListener(this);
    inputStoresList.setCellRenderer(new TypeColourRenderer());
    optionPanel.add(new JScrollPane(inputStoresList), gbc);
    gbc.gridy++;
    JPanel bottomPanel = new JPanel();
    bottomPanel.setLayout(new GridBagLayout());
    GridBagConstraints bgbc = new GridBagConstraints();
    bgbc.gridx = 0;
    bgbc.gridy = 0;
    bgbc.weightx = 0.5;
    bgbc.weighty = 0.5;
    bgbc.fill = GridBagConstraints.HORIZONTAL;
    bottomPanel.add(new JLabel("P-value cutoff "), bgbc);
    pValueField = new JTextField("" + pValue);
    pValueField.addKeyListener(new NumberKeyListener(true, false, 1));
    bgbc.gridx = 1;
    bottomPanel.add(pValueField, bgbc);
    bgbc.gridx = 0;
    bgbc.gridy++;
    bottomPanel.add(new JLabel("Sonicated fragment size "), bgbc);
    fragmentSizeField = new JTextField("300");
    fragmentSizeField.addKeyListener(new NumberKeyListener(false, false));
    bgbc.gridx = 1;
    bottomPanel.add(fragmentSizeField, bgbc);
    bgbc.gridx = 0;
    bgbc.gridy++;
    bottomPanel.add(new JLabel("Skip deduplication step "), bgbc);
    skipDeduplicationBox = new JCheckBox();
    bgbc.gridx = 1;
    bottomPanel.add(skipDeduplicationBox, bgbc);
    optionPanel.add(bottomPanel, gbc);
    return optionPanel;
}

Example 15 with NumberKeyListener

use of uk.ac.babraham.SeqMonk.Utilities.NumberKeyListener in project SeqMonk by s-andrews.

the class ReadPositionProbeGenerator method getOptionsPanel.

/* (non-Javadoc)
	 * @see uk.ac.babraham.SeqMonk.ProbeGenerators.ProbeGenerator#getOptionsPanel(uk.ac.babraham.SeqMonk.SeqMonkApplication)
	 */
public JPanel getOptionsPanel() {
    if (optionPanel != null) {
        // We've done this already
        return optionPanel;
    }
    optionPanel = new JPanel();
    optionPanel.setLayout(new GridBagLayout());
    GridBagConstraints gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = 1;
    gbc.weightx = 0.5;
    gbc.weighty = 0.1;
    gbc.fill = GridBagConstraints.BOTH;
    optionPanel.add(new JLabel("Stores to use"), gbc);
    gbc.gridy++;
    gbc.weighty = 0.9;
    DataStore[] stores = collection.getAllDataStores();
    storesList = new JList(stores);
    storesList.getSelectionModel().addListSelectionListener(this);
    storesList.setCellRenderer(new TypeColourRenderer());
    optionPanel.add(new JScrollPane(storesList), gbc);
    gbc.gridy++;
    JPanel bottomPanel = new JPanel();
    bottomPanel.setLayout(new GridBagLayout());
    GridBagConstraints bgbc = new GridBagConstraints();
    bgbc.gridx = 0;
    bgbc.gridy = 0;
    bgbc.weightx = 0.5;
    bgbc.weighty = 0.5;
    bgbc.fill = GridBagConstraints.HORIZONTAL;
    bottomPanel.add(new JLabel("Use reads on strand "), bgbc);
    readStrandTypeBox = new JComboBox(ReadStrandType.getTypeOptions());
    bgbc.gridx = 1;
    bottomPanel.add(readStrandTypeBox, bgbc);
    bgbc.gridx = 0;
    bgbc.gridy++;
    bottomPanel.add(new JLabel("Minimum read count per position"), bgbc);
    bgbc.gridx = 1;
    minCountField = new JTextField("" + minCount, 4);
    minCountField.addKeyListener(this);
    bottomPanel.add(minCountField, bgbc);
    bgbc.gridx = 0;
    bgbc.gridy++;
    bottomPanel.add(new JLabel("Valid positions per window"), bgbc);
    bgbc.gridx = 1;
    readsPerWindowField = new JTextField("" + readsPerWindow, 4);
    readsPerWindowField.addKeyListener(new NumberKeyListener(false, false));
    readsPerWindowField.addKeyListener(this);
    bottomPanel.add(readsPerWindowField, bgbc);
    bgbc.gridx = 0;
    bgbc.gridy++;
    bottomPanel.add(new JLabel("Limit to region"), bgbc);
    bgbc.gridx = 1;
    JPanel limitPanel = new JPanel();
    limitPanel.setLayout(new BorderLayout());
    designWithinExistingBox = new JCheckBox();
    limitPanel.add(designWithinExistingBox, BorderLayout.WEST);
    if (collection.probeSet() == null) {
        limitRegionBox = new JComboBox(new String[] { "Currently Visible Region" });
    } else {
        limitRegionBox = new JComboBox(new String[] { "Active Probe List", "Currently Visible Region" });
    }
    limitRegionBox.setEnabled(false);
    designWithinExistingBox.addActionListener(new ActionListener() {

        public void actionPerformed(ActionEvent arg0) {
            limitRegionBox.setEnabled(designWithinExistingBox.isSelected());
            isReady();
        }
    });
    limitPanel.add(limitRegionBox, BorderLayout.CENTER);
    bottomPanel.add(limitPanel, bgbc);
    optionPanel.add(bottomPanel, gbc);
    bgbc.gridx = 0;
    bgbc.gridy++;
    bottomPanel.add(new JLabel("Ignore Strand "), bgbc);
    bgbc.gridx = 1;
    ignoreStrandBox = new JCheckBox();
    ignoreStrandBox.setSelected(true);
    bottomPanel.add(ignoreStrandBox, bgbc);
    optionPanel.add(bottomPanel, gbc);
    return optionPanel;
}