Examples with MultiDialog uk.ac.sussex.gdsc.core.ij.gui.MultiDialog used on opensource projects

Example 6 with MultiDialog

use of uk.ac.sussex.gdsc.core.ij.gui.MultiDialog in project GDSC-SMLM by aherbert.

the class ConfigurationTemplate method loadSelectedStandardTemplates.

/**
 * Load selected standard templates.
 *
 * @param settings the settings
 */
private static void loadSelectedStandardTemplates(ConfigurationTemplateSettings.Builder settings) {
    final String[] inlineNames = listInlineTemplates();
    final TemplateResource[] templateResources = listTemplateResources();
    if (templateResources.length + inlineNames.length == 0) {
        return;
    }
    final List<String> items = new LocalList<>();
    Arrays.stream(inlineNames).forEach(items::add);
    Arrays.stream(templateResources).forEach(t -> items.add(t.name));
    final MultiDialog md = new MultiDialog("Select templates", items);
    md.setSelected(settings.getSelectedStandardTemplatesList());
    md.setHelpUrl(HelpUrls.getUrl("template-manager-load-standard"));
    md.showDialog();
    if (md.wasCancelled()) {
        return;
    }
    final List<String> selected = md.getSelectedResults();
    if (selected.isEmpty()) {
        return;
    }
    // Save
    settings.clearSelectedStandardTemplates();
    settings.addAllSelectedStandardTemplates(selected);
    int count = templates.size();
    // Keep a hash of those not loaded from inline resources
    final HashSet<String> remaining = new HashSet<>(selected.size());
    for (int i = 0; i < selected.size(); i++) {
        final String name = selected.get(i);
        // Try and get the template from inline resources
        final Template t = inlineTemplates.get(name);
        if (t != null) {
            templates.put(name, t);
        } else {
            remaining.add(name);
        }
    }
    if (!remaining.isEmpty()) {
        // Build a list of resources to load
        final LocalList<TemplateResource> list = new LocalList<>(remaining.size());
        for (final TemplateResource t : templateResources) {
            if (remaining.contains(t.name)) {
                list.add(t);
            }
        }
        loadTemplateResources(list.toArray(new TemplateResource[0]));
    }
    count = templates.size() - count;
    if (count > 0) {
        saveLoadedTemplates(templates);
        IJ.showMessage(TITLE, "Loaded " + TextUtils.pleural(count, "new standard template"));
    }
}

Example 7 with MultiDialog

use of uk.ac.sussex.gdsc.core.ij.gui.MultiDialog in project GDSC-SMLM by aherbert.

the class ConfigurationTemplate method removeLoadedTemplates.

private void removeLoadedTemplates() {
    if (templates.isEmpty()) {
        IJ.error(title, "No templates are currently loaded");
        return;
    }
    final MultiDialog md = new MultiDialog("Select templates to remove", getTemplateNamesAsList());
    md.setHelpUrl(HelpUrls.getUrl("template-manager-remove"));
    md.showDialog();
    if (md.wasCancelled()) {
        return;
    }
    final List<String> selected = md.getSelectedResults();
    if (selected.isEmpty()) {
        // Nothing to do
        return;
    }
    if (selected.size() == templates.size()) {
        clearTemplates();
    } else {
        for (final String name : selected) {
            templates.remove(name);
        }
    }
    saveLoadedTemplates(templates);
}

Example 8 with MultiDialog

use of uk.ac.sussex.gdsc.core.ij.gui.MultiDialog in project GDSC-SMLM by aherbert.

the class TraceDiffusion method showMultiDialog.

private boolean showMultiDialog(ArrayList<MemoryPeakResults> allResults) {
    multiMode = true;
    // Show a list box containing all the results. This should remember the last set of chosen
    // items.
    final MultiDialog md = ResultsManager.createMultiDialog(TITLE);
    md.setSelected(selectedRef.get());
    md.setHelpUrl(HelpUrls.getUrl("trace-diffusion-multi"));
    md.showDialog();
    if (md.wasCancelled()) {
        return false;
    }
    final List<String> selected = md.getSelectedResults();
    if (selected.isEmpty()) {
        IJ.error(TITLE, "No results were selected");
        return false;
    }
    selectedRef.set(selected);
    for (final String name : selected) {
        final MemoryPeakResults r = MemoryPeakResults.getResults(name);
        if (r != null) {
            allResults.add(r);
        }
    }
    if (allResults.isEmpty()) {
        return false;
    }
    // Check calibration exists for the first set of results
    if (!checkCalibration(allResults.get(0))) {
        return false;
    }
    // Check the calibration is the same for the rest
    final CalibrationReader cal = allResults.get(0).getCalibrationReader();
    final double nmPerPixel = cal.getNmPerPixel();
    final double exposureTime = cal.getExposureTime();
    final DistanceUnit distanceUnit = cal.getDistanceUnit();
    for (int i = 1; i < allResults.size(); i++) {
        final MemoryPeakResults results = allResults.get(i);
        if (!results.hasCalibration() || results.getCalibrationReader().getExposureTime() != exposureTime || results.getNmPerPixel() != nmPerPixel || results.getDistanceUnit() != distanceUnit) {
            IJ.error(TITLE, "The exposure time, pixel pitch and distance unit must match across all the results");
            return false;
        }
    }
    return true;
}

Example 9 with MultiDialog

use of uk.ac.sussex.gdsc.core.ij.gui.MultiDialog in project GDSC-SMLM by aherbert.

the class TraceExporter method showMultiDialog.

private static boolean showMultiDialog(ArrayList<MemoryPeakResults> allResults, MemoryResultsList items) {
    // Show a list box containing all the results. This should remember the last set of chosen
    // items.
    final MultiDialog md = new MultiDialog(TITLE, items);
    md.setDisplayConverter(items.getDisplayConverter());
    md.setSelected(selectedRef.get());
    md.showDialog();
    if (md.wasCancelled()) {
        return false;
    }
    final List<String> selected = md.getSelectedResults();
    if (selected.isEmpty()) {
        IJ.error(TITLE, "No results were selected");
        return false;
    }
    selectedRef.set(selected);
    for (final String name : selected) {
        final MemoryPeakResults r = MemoryPeakResults.getResults(name);
        if (r != null) {
            allResults.add(r);
        }
    }
    return !allResults.isEmpty();
}

Example 10 with MultiDialog

use of uk.ac.sussex.gdsc.core.ij.gui.MultiDialog in project GDSC-SMLM by aherbert.

the class ResultsManager method batchSave.

/**
 * Batch save a set of results files.
 */
private void batchSave() {
    if (MemoryPeakResults.isMemoryEmpty()) {
        IJ.error(TITLE, "No localisations in memory");
        return;
    }
    final MultiDialog md = createMultiDialog(TITLE);
    md.setSelected(lastSelected.get());
    md.setHelpUrl(HelpUrls.getUrl("batch-save-results"));
    md.showDialog();
    if (md.wasCancelled()) {
        return;
    }
    final List<String> selected = md.getSelectedResults();
    if (selected.isEmpty()) {
        return;
    }
    lastSelected.set(selected);
    resultsSettings = SettingsManager.readResultsSettings(0).toBuilder();
    final ExtendedGenericDialog gd = new ExtendedGenericDialog(TITLE);
    addFileResultsOptions(gd, resultsSettings, FLAG_RESULTS_DIRECTORY | FLAG_NO_SECTION_HEADER);
    gd.addHelp(HelpUrls.getUrl("batch-save-results"));
    gd.showDialog();
    if (gd.wasCanceled()) {
        return;
    }
    gd.collectOptions();
    final ResultsFileSettings.Builder b = resultsSettings.getResultsFileSettingsBuilder();
    final String dir = gd.getNextString();
    b.setFileFormatValue(gd.getNextChoiceIndex());
    b.setResultsDirectory(dir);
    SettingsManager.writeSettings(resultsSettings);
    if (!new File(dir).exists()) {
        IJ.error(TITLE, "Output directory does not exist");
        return;
    }
    final ResultsFileSettings resultsFileSettings = resultsSettings.getResultsFileSettings();
    if (resultsFileSettings.getFileFormatValue() <= 0) {
        IJ.error(TITLE, "No output file format");
        return;
    }
    int count = 0;
    for (final String name : selected) {
        final MemoryPeakResults r = MemoryPeakResults.getResults(name);
        if (r != null && save(resultsFileSettings, r)) {
            count++;
        }
    }
    IJ.showStatus("Saved " + TextUtils.pleural(count, "dataset"));
}