Examples with AstigmatismModelSettings uk.ac.sussex.gdsc.smlm.data.config.PSFProtos.AstigmatismModelSettings used on opensource projects

Example 6 with AstigmatismModelSettings

use of uk.ac.sussex.gdsc.smlm.data.config.PSFProtos.AstigmatismModelSettings in project GDSC-SMLM by aherbert.

the class AstigmatismModelManager method invertModel.

private void invertModel() {
    final GenericDialog gd = new GenericDialog(TITLE);
    final String[] models = listAstigmatismModels(false);
    gd.addMessage("Invert the z-orientation of a model.\n \n" + TextUtils.wrap("Note that a positive gamma puts the focal plane for the X-dimension " + "above the z-centre (positive Z) and the focal " + "plane for the Y-dimension below the z-centre (negative Z). If gamma " + "is negative then the orientation of the focal planes of X and Y are reversed.", 80));
    gd.addChoice("Model", models, pluginSettings.getSelected());
    gd.addHelp(HelpUrls.getUrl("astigmatism-model-manager-invert"));
    gd.showDialog();
    if (gd.wasCanceled()) {
        return;
    }
    final String name = gd.getNextChoice();
    pluginSettings.setSelected(name);
    final AstigmatismModelSettings settings = AstigmatismModelSettingsHolder.getSettings();
    final AstigmatismModel model = settings.getAstigmatismModelResourcesMap().get(name);
    if (model == null) {
        IJ.error(TITLE, "Failed to find astigmatism model: " + name);
        return;
    }
    final AstigmatismModel.Builder builder = model.toBuilder();
    // Invert the gamma
    builder.setGamma(-model.getGamma());
    // Invert the constants of z^3 as these have an asymmetric effect on the curve
    builder.setAx(-model.getAx());
    builder.setAy(-model.getAy());
    // The constants of z^4 have a symmetric effect on the curve
    // builder.setBx(-model.getBx());
    // builder.setBy(-model.getBy());
    AstigmatismModelSettingsHolder.setSettings(settings.toBuilder().putAstigmatismModelResources(name, builder.build()).build());
    ImageJUtils.log("Inverted astigmatism model: %s", name);
}