Examples with FluorophoreSequenceModel uk.ac.sussex.gdsc.smlm.model.FluorophoreSequenceModel used on opensource projects

Example 6 with FluorophoreSequenceModel

use of uk.ac.sussex.gdsc.smlm.model.FluorophoreSequenceModel in project GDSC-SMLM by aherbert.

the class CreateData method removeFilteredFluorophores.

/**
 * Remove all fluorophores which were not drawn.
 *
 * @param fluorophores the fluorophores
 * @param localisations the localisations
 * @return the filtered list
 */
private List<? extends FluorophoreSequenceModel> removeFilteredFluorophores(List<? extends FluorophoreSequenceModel> fluorophores, List<LocalisationModel> localisations) {
    if (fluorophores == null) {
        return null;
    }
    // movingMolecules will be created with an initial capacity to hold all the unique IDs
    final TIntHashSet idSet = new TIntHashSet((movingMolecules != null) ? movingMolecules.capacity() : 0);
    for (final LocalisationModel l : localisations) {
        idSet.add(l.getId());
    }
    final List<FluorophoreSequenceModel> newFluorophores = new ArrayList<>(idSet.size());
    for (final FluorophoreSequenceModel f : fluorophores) {
        if (idSet.contains(f.getId())) {
            newFluorophores.add(f);
        }
    }
    return newFluorophores;
}