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Example 26 with Properties

use of uk.gov.gchq.gaffer.data.element.Properties in project Gaffer by gchq.

the class AccumuloKeyValueReducer method reduceMultiValue.

private Value reduceMultiValue(final Key key, final Iterator<Value> iter, final Value firstValue) {
    final String group;
    try {
        group = new String(key.getColumnFamilyData().getBackingArray(), CommonConstants.UTF_8);
    } catch (final UnsupportedEncodingException e) {
        throw new RuntimeException(e.getMessage(), e);
    }
    ElementAggregator aggregator;
    Properties firstPropertySet;
    try {
        firstPropertySet = elementConverter.getPropertiesFromValue(group, firstValue);
        aggregator = schema.getElement(group).getAggregator();
        aggregator.aggregate(firstPropertySet);
        while (iter.hasNext()) {
            aggregator.aggregate(elementConverter.getPropertiesFromValue(group, iter.next()));
        }
    } catch (final AccumuloElementConversionException e) {
        throw new IllegalArgumentException("Failed to get Properties from an accumulo value", e);
    }
    final Properties properties = new Properties();
    aggregator.state(properties);
    try {
        return elementConverter.getValueFromProperties(group, properties);
    } catch (final AccumuloElementConversionException e) {
        throw new IllegalArgumentException("Failed to get Properties from an accumulo value", e);
    }
}
Also used : UnsupportedEncodingException(java.io.UnsupportedEncodingException) Properties(uk.gov.gchq.gaffer.data.element.Properties) ElementAggregator(uk.gov.gchq.gaffer.data.element.function.ElementAggregator) AccumuloElementConversionException(uk.gov.gchq.gaffer.accumulostore.key.exception.AccumuloElementConversionException)

Example 27 with Properties

use of uk.gov.gchq.gaffer.data.element.Properties in project Gaffer by gchq.

the class AbstractAccumuloElementConverterTest method shouldBuildTimestampFromDefaultTime.

@Test
public void shouldBuildTimestampFromDefaultTime() throws AccumuloElementConversionException {
    // Given
    final Properties properties = new Properties() {

        {
            put(AccumuloPropertyNames.COLUMN_QUALIFIER, 1);
            put(AccumuloPropertyNames.PROP_1, 2);
        }
    };
    // When
    final long timestamp = converter.buildTimestamp(properties);
    // Then
    assertNotNull(timestamp);
}
Also used : Properties(uk.gov.gchq.gaffer.data.element.Properties) Test(org.junit.Test)

Example 28 with Properties

use of uk.gov.gchq.gaffer.data.element.Properties in project Gaffer by gchq.

the class AbstractAccumuloElementConverterTest method shouldSerialiseAndDeSerialiseBetweenPropertyAndValueMissingMiddleProperty.

@Test
public void shouldSerialiseAndDeSerialiseBetweenPropertyAndValueMissingMiddleProperty() throws AccumuloElementConversionException {
    Properties properties = new Properties();
    properties.put(AccumuloPropertyNames.PROP_1, 60);
    properties.put(AccumuloPropertyNames.PROP_3, 299);
    properties.put(AccumuloPropertyNames.PROP_4, 10);
    properties.put(AccumuloPropertyNames.COUNT, 8);
    final Value value = converter.getValueFromProperties(TestGroups.EDGE, properties);
    final Properties deSerialisedProperties = converter.getPropertiesFromValue(TestGroups.EDGE, value);
    assertEquals(60, deSerialisedProperties.get(AccumuloPropertyNames.PROP_1));
    assertEquals(299, deSerialisedProperties.get(AccumuloPropertyNames.PROP_3));
    assertEquals(10, deSerialisedProperties.get(AccumuloPropertyNames.PROP_4));
    assertEquals(8, deSerialisedProperties.get(AccumuloPropertyNames.COUNT));
}
Also used : Value(org.apache.accumulo.core.data.Value) Properties(uk.gov.gchq.gaffer.data.element.Properties) Test(org.junit.Test)

Example 29 with Properties

use of uk.gov.gchq.gaffer.data.element.Properties in project Gaffer by gchq.

the class RowIdAggregatorTest method testAggregatingMultiplePropertySetsAcrossRowIDRange.

private void testAggregatingMultiplePropertySetsAcrossRowIDRange(final AccumuloStore store, final AccumuloElementConverter elementConverter) throws StoreException, AccumuloElementConversionException, RangeFactoryException {
    String visibilityString = "public";
    try {
        // Create table
        // (this method creates the table, removes the versioning iterator, and adds the SetOfStatisticsCombiner iterator).
        TableUtils.createTable(store);
        final Properties properties1 = new Properties();
        properties1.put(AccumuloPropertyNames.COUNT, 1);
        final Properties properties2 = new Properties();
        properties2.put(AccumuloPropertyNames.COUNT, 1);
        final Properties properties3 = new Properties();
        properties3.put(AccumuloPropertyNames.COUNT, 2);
        // Create edge
        final Edge edge = new Edge(TestGroups.EDGE);
        edge.setSource("2");
        edge.setDestination("1");
        edge.setDirected(true);
        edge.putProperty(AccumuloPropertyNames.COLUMN_QUALIFIER, 1);
        edge.putProperty(AccumuloPropertyNames.PROP_1, 0);
        edge.putProperty(AccumuloPropertyNames.PROP_2, 0);
        edge.putProperty(AccumuloPropertyNames.PROP_3, 0);
        edge.putProperty(AccumuloPropertyNames.PROP_4, 0);
        final Edge edge2 = new Edge(TestGroups.EDGE);
        edge2.setSource("B");
        edge2.setDestination("Z");
        edge2.setDirected(true);
        edge2.putProperty(AccumuloPropertyNames.COLUMN_QUALIFIER, 1);
        edge2.putProperty(AccumuloPropertyNames.PROP_1, 1);
        edge2.putProperty(AccumuloPropertyNames.PROP_2, 1);
        edge2.putProperty(AccumuloPropertyNames.PROP_3, 1);
        edge2.putProperty(AccumuloPropertyNames.PROP_4, 1);
        final Edge edge3 = new Edge(TestGroups.EDGE);
        edge3.setSource("3");
        edge3.setDestination("8");
        edge3.setDirected(true);
        edge3.putProperty(AccumuloPropertyNames.COLUMN_QUALIFIER, 1);
        edge3.putProperty(AccumuloPropertyNames.PROP_1, 0);
        edge3.putProperty(AccumuloPropertyNames.PROP_2, 0);
        edge3.putProperty(AccumuloPropertyNames.PROP_3, 0);
        edge3.putProperty(AccumuloPropertyNames.PROP_4, 0);
        final Edge edge6 = new Edge("BasicEdge2");
        edge6.setSource("1");
        edge6.setDestination("5");
        edge6.setDirected(true);
        edge6.putProperty(AccumuloPropertyNames.COLUMN_QUALIFIER, 2);
        edge6.putProperty(AccumuloPropertyNames.PROP_1, 0);
        edge6.putProperty(AccumuloPropertyNames.PROP_2, 0);
        edge6.putProperty(AccumuloPropertyNames.PROP_3, 0);
        edge6.putProperty(AccumuloPropertyNames.PROP_4, 0);
        final Edge edge7 = new Edge("BasicEdge2");
        edge7.setSource("2");
        edge7.setDestination("6");
        edge7.setDirected(true);
        edge7.putProperty(AccumuloPropertyNames.COLUMN_QUALIFIER, 1);
        edge7.putProperty(AccumuloPropertyNames.PROP_1, 0);
        edge7.putProperty(AccumuloPropertyNames.PROP_2, 0);
        edge7.putProperty(AccumuloPropertyNames.PROP_3, 0);
        edge7.putProperty(AccumuloPropertyNames.PROP_4, 0);
        final Edge edge8 = new Edge("BasicEdge2");
        edge8.setSource("4");
        edge8.setDestination("8");
        edge8.setDirected(true);
        edge8.putProperty(AccumuloPropertyNames.COLUMN_QUALIFIER, 2);
        edge8.putProperty(AccumuloPropertyNames.PROP_1, 0);
        edge8.putProperty(AccumuloPropertyNames.PROP_2, 0);
        edge8.putProperty(AccumuloPropertyNames.PROP_3, 0);
        edge8.putProperty(AccumuloPropertyNames.PROP_4, 0);
        final Edge edge9 = new Edge("BasicEdge2");
        edge9.setSource("5");
        edge9.setDestination("9");
        edge9.setDirected(true);
        edge9.putProperty(AccumuloPropertyNames.COLUMN_QUALIFIER, 2);
        edge9.putProperty(AccumuloPropertyNames.PROP_1, 0);
        edge9.putProperty(AccumuloPropertyNames.PROP_2, 0);
        edge9.putProperty(AccumuloPropertyNames.PROP_3, 0);
        edge9.putProperty(AccumuloPropertyNames.PROP_4, 0);
        // Accumulo key
        final Key key = elementConverter.getKeysFromEdge(edge).getFirst();
        final Key key2 = elementConverter.getKeysFromEdge(edge2).getFirst();
        final Key key3 = elementConverter.getKeysFromEdge(edge3).getFirst();
        final Key key4 = elementConverter.getKeysFromEdge(edge6).getFirst();
        final Key key5 = elementConverter.getKeysFromEdge(edge7).getFirst();
        final Key key6 = elementConverter.getKeysFromEdge(edge8).getFirst();
        final Key key7 = elementConverter.getKeysFromEdge(edge9).getFirst();
        // Accumulo values
        final Value value1 = elementConverter.getValueFromProperties(TestGroups.EDGE, properties1);
        final Value value2 = elementConverter.getValueFromProperties(TestGroups.EDGE, properties2);
        final Value value3 = elementConverter.getValueFromProperties(TestGroups.EDGE, properties3);
        final Value value4 = elementConverter.getValueFromProperties(TestGroups.EDGE_2, properties1);
        final Value value5 = elementConverter.getValueFromProperties(TestGroups.EDGE_2, properties2);
        //Create mutation
        final Mutation m1 = new Mutation(key.getRow());
        m1.put(key.getColumnFamily(), key.getColumnQualifier(), new ColumnVisibility(key.getColumnVisibility()), key.getTimestamp(), value1);
        final Mutation m2 = new Mutation(key.getRow());
        m2.put(key.getColumnFamily(), key.getColumnQualifier(), new ColumnVisibility(key.getColumnVisibility()), key.getTimestamp(), value2);
        final Mutation m3 = new Mutation(key.getRow());
        m3.put(key.getColumnFamily(), key.getColumnQualifier(), new ColumnVisibility(key.getColumnVisibility()), key.getTimestamp(), value3);
        final Mutation m4 = new Mutation(key2.getRow());
        m4.put(key2.getColumnFamily(), key2.getColumnQualifier(), new ColumnVisibility(key2.getColumnVisibility()), key2.getTimestamp(), value1);
        final Mutation m5 = new Mutation(key.getRow());
        m5.put(key3.getColumnFamily(), key3.getColumnQualifier(), new ColumnVisibility(key3.getColumnVisibility()), key3.getTimestamp(), value1);
        final Mutation m6 = new Mutation(key4.getRow());
        m6.put(key4.getColumnFamily(), key4.getColumnQualifier(), new ColumnVisibility(key4.getColumnVisibility()), key4.getTimestamp(), value4);
        final Mutation m7 = new Mutation(key5.getRow());
        m7.put(key5.getColumnFamily(), key5.getColumnQualifier(), new ColumnVisibility(key5.getColumnVisibility()), key5.getTimestamp(), value5);
        final Mutation m8 = new Mutation(key6.getRow());
        m8.put(key6.getColumnFamily(), key6.getColumnQualifier(), new ColumnVisibility(key6.getColumnVisibility()), key6.getTimestamp(), value5);
        final Mutation m9 = new Mutation(key7.getRow());
        m9.put(key7.getColumnFamily(), key7.getColumnQualifier(), new ColumnVisibility(key7.getColumnVisibility()), key7.getTimestamp(), value5);
        // Write mutation
        final BatchWriterConfig writerConfig = new BatchWriterConfig();
        writerConfig.setMaxMemory(1000000L);
        writerConfig.setMaxLatency(1000L, TimeUnit.MILLISECONDS);
        writerConfig.setMaxWriteThreads(1);
        final BatchWriter writer = store.getConnection().createBatchWriter(store.getProperties().getTable(), writerConfig);
        writer.addMutation(m1);
        writer.addMutation(m2);
        writer.addMutation(m3);
        writer.addMutation(m4);
        writer.addMutation(m5);
        writer.addMutation(m6);
        writer.addMutation(m7);
        writer.addMutation(m8);
        writer.addMutation(m9);
        writer.close();
        // Read data back and check we get one merged element
        final Authorizations authorizations = new Authorizations(visibilityString);
        final BatchScanner scanner = store.getConnection().createBatchScanner(store.getProperties().getTable(), authorizations, 1000);
        try {
            scanner.addScanIterator(store.getKeyPackage().getIteratorFactory().getRowIDAggregatorIteratorSetting(store, "BasicEdge2"));
        } catch (IteratorSettingException e) {
            fail(e.getMessage());
        }
        final RangeFactory rangeF = store.getKeyPackage().getRangeFactory();
        final Range r = rangeF.getRangeFromPair(new Pair<ElementSeed>((new EntitySeed("1")), new EntitySeed("4")), new SummariseGroupOverRanges());
        final Range r2 = rangeF.getRangeFromPair(new Pair<ElementSeed>((new EntitySeed("5")), new EntitySeed("5")), new SummariseGroupOverRanges());
        scanner.setRanges(Arrays.asList(r, r2));
        final Iterator<Entry<Key, Value>> it = scanner.iterator();
        Entry<Key, Value> entry = it.next();
        Element readEdge = elementConverter.getFullElement(entry.getKey(), entry.getValue());
        Edge expectedEdge = new Edge("BasicEdge2");
        expectedEdge.setSource("4");
        expectedEdge.setDestination("8");
        expectedEdge.setDirected(true);
        expectedEdge.putProperty(AccumuloPropertyNames.COLUMN_QUALIFIER, 5);
        expectedEdge.putProperty(AccumuloPropertyNames.COUNT, 3);
        assertEquals(expectedEdge, readEdge);
        assertEquals(5, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER));
        assertEquals(3, readEdge.getProperty(AccumuloPropertyNames.COUNT));
        // Check we get the Result of the second provided range
        assertTrue(it.hasNext());
        entry = it.next();
        readEdge = elementConverter.getFullElement(entry.getKey(), entry.getValue());
        expectedEdge = new Edge("BasicEdge2");
        expectedEdge.setSource("5");
        expectedEdge.setDestination("9");
        expectedEdge.setDirected(true);
        expectedEdge.putProperty(AccumuloPropertyNames.COLUMN_QUALIFIER, 2);
        expectedEdge.putProperty(AccumuloPropertyNames.COUNT, 1);
        assertEquals(expectedEdge, readEdge);
        //Check no additional rows are found. (For a table of this size we shouldn't see this)
        if (it.hasNext()) {
            fail("Additional row found.");
        }
    } catch (AccumuloException | TableExistsException | TableNotFoundException e) {
        fail(this.getClass().getSimpleName() + " failed with exception: " + e);
    }
}
Also used : Element(uk.gov.gchq.gaffer.data.element.Element) BatchScanner(org.apache.accumulo.core.client.BatchScanner) Properties(uk.gov.gchq.gaffer.data.element.Properties) AccumuloProperties(uk.gov.gchq.gaffer.accumulostore.AccumuloProperties) RangeFactory(uk.gov.gchq.gaffer.accumulostore.key.RangeFactory) TableNotFoundException(org.apache.accumulo.core.client.TableNotFoundException) Entry(java.util.Map.Entry) SummariseGroupOverRanges(uk.gov.gchq.gaffer.accumulostore.operation.impl.SummariseGroupOverRanges) BatchWriterConfig(org.apache.accumulo.core.client.BatchWriterConfig) ColumnVisibility(org.apache.accumulo.core.security.ColumnVisibility) AccumuloException(org.apache.accumulo.core.client.AccumuloException) Authorizations(org.apache.accumulo.core.security.Authorizations) IteratorSettingException(uk.gov.gchq.gaffer.accumulostore.key.exception.IteratorSettingException) Range(org.apache.accumulo.core.data.Range) Value(org.apache.accumulo.core.data.Value) EntitySeed(uk.gov.gchq.gaffer.operation.data.EntitySeed) TableExistsException(org.apache.accumulo.core.client.TableExistsException) ElementSeed(uk.gov.gchq.gaffer.operation.data.ElementSeed) Mutation(org.apache.accumulo.core.data.Mutation) BatchWriter(org.apache.accumulo.core.client.BatchWriter) Edge(uk.gov.gchq.gaffer.data.element.Edge) Key(org.apache.accumulo.core.data.Key)

Example 30 with Properties

use of uk.gov.gchq.gaffer.data.element.Properties in project Gaffer by gchq.

the class CoreKeyGroupByAggregatorIteratorTest method testAggregatingSinglePropertySet.

public void testAggregatingSinglePropertySet(final AccumuloStore store, final AccumuloElementConverter elementConverter) throws StoreException, AccumuloElementConversionException {
    String visibilityString = "public";
    try {
        // Create edge
        final Edge edge = new Edge(TestGroups.EDGE);
        edge.setSource("1");
        edge.setDestination("2");
        edge.setDirected(true);
        edge.putProperty(AccumuloPropertyNames.COLUMN_QUALIFIER, 8);
        edge.putProperty(AccumuloPropertyNames.COUNT, 1);
        final Properties properties1 = new Properties();
        properties1.put(AccumuloPropertyNames.COUNT, 1);
        // Accumulo key
        final Key key = elementConverter.getKeysFromEdge(edge).getFirst();
        // Accumulo values
        final Value value1 = elementConverter.getValueFromProperties(TestGroups.EDGE, properties1);
        // Create mutation
        final Mutation m1 = new Mutation(key.getRow());
        m1.put(key.getColumnFamily(), key.getColumnQualifier(), new ColumnVisibility(key.getColumnVisibility()), key.getTimestamp(), value1);
        // Write mutation
        final BatchWriterConfig writerConfig = new BatchWriterConfig();
        writerConfig.setMaxMemory(1000000L);
        writerConfig.setMaxLatency(1000L, TimeUnit.MILLISECONDS);
        writerConfig.setMaxWriteThreads(1);
        final BatchWriter writer = store.getConnection().createBatchWriter(store.getProperties().getTable(), writerConfig);
        writer.addMutation(m1);
        writer.close();
        final Edge expectedEdge = new Edge(TestGroups.EDGE);
        expectedEdge.setSource("1");
        expectedEdge.setDestination("2");
        expectedEdge.setDirected(true);
        expectedEdge.putProperty(AccumuloPropertyNames.COLUMN_QUALIFIER, 8);
        expectedEdge.putProperty(AccumuloPropertyNames.COUNT, 1);
        // Read data back and check we get one merged element
        final Authorizations authorizations = new Authorizations(visibilityString);
        final Scanner scanner = store.getConnection().createScanner(store.getProperties().getTable(), authorizations);
        final IteratorSetting iteratorSetting = new IteratorSettingBuilder(AccumuloStoreConstants.COLUMN_QUALIFIER_AGGREGATOR_ITERATOR_PRIORITY, "KeyCombiner", CoreKeyGroupByAggregatorIterator.class).all().view(new View.Builder().edge(TestGroups.EDGE, new ViewElementDefinition.Builder().groupBy().build()).build()).schema(store.getSchema()).keyConverter(store.getKeyPackage().getKeyConverter()).build();
        scanner.addScanIterator(iteratorSetting);
        final Iterator<Entry<Key, Value>> it = scanner.iterator();
        final Entry<Key, Value> entry = it.next();
        final Element readEdge = elementConverter.getFullElement(entry.getKey(), entry.getValue());
        assertEquals(expectedEdge, readEdge);
        assertEquals(8, readEdge.getProperty(AccumuloPropertyNames.COLUMN_QUALIFIER));
        assertEquals(1, readEdge.getProperty(AccumuloPropertyNames.COUNT));
        // Check no more entries
        if (it.hasNext()) {
            fail("Additional row found.");
        }
    } catch (AccumuloException | TableNotFoundException e) {
        fail(this.getClass().getSimpleName() + " failed with exception: " + e);
    }
}
Also used : Scanner(org.apache.accumulo.core.client.Scanner) AccumuloException(org.apache.accumulo.core.client.AccumuloException) Authorizations(org.apache.accumulo.core.security.Authorizations) IteratorSettingBuilder(uk.gov.gchq.gaffer.accumulostore.utils.IteratorSettingBuilder) Element(uk.gov.gchq.gaffer.data.element.Element) Properties(uk.gov.gchq.gaffer.data.element.Properties) AccumuloProperties(uk.gov.gchq.gaffer.accumulostore.AccumuloProperties) IteratorSettingBuilder(uk.gov.gchq.gaffer.accumulostore.utils.IteratorSettingBuilder) TableNotFoundException(org.apache.accumulo.core.client.TableNotFoundException) Entry(java.util.Map.Entry) IteratorSetting(org.apache.accumulo.core.client.IteratorSetting) Value(org.apache.accumulo.core.data.Value) BatchWriterConfig(org.apache.accumulo.core.client.BatchWriterConfig) Mutation(org.apache.accumulo.core.data.Mutation) ColumnVisibility(org.apache.accumulo.core.security.ColumnVisibility) BatchWriter(org.apache.accumulo.core.client.BatchWriter) Edge(uk.gov.gchq.gaffer.data.element.Edge) Key(org.apache.accumulo.core.data.Key)

Aggregations

Properties (uk.gov.gchq.gaffer.data.element.Properties)31 Test (org.junit.Test)16 Value (org.apache.accumulo.core.data.Value)11 AccumuloElementConversionException (uk.gov.gchq.gaffer.accumulostore.key.exception.AccumuloElementConversionException)8 Key (org.apache.accumulo.core.data.Key)7 Edge (uk.gov.gchq.gaffer.data.element.Edge)6 Schema (uk.gov.gchq.gaffer.store.schema.Schema)5 Entity (uk.gov.gchq.gaffer.data.element.Entity)4 SchemaElementDefinition (uk.gov.gchq.gaffer.store.schema.SchemaElementDefinition)4 Element (uk.gov.gchq.gaffer.data.element.Element)3 ElementAggregator (uk.gov.gchq.gaffer.data.element.function.ElementAggregator)3 File (java.io.File)2 UnsupportedEncodingException (java.io.UnsupportedEncodingException)2 ArrayList (java.util.ArrayList)2 HashSet (java.util.HashSet)2 Entry (java.util.Map.Entry)2 Random (java.util.Random)2 AccumuloException (org.apache.accumulo.core.client.AccumuloException)2 BatchWriter (org.apache.accumulo.core.client.BatchWriter)2 BatchWriterConfig (org.apache.accumulo.core.client.BatchWriterConfig)2