Examples with EntitySeed uk.gov.gchq.gaffer.operation.data.EntitySeed used on opensource projects

Example 16 with EntitySeed

use of uk.gov.gchq.gaffer.operation.data.EntitySeed in project Gaffer by gchq.

the class GetElementsInRangesTest method shouldSerialiseAndDeserialiseOperation.

@Test
@Override
public void shouldSerialiseAndDeserialiseOperation() throws SerialisationException {
    // Given
    final List<Pair<EntitySeed>> pairList = new ArrayList<>();
    final Pair<EntitySeed> pair1 = new Pair<>(AccumuloTestData.SEED_SOURCE_1, AccumuloTestData.SEED_DESTINATION_1);
    final Pair<EntitySeed> pair2 = new Pair<>(AccumuloTestData.SEED_SOURCE_2, AccumuloTestData.SEED_DESTINATION_2);
    pairList.add(pair1);
    pairList.add(pair2);
    final GetElementsInRanges<Pair<EntitySeed>, Edge> op = new GetElementsInRanges<>(pairList);
    // When
    byte[] json = serialiser.serialise(op, true);
    final GetElementsInRanges<Pair<EntitySeed>, Edge> deserialisedOp = serialiser.deserialise(json, GetElementsInRanges.class);
    // Then
    final Iterator itrPairs = deserialisedOp.getSeeds().iterator();
    assertEquals(pair1, itrPairs.next());
    assertEquals(pair2, itrPairs.next());
    assertFalse(itrPairs.hasNext());
}

Example 17 with EntitySeed

use of uk.gov.gchq.gaffer.operation.data.EntitySeed in project Gaffer by gchq.

the class GetEntitiesInRangesTest method shouldSerialiseAndDeserialiseOperation.

@Test
@Override
public void shouldSerialiseAndDeserialiseOperation() throws SerialisationException {
    // Given
    final List<Pair<EntitySeed>> pairList = new ArrayList<>();
    final Pair<EntitySeed> pair1 = new Pair<>(AccumuloTestData.SEED_SOURCE_1, AccumuloTestData.SEED_DESTINATION_1);
    final Pair<EntitySeed> pair2 = new Pair<>(AccumuloTestData.SEED_SOURCE_2, AccumuloTestData.SEED_DESTINATION_2);
    pairList.add(pair1);
    pairList.add(pair2);
    final GetEntitiesInRanges<Pair<EntitySeed>> op = new GetEntitiesInRanges<>(pairList);
    // When
    byte[] json = serialiser.serialise(op, true);
    final GetEntitiesInRanges<Pair<EntitySeed>> deserialisedOp = serialiser.deserialise(json, GetEntitiesInRanges.class);
    // Then
    final Iterator itrPairs = deserialisedOp.getSeeds().iterator();
    assertEquals(pair1, itrPairs.next());
    assertEquals(pair2, itrPairs.next());
    assertFalse(itrPairs.hasNext());
}

Example 18 with EntitySeed

use of uk.gov.gchq.gaffer.operation.data.EntitySeed in project Gaffer by gchq.

the class AccumuloIDBetweenSetsRetrieverTest method shouldDealWithDirectedEdgesOnlyOption.

private void shouldDealWithDirectedEdgesOnlyOption(boolean loadIntoMemory, AccumuloStore store) {
    try {
        final Set<Element> data = new HashSet<>();
        data.add(AccumuloTestData.EDGE_A_B_1);
        data.add(AccumuloTestData.EDGE_A_B_2);
        addElements(data, store, new User());
        // Set undirected edges only option, and query for edges between {A} and {B} - should get EDGE_B2_A2
        final AbstractAccumuloTwoSetSeededOperation<EntitySeed, Element> op = new GetElementsBetweenSets<>(AccumuloTestData.SEED_A_SET, AccumuloTestData.SEED_B_SET, defaultView);
        op.setIncludeEdges(IncludeEdgeType.UNDIRECTED);
        op.setIncludeEntities(false);
        final Set<Element> results = returnElementsFromOperation(store, op, new User(), loadIntoMemory);
        assertThat(results, IsCollectionContaining.hasItem(AccumuloTestData.EDGE_A_B_2));
        op.setIncludeEdges(IncludeEdgeType.DIRECTED);
        final Set<Element> secondResults = returnElementsFromOperation(store, op, new User(), loadIntoMemory);
        assertThat(secondResults, IsCollectionContaining.hasItem(AccumuloTestData.EDGE_A_B_1));
        // Turn off directed / undirected edges only option and check get both EDGE_A1_B1 and EDGE_B2_A2
        op.setIncludeEdges(IncludeEdgeType.ALL);
        final Set<Element> thirdResults = returnElementsFromOperation(store, op, new User(), loadIntoMemory);
        assertThat(thirdResults, IsCollectionContaining.hasItem(AccumuloTestData.EDGE_A_B_2));
    } catch (StoreException e) {
        fail("Failed to set up graph in Accumulo with exception: " + e);
    }
}

Example 19 with EntitySeed

use of uk.gov.gchq.gaffer.operation.data.EntitySeed in project Gaffer by gchq.

the class AccumuloIDBetweenSetsRetrieverTest method shouldDealWithFalsePositives.

private void shouldDealWithFalsePositives(final boolean loadIntoMemory, final AccumuloStore store) throws StoreException, AccumuloElementConversionException {
    final Set<EntitySeed> seeds = new HashSet<>();
    seeds.add(AccumuloTestData.SEED_A0);
    seeds.add(AccumuloTestData.SEED_A23);
    // positive sensible.
    for (int i = 0; i < 10; i++) {
        seeds.add(new EntitySeed("abc" + i));
    }
    // Need to make sure that the Bloom filter we create has the same size and the same number of hashes as the
    // one that GraphElementsWithStatisticsWithinSetRetriever creates.
    final int numItemsToBeAdded = loadIntoMemory ? seeds.size() : 20;
    if (!loadIntoMemory) {
        store.getProperties().setMaxEntriesForBatchScanner("20");
    }
    // Find something that will give a false positive
    // Need to repeat the logic used in the getGraphElementsWithStatisticsWithinSet() method.
    // Calculate sensible size of filter, aiming for false positive rate of 1 in 10000, with a maximum size of
    // maxBloomFilterToPassToAnIterator bytes.
    int size = (int) (-numItemsToBeAdded * Math.log(0.0001) / (Math.pow(Math.log(2.0), 2.0)));
    size = Math.min(size, store.getProperties().getMaxBloomFilterToPassToAnIterator());
    // Work out optimal number of hashes to use in Bloom filter based on size of set - optimal number of hashes is
    // (m/n)ln 2 where m is the size of the filter in bits and n is the number of items that will be added to the set.
    final int numHashes = Math.max(1, (int) ((size / numItemsToBeAdded) * Math.log(2)));
    // Create Bloom filter and add seeds to it
    final BloomFilter filter = new BloomFilter(size, numHashes, Hash.MURMUR_HASH);
    for (final EntitySeed seed : seeds) {
        filter.add(new Key(store.getKeyPackage().getKeyConverter().serialiseVertex(seed.getVertex())));
    }
    // Test random items against it - should only have to shouldRetieveElementsInRangeBetweenSeeds MAX_SIZE_BLOOM_FILTER / 2 on average before find a
    // false positive (but impose an arbitrary limit to avoid an infinite loop if there's a problem).
    int count = 0;
    int maxNumberOfTries = 50 * store.getProperties().getMaxBloomFilterToPassToAnIterator();
    while (count < maxNumberOfTries) {
        count++;
        if (filter.membershipTest(new Key(("" + count).getBytes()))) {
            break;
        }
    }
    if (count == maxNumberOfTries) {
        fail("Didn't find a false positive");
    }
    // False positive is "" + count so create an edge from seeds to that
    final Edge edge = new Edge(TestGroups.EDGE, "A0", "" + count, true);
    edge.putProperty(AccumuloPropertyNames.COUNT, 1000000);
    Set<Element> data = new HashSet<>();
    data.add(edge);
    final User user = new User();
    addElements(data, store, user);
    // Now query for all edges in set - shouldn't get the false positive
    AbstractAccumuloTwoSetSeededOperation<EntitySeed, Element> op = new GetElementsBetweenSets<>(AccumuloTestData.SEED_A0_SET, seeds, defaultView);
    final Set<Element> results = returnElementsFromOperation(store, op, new User(), loadIntoMemory);
    // Check results are as expected
    assertEquals(2, results.size());
    assertThat(results, IsCollectionContaining.hasItems(AccumuloTestData.EDGE_A0_A23, AccumuloTestData.A0_ENTITY));
}

Example 20 with EntitySeed

use of uk.gov.gchq.gaffer.operation.data.EntitySeed in project Gaffer by gchq.

the class AccumuloIDBetweenSetsRetrieverTest method testEdgesWithinSetAAreNotReturned.

private void testEdgesWithinSetAAreNotReturned(final boolean loadIntoMemory, final AccumuloStore store) throws StoreException {
    final AbstractAccumuloTwoSetSeededOperation<EntitySeed, Element> op = new GetElementsBetweenSets<>(AccumuloTestData.SEED_A0_A23_SET, AccumuloTestData.SEED_B_SET, defaultView);
    final Set<Element> betweenA0A23_B_Results = returnElementsFromOperation(store, op, new User(), loadIntoMemory);
    //Should have the two entities A0 A23 but not the edge A0-23
    assertEquals(2, betweenA0A23_B_Results.size());
    assertThat(betweenA0A23_B_Results, IsCollectionContaining.hasItems(AccumuloTestData.A0_ENTITY, AccumuloTestData.A23_ENTITY));
}