Examples with SetMathDescription cbit.vcell.client.task.SetMathDescription used on opensource projects

Example 1 with SetMathDescription

use of cbit.vcell.client.task.SetMathDescription in project vcell by virtualcell.

the class ClientRequestManager method runSimulations.

public void runSimulations(final ClientSimManager clientSimManager, final Simulation[] simulations) {
    DocumentWindowManager documentWindowManager = clientSimManager.getDocumentWindowManager();
    /*	run some quick checks to see if we need to do a SaveAs */
    boolean needSaveAs = false;
    if (documentWindowManager.getVCDocument().getVersion() == null) {
        // never saved
        needSaveAs = true;
    } else if (!documentWindowManager.getVCDocument().getVersion().getOwner().compareEqual(getDocumentManager().getUser())) {
        // not the owner
        // keep the user informed this time
        String choice = PopupGenerator.showWarningDialog(documentWindowManager, getUserPreferences(), UserMessage.warn_SaveNotOwner, null);
        if (choice.equals(UserMessage.OPTION_SAVE_AS_NEW)) {
            needSaveAs = true;
        } else {
            // user canceled, just show existing document
            getMdiManager().showWindow(documentWindowManager.getManagerID());
            throw new UserCancelException("user canceled");
        }
    }
    // Before running the simulation, check if all the sizes of structures are set
    if (simulations != null && simulations.length > 0) {
        VCDocument vcd = documentWindowManager.getVCDocument();
        if (vcd instanceof BioModel) {
            String stochChkMsg = null;
            // we want to check when there is stochastic application if the rate laws set in model can be automatically transformed.
            for (int i = 0; i < simulations.length; i++) {
                if (simulations[i].getMathDescription().isNonSpatialStoch() || simulations[i].getMathDescription().isSpatialStoch() || simulations[i].getMathDescription().isSpatialHybrid()) {
                    if (stochChkMsg == null) {
                        stochChkMsg = ((BioModel) vcd).getModel().isValidForStochApp();
                    }
                    if (!(stochChkMsg.equals(""))) {
                        DialogUtils.showErrorDialog(documentWindowManager.getComponent(), "Problem in simulation: " + simulations[i].getName() + ".\n" + stochChkMsg);
                        throw new RuntimeException("Problem in simulation: " + simulations[i].getName() + "\n" + stochChkMsg);
                    }
                }
            }
        }
    }
    // 
    for (int i = 0; simulations != null && i < simulations.length; i++) {
        if (simulations[i].getSimulationVersion() != null && simulations[i].getSimulationVersion().getParentSimulationReference() != null) {
            simulations[i].clearVersion();
        }
    }
    /* now start the dirty work */
    /* block document window */
    JFrame currentDocumentWindow = getMdiManager().blockWindow(documentWindowManager.getManagerID());
    /* prepare hashtable for tasks */
    Hashtable<String, Object> hash = new Hashtable<String, Object>();
    hash.put("mdiManager", getMdiManager());
    hash.put(DocumentManager.IDENT, getDocumentManager());
    hash.put(CommonTask.DOCUMENT_WINDOW_MANAGER.name, documentWindowManager);
    hash.put("currentDocumentWindow", currentDocumentWindow);
    hash.put("clientSimManager", clientSimManager);
    hash.put("simulations", simulations);
    hash.put("jobManager", getClientServerManager().getJobManager());
    hash.put("requestManager", this);
    /* create tasks */
    AsynchClientTask[] tasks = null;
    if (needSaveAs) {
        // check document consistency first
        AsynchClientTask documentValid = new DocumentValidTask();
        AsynchClientTask setMathDescription = new SetMathDescription();
        // get a new name
        AsynchClientTask newName = new NewName();
        // save it
        AsynchClientTask saveDocument = new SaveDocument();
        // clean up
        AsynchClientTask finishSave = new FinishSave();
        // run the simulations
        AsynchClientTask runSims = new RunSims();
        // assemble array
        tasks = new AsynchClientTask[] { documentValid, setMathDescription, newName, saveDocument, finishSave, runSims };
    } else {
        // check document consistency first
        AsynchClientTask documentValid = new DocumentValidTask();
        AsynchClientTask setMathDescription = new SetMathDescription();
        // check if unchanged document
        AsynchClientTask checkUnchanged = new CheckUnchanged(true);
        // save it
        AsynchClientTask saveDocument = new SaveDocument();
        // check for lost results
        AsynchClientTask checkBeforeDelete = new CheckBeforeDelete();
        // delete old document
        AsynchClientTask deleteOldDocument = new DeleteOldDocument();
        // clean up
        AsynchClientTask finishSave = new FinishSave();
        // run the simulations
        AsynchClientTask runSims = new RunSims();
        // assemble array
        tasks = new AsynchClientTask[] { documentValid, setMathDescription, checkUnchanged, saveDocument, checkBeforeDelete, deleteOldDocument, finishSave, runSims };
    }
    /* run the tasks */
    ClientTaskDispatcher.dispatch(currentDocumentWindow, hash, tasks, true);
}

Example 2 with SetMathDescription

use of cbit.vcell.client.task.SetMathDescription in project vcell by virtualcell.

the class ClientRequestManager method saveDocument.

/**
 * Insert the method's description here.
 * Creation date: (5/27/2004 3:09:25 PM)
 * @param vcDocument cbit.vcell.document.VCDocument
 * @param replace boolean
 */
public void saveDocument(final DocumentWindowManager documentWindowManager, boolean replace, AsynchClientTask closeWindowTask) {
    /*	run some quick checks first to validate request to save or save edition */
    if (documentWindowManager.getVCDocument().getVersion() == null) {
        // it can never see this happening before, but check anyway and default to save as
        // but since we can allow user to save during closing, now it can happen
        // (save/save edition buttons should have not been enabled upon document window creation)
        System.out.println("\nIGNORED ERROR: should not have been able to use save/save edition on doc with no version key\n");
        saveDocumentAsNew(documentWindowManager, closeWindowTask);
        return;
    }
    if (!documentWindowManager.getVCDocument().getVersion().getOwner().compareEqual(getDocumentManager().getUser())) {
        // not the owner - this should also not happen, but check anyway...
        // keep the user informed this time
        System.out.println("\nIGNORED ERROR: should not have been able to use save/save edition on doc with different owner\n");
        String choice = PopupGenerator.showWarningDialog(documentWindowManager, getUserPreferences(), UserMessage.warn_SaveNotOwner, null);
        if (choice.equals(UserMessage.OPTION_SAVE_AS_NEW)) {
            // user chose to Save As
            saveDocumentAsNew(documentWindowManager, closeWindowTask);
            return;
        } else {
            if (closeWindowTask == null) {
                // user canceled, just show existing document
                getMdiManager().showWindow(documentWindowManager.getManagerID());
                return;
            } else {
                ClientTaskDispatcher.dispatch(documentWindowManager.getComponent(), new Hashtable<String, Object>(), new AsynchClientTask[] { closeWindowTask }, false);
            }
        }
    }
    /* request is valid, go ahead with save */
    /* block document window */
    JFrame currentDocumentWindow = getMdiManager().blockWindow(documentWindowManager.getManagerID());
    /* prepare hashtable for tasks */
    Hashtable<String, Object> hash = new Hashtable<String, Object>();
    hash.put("mdiManager", getMdiManager());
    hash.put(DocumentManager.IDENT, getDocumentManager());
    hash.put(CommonTask.DOCUMENT_WINDOW_MANAGER.name, documentWindowManager);
    hash.put("currentDocumentWindow", currentDocumentWindow);
    hash.put("requestManager", this);
    /* create tasks */
    // check document consistency first
    AsynchClientTask documentValid = new DocumentValidTask();
    AsynchClientTask setMathDescription = new SetMathDescription();
    // check if unchanged document
    AsynchClientTask checkUnchanged = new CheckUnchanged(false);
    // save it
    AsynchClientTask saveDocument = new SaveDocument();
    // clean up
    AsynchClientTask finishSave = new FinishSave();
    // assemble array
    AsynchClientTask[] tasks = null;
    if (replace) {
        // check for lost results
        AsynchClientTask checkBeforeDelete = new CheckBeforeDelete();
        // delete old document
        AsynchClientTask deleteOldDocument = new DeleteOldDocument();
        tasks = new AsynchClientTask[] { documentValid, setMathDescription, checkUnchanged, saveDocument, checkBeforeDelete, deleteOldDocument, finishSave };
    } else {
        tasks = new AsynchClientTask[] { documentValid, setMathDescription, checkUnchanged, saveDocument, finishSave };
    }
    if (closeWindowTask != null) {
        // replace finishSave
        tasks[tasks.length - 1] = closeWindowTask;
    }
    /* run tasks */
    ClientTaskDispatcher.dispatch(currentDocumentWindow, hash, tasks, false);
}

Example 3 with SetMathDescription

use of cbit.vcell.client.task.SetMathDescription in project vcell by virtualcell.

the class ClientRequestManager method saveDocumentAsNew.

/**
 * Insert the method's description here.
 * Creation date: (5/27/2004 3:09:25 PM)
 * @param vcDocument cbit.vcell.document.VCDocument
 */
public void saveDocumentAsNew(DocumentWindowManager documentWindowManager, AsynchClientTask closeWindowTask) {
    /* block document window */
    JFrame currentDocumentWindow = getMdiManager().blockWindow(documentWindowManager.getManagerID());
    /* prepare hashtable for tasks */
    Hashtable<String, Object> hash = new Hashtable<String, Object>();
    hash.put("mdiManager", getMdiManager());
    hash.put(DocumentManager.IDENT, getDocumentManager());
    hash.put(CommonTask.DOCUMENT_WINDOW_MANAGER.name, documentWindowManager);
    hash.put("currentDocumentWindow", currentDocumentWindow);
    hash.put("requestManager", this);
    /* create tasks */
    // check document consistency first
    AsynchClientTask documentValid = new DocumentValidTask();
    AsynchClientTask setMathDescription = new SetMathDescription();
    // get a new name
    AsynchClientTask newName = new NewName();
    // save it
    AsynchClientTask saveDocument = new SaveDocument();
    // clean up
    AsynchClientTask finishSave = new FinishSave();
    // assemble array
    AsynchClientTask[] tasks = new AsynchClientTask[] { documentValid, setMathDescription, newName, saveDocument, finishSave };
    if (closeWindowTask != null) {
        // replace finishSave
        tasks[tasks.length - 1] = closeWindowTask;
    }
    /* run tasks */
    ClientTaskDispatcher.dispatch(currentDocumentWindow, hash, tasks, false);
}