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Example 11 with UserAccountBean

use of org.akaza.openclinica.bean.login.UserAccountBean in project OpenClinica by OpenClinica.

the class UserAccountDAO method findAllByRole.

public Collection findAllByRole(String role1, String role2) {
    this.setTypesExpected();
    HashMap variables = new HashMap();
    variables.put(new Integer(1), role1);
    variables.put(new Integer(2), role2);
    ArrayList alist = null;
    alist = this.select(digester.getQuery("findAllByRole"), variables);
    ArrayList al = new ArrayList();
    Iterator it = alist.iterator();
    while (it.hasNext()) {
        UserAccountBean eb = (UserAccountBean) this.getEntityFromHashMap((HashMap) it.next(), true);
        al.add(eb);
    }
    return al;
}
Also used : HashMap(java.util.HashMap) ArrayList(java.util.ArrayList) Iterator(java.util.Iterator) UserAccountBean(org.akaza.openclinica.bean.login.UserAccountBean)

Example 12 with UserAccountBean

use of org.akaza.openclinica.bean.login.UserAccountBean in project OpenClinica by OpenClinica.

the class XsltTransformJob method executeInternal.

@Override
protected void executeInternal(JobExecutionContext context) {
    logger.info("Job " + context.getJobDetail().getDescription() + " started.");
    initDependencies(context.getScheduler());
    // need to generate a Locale for emailing users with i18n
    // TODO make dynamic?
    Locale locale = new Locale("en-US");
    ResourceBundleProvider.updateLocale(locale);
    ResourceBundle pageMessages = ResourceBundleProvider.getPageMessagesBundle();
    List<File> markForDelete = new LinkedList<File>();
    Boolean zipped = true;
    Boolean deleteOld = true;
    Boolean exceptions = false;
    JobDataMap dataMap = context.getMergedJobDataMap();
    String localeStr = dataMap.getString(LOCALE);
    String[] doNotDeleteUntilExtract = new String[4];
    int cnt = dataMap.getInt("count");
    DatasetBean datasetBean = null;
    if (localeStr != null) {
        locale = new Locale(localeStr);
        ResourceBundleProvider.updateLocale(locale);
        pageMessages = ResourceBundleProvider.getPageMessagesBundle();
    }
    // get the file information from the job
    String alertEmail = dataMap.getString(EMAIL);
    java.io.InputStream in = null;
    FileOutputStream endFileStream = null;
    UserAccountBean userBean = null;
    try {
        // init all fields from the data map
        int userAccountId = dataMap.getInt(USER_ID);
        int studyId = dataMap.getInt(STUDY_ID);
        String outputPath = dataMap.getString(POST_FILE_PATH);
        // get all user info, generate xml
        logger.debug("found output path: " + outputPath);
        String generalFileDir = dataMap.getString(XML_FILE_PATH);
        int dsId = dataMap.getInt(DATASET_ID);
        // JN: Change from earlier versions, cannot get static reference as
        // static references don't work. Reason being for example there could be
        // datasetId as a variable which is different for each dataset and
        // that needs to be loaded dynamically
        ExtractPropertyBean epBean = (ExtractPropertyBean) dataMap.get(EP_BEAN);
        File doNotDelDir = new File(generalFileDir);
        if (doNotDelDir.isDirectory()) {
            doNotDeleteUntilExtract = doNotDelDir.list();
        }
        zipped = epBean.getZipFormat();
        deleteOld = epBean.getDeleteOld();
        long sysTimeBegin = System.currentTimeMillis();
        userBean = (UserAccountBean) userAccountDao.findByPK(userAccountId);
        StudyBean currentStudy = (StudyBean) studyDao.findByPK(studyId);
        StudyBean parentStudy = (StudyBean) studyDao.findByPK(currentStudy.getParentStudyId());
        String successMsg = epBean.getSuccessMessage();
        String failureMsg = epBean.getFailureMessage();
        final long start = System.currentTimeMillis();
        datasetBean = (DatasetBean) datasetDao.findByPK(dsId);
        ExtractBean eb = generateFileService.generateExtractBean(datasetBean, currentStudy, parentStudy);
        // generate file directory for file service
        datasetBean.setName(datasetBean.getName().replaceAll(" ", "_"));
        logger.debug("--> job starting: ");
        HashMap<String, Integer> answerMap = odmFileCreation.createODMFile(epBean.getFormat(), sysTimeBegin, generalFileDir, datasetBean, currentStudy, "", eb, currentStudy.getId(), currentStudy.getParentStudyId(), "99", (Boolean) dataMap.get(ZIPPED), false, (Boolean) dataMap.get(DELETE_OLD), epBean.getOdmType(), userBean);
        // won't save a record of the XML to db
        // won't be a zipped file, so that we can submit it for
        // transformation
        // this will have to be toggled by the export data format? no, the
        // export file will have to be zipped/not zipped
        String ODMXMLFileName = "";
        int fId = 0;
        Iterator<Entry<String, Integer>> it = answerMap.entrySet().iterator();
        while (it.hasNext()) {
            JobTerminationMonitor.check();
            Entry<String, Integer> entry = it.next();
            String key = entry.getKey();
            Integer value = entry.getValue();
            // JN: Since there is a logic to
            ODMXMLFileName = key;
            // delete all the intermittent
            // files, this file could be a zip
            // file.
            Integer fileID = value;
            fId = fileID.intValue();
            logger.debug("found " + fId + " and " + ODMXMLFileName);
        }
        logger.info("Finished ODM generation of job " + context.getJobDetail().getDescription());
        // create dirs
        File output = new File(outputPath);
        if (!output.isDirectory()) {
            output.mkdirs();
        }
        int numXLS = epBean.getFileName().length;
        int fileCntr = 0;
        String xmlFilePath = new File(generalFileDir + ODMXMLFileName).toURI().toURL().toExternalForm();
        String endFile = null;
        File oldFilesPath = new File(generalFileDir);
        while (fileCntr < numXLS) {
            JobTerminationMonitor.check();
            String xsltPath = dataMap.getString(XSLT_PATH) + File.separator + epBean.getFileName()[fileCntr];
            in = new java.io.FileInputStream(xsltPath);
            Transformer transformer = transformerFactory.newTransformer(new StreamSource(in));
            endFile = outputPath + File.separator + epBean.getExportFileName()[fileCntr];
            endFileStream = new FileOutputStream(endFile);
            transformer.transform(new StreamSource(xmlFilePath), new StreamResult(endFileStream));
            // JN...CLOSE THE STREAM...HMMMM
            in.close();
            endFileStream.close();
            fileCntr++;
            JobTerminationMonitor.check();
        }
        if (oldFilesPath.isDirectory()) {
            markForDelete = Arrays.asList(oldFilesPath.listFiles());
        // logic to prevent deleting the file being created.
        }
        final double done = setFormat(new Double(System.currentTimeMillis() - start) / 1000);
        logger.info("--> job completed in " + done + " ms");
        // run post processing
        ProcessingFunction function = epBean.getPostProcessing();
        String subject = "";
        String jobName = dataMap.getString(XsltTriggerService.JOB_NAME);
        StringBuffer emailBuffer = new StringBuffer("");
        emailBuffer.append("<p>" + pageMessages.getString("email_header_1") + " " + EmailEngine.getAdminEmail() + " " + pageMessages.getString("email_header_2") + " Job Execution " + pageMessages.getString("email_header_3") + "</p>");
        emailBuffer.append("<P>Dataset: " + datasetBean.getName() + "</P>");
        emailBuffer.append("<P>Study: " + currentStudy.getName() + "</P>");
        if (function != null && function.getClass().equals(org.akaza.openclinica.bean.service.SqlProcessingFunction.class)) {
            String dbUrl = ((org.akaza.openclinica.bean.service.SqlProcessingFunction) function).getDatabaseUrl();
            int lastIndex = dbUrl.lastIndexOf('/');
            String schemaName = dbUrl.substring(lastIndex);
            int HostIndex = dbUrl.substring(0, lastIndex).indexOf("//");
            String Host = dbUrl.substring(HostIndex, lastIndex);
            emailBuffer.append("<P>Database: " + ((org.akaza.openclinica.bean.service.SqlProcessingFunction) function).getDatabaseType() + "</P>");
            emailBuffer.append("<P>Schema: " + schemaName.replace("/", "") + "</P>");
            emailBuffer.append("<P>Host: " + Host.replace("//", "") + "</P>");
        }
        emailBuffer.append("<p>" + pageMessages.getString("html_email_body_1") + datasetBean.getName() + pageMessages.getString("html_email_body_2_2") + "</p>");
        if (function != null) {
            function.setTransformFileName(outputPath + File.separator + dataMap.getString(POST_FILE_NAME));
            function.setODMXMLFileName(endFile);
            function.setXslFileName(dataMap.getString(XSL_FILE_PATH));
            function.setDeleteOld((Boolean) dataMap.get(POST_PROC_DELETE_OLD));
            function.setZip((Boolean) dataMap.get(POST_PROC_ZIP));
            function.setLocation(dataMap.getString(POST_PROC_LOCATION));
            function.setExportFileName(dataMap.getString(POST_PROC_EXPORT_NAME));
            File[] oldFiles = getOldFiles(outputPath, dataMap.getString(POST_PROC_LOCATION));
            function.setOldFiles(oldFiles);
            File[] intermediateFiles = getInterFiles(dataMap.getString(POST_FILE_PATH));
            ProcessingResultType message = function.run();
            // Delete these files only in case when there is no failure
            if (message.getCode().intValue() != 2) {
                deleteOldFiles(intermediateFiles);
            }
            final long done2 = System.currentTimeMillis() - start;
            logger.info("--> postprocessing completed in " + done2 + " ms, found result type " + message.getCode());
            logger.info("--> postprocessing completed in " + done2 + " ms, found result type " + message.getCode());
            if (!function.getClass().equals(org.akaza.openclinica.bean.service.SqlProcessingFunction.class)) {
                String archivedFile = dataMap.getString(POST_FILE_NAME) + "." + function.getFileType();
                // download the zip file
                if (function.isZip()) {
                    archivedFile = archivedFile + ".zip";
                }
                // post processing as well.
                if (function.getClass().equals(org.akaza.openclinica.bean.service.PdfProcessingFunction.class)) {
                    archivedFile = function.getArchivedFileName();
                }
                ArchivedDatasetFileBean fbFinal = generateFileRecord(archivedFile, outputPath, datasetBean, done, new File(outputPath + File.separator + archivedFile).length(), ExportFormatBean.PDFFILE, userAccountId);
                if (successMsg.contains("$linkURL")) {
                    successMsg = successMsg.replace("$linkURL", "<a href=\"" + CoreResources.getField("sysURL.base") + "AccessFile?fileId=" + fbFinal.getId() + "\">" + CoreResources.getField("sysURL.base") + "AccessFile?fileId=" + fbFinal.getId() + " </a>");
                }
                emailBuffer.append("<p>" + successMsg + "</p>");
                logger.debug("System time begining.." + sysTimeBegin);
                logger.debug("System time end.." + System.currentTimeMillis());
                double sysTimeEnd = setFormat((System.currentTimeMillis() - sysTimeBegin) / 1000);
                logger.debug("difference" + sysTimeEnd);
                if (fbFinal != null) {
                    fbFinal.setFileSize((int) bytesToKilo(new File(archivedFile).length()));
                    fbFinal.setRunTime(sysTimeEnd);
                }
            }
            // otherwise don't do it
            if (message.getCode().intValue() == 1) {
                if (jobName != null) {
                    subject = "Success: " + jobName;
                } else {
                    subject = "Success: " + datasetBean.getName();
                }
            } else if (message.getCode().intValue() == 2) {
                if (jobName != null) {
                    subject = "Failure: " + jobName;
                } else {
                    subject = "Failure: " + datasetBean.getName();
                }
                if (failureMsg != null && !failureMsg.isEmpty()) {
                    emailBuffer.append(failureMsg);
                }
                emailBuffer.append("<P>").append(message.getDescription());
                postErrorMessage(message.getDescription(), context);
            } else if (message.getCode().intValue() == 3) {
                if (jobName != null) {
                    subject = "Update: " + jobName;
                } else {
                    subject = "Update: " + datasetBean.getName();
                }
            }
        } else {
            // extract ran but no post-processing - we send an email with
            // success and url to link to
            // generate archived dataset file bean here, and use the id to
            // build the URL
            String archivedFilename = dataMap.getString(POST_FILE_NAME);
            // the zip file
            if (zipped) {
                archivedFilename = dataMap.getString(POST_FILE_NAME) + ".zip";
            }
            // delete old files now
            List<File> intermediateFiles = generateFileService.getOldFiles();
            String[] dontDelFiles = epBean.getDoNotDelFiles();
            //JN: The following is the code for zipping up the files, in case of more than one xsl being provided.
            if (dontDelFiles.length > 1 && zipped) {
                logger.debug("count =====" + cnt + "dontDelFiles length==---" + dontDelFiles.length);
                logger.debug("Entering this?" + cnt + "dontDelFiles" + dontDelFiles);
                String path = outputPath + File.separator;
                logger.debug("path = " + path);
                logger.debug("zipName?? = " + epBean.getZipName());
                String zipName = epBean.getZipName() == null || epBean.getZipName().isEmpty() ? endFile + ".zip" : path + epBean.getZipName() + ".zip";
                archivedFilename = new File(zipName).getName();
                zipAll(path, epBean.getDoNotDelFiles(), zipName);
                String[] tempArray = { archivedFilename };
                dontDelFiles = tempArray;
                endFile = archivedFilename;
            } else if (zipped) {
                markForDelete = zipxmls(markForDelete, endFile);
                endFile = endFile + ".zip";
                String[] temp = new String[dontDelFiles.length];
                int i = 0;
                while (i < dontDelFiles.length) {
                    temp[i] = dontDelFiles[i] + ".zip";
                    i++;
                }
                dontDelFiles = temp;
                // Actually deleting all the xml files which are produced
                // since its zipped
                FilenameFilter xmlFilter = new XMLFileFilter();
                File tempFile = new File(generalFileDir);
                deleteOldFiles(tempFile.listFiles(xmlFilter));
            }
            ArchivedDatasetFileBean fbFinal = generateFileRecord(archivedFilename, outputPath, datasetBean, done, new File(outputPath + File.separator + archivedFilename).length(), ExportFormatBean.TXTFILE, userAccountId);
            if (jobName != null) {
                subject = "Job Ran: " + jobName;
            } else {
                subject = "Job Ran: " + datasetBean.getName();
            }
            if (successMsg == null || successMsg.isEmpty()) {
                logger.info("email buffer??" + emailBuffer);
            } else {
                if (successMsg.contains("$linkURL")) {
                    successMsg = successMsg.replace("$linkURL", "<a href=\"" + CoreResources.getField("sysURL.base") + "AccessFile?fileId=" + fbFinal.getId() + "\">" + CoreResources.getField("sysURL.base") + "AccessFile?fileId=" + fbFinal.getId() + " </a>");
                }
                emailBuffer.append("<p>" + successMsg + "</p>");
            }
            if (deleteOld) {
                deleteIntermFiles(intermediateFiles, endFile, dontDelFiles);
                deleteIntermFiles(markForDelete, endFile, dontDelFiles);
            }
        }
        // email the message to the user
        emailBuffer.append("<p>" + pageMessages.getString("html_email_body_5") + "</p>");
        try {
            // @pgawade 19-April-2011 Log the event into audit_event table
            if (null != dataMap.get("job_type") && ((String) dataMap.get("job_type")).equalsIgnoreCase("exportJob")) {
                String extractName = (String) dataMap.get(XsltTriggerService.JOB_NAME);
                TriggerBean triggerBean = new TriggerBean();
                triggerBean.setDataset(datasetBean);
                triggerBean.setUserAccount(userBean);
                triggerBean.setFullName(extractName);
                String actionMsg = "You may access the " + (String) dataMap.get(XsltTriggerService.EXPORT_FORMAT) + " file by changing your study/site to " + currentStudy.getName() + " and selecting the Export Data icon for " + datasetBean.getName() + " dataset on the View Datasets page.";
                auditEventDAO.createRowForExtractDataJobSuccess(triggerBean, actionMsg);
            }
            mailSender.sendEmail(alertEmail, EmailEngine.getAdminEmail(), subject, emailBuffer.toString(), true);
        } catch (OpenClinicaSystemException ose) {
            // Do Nothing, In the future we might want to have an email
            // status added to system.
            logger.info("exception sending mail: " + ose.getMessage());
            logger.error("exception sending mail: " + ose.getMessage());
        }
        logger.info("just sent email to " + alertEmail + ", from " + EmailEngine.getAdminEmail());
        if (successMsg == null) {
            successMsg = " ";
        }
        postSuccessMessage(successMsg, context);
    } catch (JobInterruptedException e) {
        logger.info("Job was cancelled by the user");
        exceptions = true;
    } catch (TransformerConfigurationException e) {
        sendErrorEmail(e.getMessage(), context, alertEmail);
        postErrorMessage(e.getMessage(), context);
        logger.error("Error executing extract", e);
        exceptions = true;
    } catch (FileNotFoundException e) {
        sendErrorEmail(e.getMessage(), context, alertEmail);
        postErrorMessage(e.getMessage(), context);
        logger.error("Error executing extract", e);
        exceptions = true;
    } catch (TransformerFactoryConfigurationError e) {
        sendErrorEmail(e.getMessage(), context, alertEmail);
        postErrorMessage(e.getMessage(), context);
        logger.error("Error executing extract", e);
        exceptions = true;
    } catch (TransformerException e) {
        sendErrorEmail(e.getMessage(), context, alertEmail);
        postErrorMessage(e.getMessage(), context);
        logger.error("Error executing extract", e);
        exceptions = true;
    } catch (Exception ee) {
        sendErrorEmail(ee.getMessage(), context, alertEmail);
        postErrorMessage(ee.getMessage(), context);
        logger.error("Error executing extract", ee);
        exceptions = true;
        if (null != dataMap.get("job_type") && ((String) dataMap.get("job_type")).equalsIgnoreCase("exportJob")) {
            TriggerBean triggerBean = new TriggerBean();
            triggerBean.setUserAccount(userBean);
            triggerBean.setFullName((String) dataMap.get(XsltTriggerService.JOB_NAME));
            auditEventDAO.createRowForExtractDataJobFailure(triggerBean);
        }
    } finally {
        if (in != null)
            try {
                in.close();
            } catch (IOException e) {
                logger.error("Error executing extract", e);
            }
        if (endFileStream != null)
            try {
                endFileStream.close();
            } catch (IOException e) {
                logger.error("Error executing extract", e);
            }
        if (exceptions) {
            logger.debug("EXCEPTIONS... EVEN TEHN DELETING OFF OLD FILES");
            String generalFileDir = dataMap.getString(XML_FILE_PATH);
            File oldFilesPath = new File(generalFileDir);
            if (oldFilesPath.isDirectory()) {
                markForDelete = Arrays.asList(oldFilesPath.listFiles());
            }
            logger.debug("deleting the old files reference from archive dataset");
            if (deleteOld) {
                deleteIntermFiles(markForDelete, "", doNotDeleteUntilExtract);
            }
        }
        if (datasetBean != null)
            resetArchiveDataset(datasetBean.getId());
        logger.info("Job " + context.getJobDetail().getDescription() + " finished.");
    }
}
Also used : Locale(java.util.Locale) DatasetBean(org.akaza.openclinica.bean.extract.DatasetBean) FileNotFoundException(java.io.FileNotFoundException) ExtractPropertyBean(org.akaza.openclinica.bean.extract.ExtractPropertyBean) JobDataMap(org.quartz.JobDataMap) TriggerBean(org.akaza.openclinica.bean.admin.TriggerBean) StreamResult(javax.xml.transform.stream.StreamResult) ProcessingFunction(org.akaza.openclinica.bean.service.ProcessingFunction) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) OpenClinicaSystemException(org.akaza.openclinica.exception.OpenClinicaSystemException) XMLFileFilter(org.akaza.openclinica.core.util.XMLFileFilter) LinkedList(java.util.LinkedList) ExtractBean(org.akaza.openclinica.bean.extract.ExtractBean) FileOutputStream(java.io.FileOutputStream) ResourceBundle(java.util.ResourceBundle) File(java.io.File) Transformer(javax.xml.transform.Transformer) TransformerConfigurationException(javax.xml.transform.TransformerConfigurationException) FilenameFilter(java.io.FilenameFilter) ZipEntry(java.util.zip.ZipEntry) Entry(java.util.Map.Entry) UserAccountBean(org.akaza.openclinica.bean.login.UserAccountBean) TransformerException(javax.xml.transform.TransformerException) ArchivedDatasetFileBean(org.akaza.openclinica.bean.extract.ArchivedDatasetFileBean) TransformerFactoryConfigurationError(javax.xml.transform.TransformerFactoryConfigurationError) StreamSource(javax.xml.transform.stream.StreamSource) FileInputStream(java.io.FileInputStream) IOException(java.io.IOException) FileNotFoundException(java.io.FileNotFoundException) OpenClinicaSystemException(org.akaza.openclinica.exception.OpenClinicaSystemException) TransformerException(javax.xml.transform.TransformerException) SchedulerException(org.quartz.SchedulerException) TransformerConfigurationException(javax.xml.transform.TransformerConfigurationException) IOException(java.io.IOException) ProcessingResultType(org.akaza.openclinica.bean.service.ProcessingResultType)

Example 13 with UserAccountBean

use of org.akaza.openclinica.bean.login.UserAccountBean in project OpenClinica by OpenClinica.

the class JobTriggerService method triggerJob.

public void triggerJob() {
    ResourceBundleProvider.updateLocale(new Locale("en_US"));
    ArrayList<RuleSetBean> ruleSets = ruleSetDao.findAllRunOnSchedules(true);
    for (RuleSetBean ruleSet : ruleSets) {
        if (ruleSet.getStatus().AVAILABLE != null && ruleSet.isRunSchedule()) {
            if (ruleSet.getItemId() != null) {
                // item Specific Rule
                System.out.println("*** Item Specific Rule ***");
                ArrayList<RuleSetBean> ruleSetBeans = new ArrayList<>();
                StudyBean currentStudy = (StudyBean) getStudyDao().findByPK(ruleSet.getStudyId());
                ResourceBundleProvider.updateLocale(Locale.getDefault());
                UserAccountBean ub = (UserAccountBean) getUserAccountDao().findByPK(1);
                ruleSetBeans.add(ruleSet);
                ruleSetService.runRulesInBulk(ruleSetBeans, false, currentStudy, ub, true);
            } else {
                // Event Specific Rule		
                System.out.println("*** Event Specific Rule ***");
                StudyEventChangeDetails studyEventChangeDetails = new StudyEventChangeDetails(true, true);
                ArrayList<RuleSetBean> ruleSetBeans = new ArrayList<>();
                ExpressionBean eBean = new ExpressionBean();
                eBean.setValue(ruleSet.getTarget().getValue() + ".A.B");
                ruleSet.setTarget(eBean);
                ruleSetBeans.add(ruleSet);
                ruleSetService.runRulesInBeanProperty(ruleSetBeans, 1, studyEventChangeDetails);
            }
        }
    }
}
Also used : Locale(java.util.Locale) StudyEventChangeDetails(org.akaza.openclinica.patterns.ocobserver.StudyEventChangeDetails) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) ArrayList(java.util.ArrayList) UserAccountBean(org.akaza.openclinica.bean.login.UserAccountBean) RuleSetBean(org.akaza.openclinica.domain.rule.RuleSetBean) ExpressionBean(org.akaza.openclinica.domain.rule.expression.ExpressionBean)

Example 14 with UserAccountBean

use of org.akaza.openclinica.bean.login.UserAccountBean in project OpenClinica by OpenClinica.

the class OdmImportServiceImpl method saveOrUpdateCrfAndFormLayouts.

private void saveOrUpdateCrfAndFormLayouts(String crfOid, List<OCodmComplexTypeDefinitionFormLayoutDef> formLayoutDefs, Form[] fmCrfs, UserAccount userAccount, Study study, String crfName) {
    DataBinder dataBinder = new DataBinder(new FormLayout());
    Errors errors = dataBinder.getBindingResult();
    StudyBean currentStudy = new StudyBean();
    currentStudy.setId(study.getStudyId());
    UserAccountBean ub = new UserAccountBean();
    ub.setId(userAccount.getUserId());
    ub.setActiveStudyId(currentStudy.getId());
    for (Form crf : fmCrfs) {
        if (crf.getOcoid().equals(crfOid)) {
            ExecuteIndividualCrfObject eicObj = new ExecuteIndividualCrfObject(crf, formLayoutDefs, errors, currentStudy, ub, true, null);
            xformService.executeIndividualCrf(eicObj);
        }
    }
}
Also used : FormLayout(org.akaza.openclinica.domain.datamap.FormLayout) Errors(org.springframework.validation.Errors) ExecuteIndividualCrfObject(org.akaza.openclinica.service.crfdata.ExecuteIndividualCrfObject) Form(org.akaza.openclinica.service.dto.Form) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) UserAccountBean(org.akaza.openclinica.bean.login.UserAccountBean) DataBinder(org.springframework.validation.DataBinder)

Example 15 with UserAccountBean

use of org.akaza.openclinica.bean.login.UserAccountBean in project OpenClinica by OpenClinica.

the class SubjectTransferValidator method validate.

public void validate(Object obj, Errors e) {
    SubjectTransferBean subjectTransferBean = (SubjectTransferBean) obj;
    StudyBean study = getStudyDAO().findByUniqueIdentifier(subjectTransferBean.getStudyOid());
    if (study == null) {
        e.reject("subjectTransferValidator.study_does_not_exist", new Object[] { subjectTransferBean.getStudyOid() }, "Study identifier you specified " + subjectTransferBean.getStudyOid() + " does not correspond to a valid study.");
        return;
    }
    UserAccountBean ua = subjectTransferBean.getOwner();
    StudyUserRoleBean role = ua.getRoleByStudy(study);
    if (role.getId() == 0 || role.getRole().equals(Role.MONITOR)) {
        e.reject("subjectTransferValidator.insufficient_permissions", "You do not have sufficient privileges to proceed with this operation.");
        return;
    }
    if (subjectTransferBean.getSiteIdentifier() != null) {
        study = getStudyDAO().findSiteByUniqueIdentifier(subjectTransferBean.getStudyOid(), subjectTransferBean.getSiteIdentifier());
    }
    subjectTransferBean.setStudy(study);
    if (study == null) {
        e.reject("subjectTransferValidator.site_does_not_exist", new Object[] { subjectTransferBean.getSiteIdentifier() }, "Site identifier you specified does not correspond to a valid site.");
        return;
    }
    int handleStudyId = study.getParentStudyId() > 0 ? study.getParentStudyId() : study.getId();
    StudyParameterValueBean studyParameter = getStudyParameterValueDAO().findByHandleAndStudy(handleStudyId, "subjectPersonIdRequired");
    String personId = subjectTransferBean.getPersonId();
    if ("required".equals(studyParameter.getValue()) && (personId == null || personId.length() < 1)) {
        e.reject("subjectTransferValidator.personId_required", new Object[] { study.getName() }, "personId is required for the study: " + study.getName());
        return;
    }
    if (personId != null && personId.length() > 255) {
        e.reject("subjectTransferValidator.personId_invalid_length", new Object[] { personId }, "personId: " + personId + " cannot be longer than 255 characters.");
        return;
    }
    String idSetting = "";
    StudyParameterValueBean subjectIdGenerationParameter = getStudyParameterValueDAO().findByHandleAndStudy(handleStudyId, "subjectIdGeneration");
    idSetting = subjectIdGenerationParameter.getValue();
    if (idSetting.equals("auto editable") || idSetting.equals("auto non-editable")) {
        int nextLabel = getStudySubjectDAO().findTheGreatestLabel() + 1;
        subjectTransferBean.setStudySubjectId(new Integer(nextLabel).toString());
    }
    String studySubjectId = subjectTransferBean.getStudySubjectId();
    if (studySubjectId == null || studySubjectId.length() < 1) {
        e.reject("subjectTransferValidator.studySubjectId_required");
        return;
    } else if (studySubjectId.length() > 30) {
        e.reject("subjectTransferValidator.studySubjectId_invalid_length", new Object[] { studySubjectId }, "studySubjectId: " + studySubjectId + " cannot be longer than 30 characters.");
        return;
    }
    String secondaryId = subjectTransferBean.getSecondaryId();
    if (secondaryId != null && secondaryId.length() > 30) {
        e.reject("subjectTransferValidator.secondaryId_invalid_length", new Object[] { secondaryId }, "secondaryId: " + secondaryId + " cannot be longer than 30 characters.");
        return;
    }
    String gender = subjectTransferBean.getGender() + "";
    studyParameter = getStudyParameterValueDAO().findByHandleAndStudy(handleStudyId, "genderRequired");
    if ("true".equals(studyParameter.getValue()) && (gender == null || gender.length() < 1)) {
        e.reject("subjectTransferValidator.gender_required", new Object[] { study.getName() }, "Gender is required for the study: " + study.getName());
        return;
    }
    if (!"m".equals(gender) && !"f".equals(gender)) {
        e.reject("subjectTransferValidator.gender_is_m_or_f");
        //e.reject("subjectTransferValidator.gender_required", new Object[] { study.getName() }, "Gender is required to be 'm' or 'f'");
        return;
    }
    Date dateOfBirth = subjectTransferBean.getDateOfBirth();
    String yearOfBirth = subjectTransferBean.getYearOfBirth();
    studyParameter = getStudyParameterValueDAO().findByHandleAndStudy(handleStudyId, "collectDob");
    if ("1".equals(studyParameter.getValue()) && (dateOfBirth == null)) {
        e.reject("subjectTransferValidator.dateOfBirth_required", new Object[] { study.getName() }, "Date of birth is required for the study " + study.getName());
        return;
    } else if ("2".equals(studyParameter.getValue()) && (yearOfBirth == null)) {
        e.reject("subjectTransferValidator.yearOfBirth_required", new Object[] { study.getName() }, "Year of birth is required for the study " + study.getName());
        return;
    } else if ("2".equals(studyParameter.getValue()) && (yearOfBirth != null)) {
        try {
            SimpleDateFormat sdf = new SimpleDateFormat("yyyy");
            subjectTransferBean.setDateOfBirth(sdf.parse(subjectTransferBean.getYearOfBirth()));
        } catch (ParseException xe) {
            e.reject("subjectTransferValidator.yearOfBirth_invalid", new Object[] { yearOfBirth }, "Year of birth: " + yearOfBirth + " is not valid");
            return;
        }
    }
    Date enrollmentDate = subjectTransferBean.getEnrollmentDate();
    if (enrollmentDate == null) {
        e.reject("subjectTransferValidator.enrollmentDate_required");
        return;
    } else {
        if ((new Date()).compareTo(enrollmentDate) < 0) {
            e.reject("subjectTransferValidator.enrollmentDate_should_be_in_past");
            return;
        }
    }
}
Also used : StudyParameterValueBean(org.akaza.openclinica.bean.service.StudyParameterValueBean) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) StudyUserRoleBean(org.akaza.openclinica.bean.login.StudyUserRoleBean) UserAccountBean(org.akaza.openclinica.bean.login.UserAccountBean) ParseException(java.text.ParseException) SubjectTransferBean(org.akaza.openclinica.bean.managestudy.SubjectTransferBean) SimpleDateFormat(java.text.SimpleDateFormat) Date(java.util.Date)

Aggregations

UserAccountBean (org.akaza.openclinica.bean.login.UserAccountBean)152 UserAccountDAO (org.akaza.openclinica.dao.login.UserAccountDAO)64 StudyBean (org.akaza.openclinica.bean.managestudy.StudyBean)56 ArrayList (java.util.ArrayList)52 HashMap (java.util.HashMap)38 StudyDAO (org.akaza.openclinica.dao.managestudy.StudyDAO)36 StudyUserRoleBean (org.akaza.openclinica.bean.login.StudyUserRoleBean)35 Date (java.util.Date)32 FormProcessor (org.akaza.openclinica.control.form.FormProcessor)32 Locale (java.util.Locale)30 StudySubjectBean (org.akaza.openclinica.bean.managestudy.StudySubjectBean)18 Iterator (java.util.Iterator)16 InsufficientPermissionException (org.akaza.openclinica.web.InsufficientPermissionException)16 ResponseEntity (org.springframework.http.ResponseEntity)16 EventCRFBean (org.akaza.openclinica.bean.submit.EventCRFBean)15 Validator (org.akaza.openclinica.control.form.Validator)12 RequestMapping (org.springframework.web.bind.annotation.RequestMapping)12 Role (org.akaza.openclinica.bean.core.Role)11 DiscrepancyNoteBean (org.akaza.openclinica.bean.managestudy.DiscrepancyNoteBean)10 StudyEventBean (org.akaza.openclinica.bean.managestudy.StudyEventBean)10