Examples with EventCRFBean org.akaza.openclinica.bean.submit.EventCRFBean used on opensource projects

Example 1 with EventCRFBean

use of org.akaza.openclinica.bean.submit.EventCRFBean in project OpenClinica by OpenClinica.

the class ExtractBean method debug.

/*
     * addStudyGroupData: each subject can have more than one Group, so we need
     * to create a list for each subject and check if the groupclasses are
     * there, and which group it is. tbh
     */
// public void addSubjectGroupData(Integer subjectGroupId,
// Integer subjectGroupClassId) {
// // DO NOT USE -- using another method, tbh
// }
/**
     * debug: takes in a event crf bean and spits out all its data. tbh
     */
public void debug(StudyEventBean seb) {
    java.lang.StringBuffer buf = new java.lang.StringBuffer();
    buf.append("***** ***** *****\n");
    buf.append("event crf count: " + seb.getEventCRFs().size() + " ");
    buf.append("study event bean location: " + seb.getLocation() + " ");
    buf.append("study event def id: " + seb.getStudyEventDefinitionId() + " ");
    buf.append("study event date started: " + seb.getDateStarted() + " ");
    buf.append("study event date ended: " + seb.getDateEnded() + " ");
    buf.append("study event status: " + seb.getStatus().getName() + " ");
    buf.append("***** ***** *****\n");
    logger.info(buf.toString());
    for (int i = 0; i < seb.getEventCRFs().size(); i++) {
        EventCRFBean check = (EventCRFBean) seb.getEventCRFs().get(i);
        debug(check);
    }
}

Example 2 with EventCRFBean

use of org.akaza.openclinica.bean.submit.EventCRFBean in project OpenClinica by OpenClinica.

the class ExtractBean method getEvent.

/**
     * Get the event correspodning to the provided study subject, SED and sample
     * ordinal.
     *
     * @param h
     *            An index into the array of subjects.
     * @param i
     *            An index into the array of SEDs.
     * @param j
     *            The sample ordinal.
     * @return The event correspodning to the provided study subject, SED and
     *         sample ordinal.
     */
private StudyEventBean getEvent(int h, int i, int j) {
    syncSubjectIndex(h);
    syncSEDIndex(i);
    String key = getStudyEventDataKey(currentSubject.getId(), currentDef.getId(), j);
    StudyEventBean seb = (StudyEventBean) eventData.get(key);
    if (seb == null) {
        // logger.info("dump of event data: "+eventData.toString());
        return new StudyEventBean();
    } else {
        // "+key);
        if (seb.getEventCRFs().size() > 0) {
            EventCRFBean ecbean = (EventCRFBean) seb.getEventCRFs().get(0);
        }
        // logger.info("int.name "+ecbean.getInterviewerName());
        return seb;
    }
}

Example 3 with EventCRFBean

use of org.akaza.openclinica.bean.submit.EventCRFBean in project OpenClinica by OpenClinica.

the class ExtractBean method addStudyEventDataOld.

// addStudyEventData
/*
     * addStudyEventData, a function which puts information about a
     * study-subject taking an event-crf into the ExtractBean's interface.
     */
public void addStudyEventDataOld(Integer studySubjectId, String studyEventDefinitionName, Integer studyEventDefinitionId, Integer sampleOrdinal, String studyEventLocation, Date studyEventStart, Date studyEventEnd, String crfVersionName, Integer crfVersionStatusId, Date dateInterviewed, String interviewerName, Date dateCompleted, Date dateValidateCompleted, Integer completionStatusId) {
    if (studySubjectId == null || studyEventDefinitionId == null || sampleOrdinal == null || studyEventLocation == null || studyEventStart == null) {
        return;
    }
    if (studyEventDefinitionId.intValue() <= 0 || studySubjectId.intValue() <= 0 || sampleOrdinal.intValue() <= 0) {
        return;
    }
    // YW 08-21-2007 << fetch start_time_flag and end_time_flag
    StudyEventDAO sedao = new StudyEventDAO(ds);
    StudyEventBean se = (StudyEventBean) sedao.findByStudySubjectIdAndDefinitionIdAndOrdinal(studySubjectId, studyEventDefinitionId, sampleOrdinal);
    // YW >>
    if (se == null) {
        se.setStatus(Status.INVALID);
    }
    StudyEventBean event = new StudyEventBean();
    EventCRFBean eventCRF = new EventCRFBean();
    event.setName(studyEventDefinitionName);
    event.setDateStarted(studyEventStart);
    event.setDateEnded(studyEventEnd);
    event.setLocation(studyEventLocation);
    event.setSampleOrdinal(sampleOrdinal.intValue());
    event.setStudyEventDefinitionId(studyEventDefinitionId.intValue());
    event.setStudySubjectId(studySubjectId.intValue());
    event.setStartTimeFlag(se.getStartTimeFlag());
    event.setEndTimeFlag(se.getEndTimeFlag());
    // below needs to be added, tbh
    event.setStatus(se.getStatus());
    event.setSubjectEventStatus(se.getSubjectEventStatus());
    event.setStage(se.getStage());
    logger.info("found stage: " + se.getStage().getName());
    event.setId(se.getId());
    // end tbh, 03/08
    //
    eventCRF.setCompletionStatusId(completionStatusId.intValue());
    eventCRF.setInterviewerName(interviewerName);
    eventCRF.setDateCompleted(dateCompleted);
    eventCRF.setDateValidateCompleted(dateValidateCompleted);
    // eventCRF.setCreatedDate();//same as interviewed date? NO
    eventCRF.setDateInterviewed(dateInterviewed);
    // eventCRF.setStatus(status); //this is the one that we want, tbh
    // EventCRFDAO ecrfdao = new EventCRFDAO(ds);
    // ArrayList events = ecrfdao.findAllByStudyEvent(se);
    CRFVersionBean crfVersion = new CRFVersionBean();
    crfVersion.setName(crfVersionName);
    crfVersion.setStatus(Status.get(crfVersionStatusId.intValue()));
    crfVersion.setStatusId(crfVersionStatusId.intValue());
    eventCRF.setCrfVersion(crfVersion);
    // logger.info();
    ArrayList events = new ArrayList();
    events.add(eventCRF);
    // logger.info("///adding an event CRF..."
    // + eventCRF.getInterviewerName());
    // hmm, one to one relationship?
    event.setEventCRFs(events);
    // guard clause to see if it's in there already?
    // not rly, the above is only used in auditlogging
    // could fit in crf and crf version ids here, though
    // FIXME def not one to one relationship, tbh, 03.08
    String key = getStudyEventDataKey(studySubjectId.intValue(), studyEventDefinitionId.intValue(), sampleOrdinal.intValue());
    if (eventData == null) {
        eventData = new HashMap();
    }
    StudyEventBean checkEvent = (StudyEventBean) eventData.get(key);
    if (checkEvent == null) {
        eventData.put(key, event);
        logger.info("###just CREATED key: " + key + " event: " + event.getName() + " int.name: " + eventCRF.getInterviewerName());
    } else {
    // ArrayList eventCRFs = checkEvent.getEventCRFs();
    // eventCRFs.add(eventCRF);
    // checkEvent.setEventCRFs(eventCRFs);
    // eventData.put(key, checkEvent);
    // logger.info("count of eventcrfs "+eventCRFs.size());
    // logger.info("other things about the event crf: int.name
    // "+eventCRF.getInterviewerName()+" comp status id
    // "+eventCRF.getCompletionStatusId()+" version name
    // "+eventCRF.getCrfVersion().getName());
    // logger.info("###just UPDATED key: "+key+" event:
    // "+event.getName()+" int.name: "+eventCRF.getInterviewerName());
    }
// the problem: we want to order by start date
// but hashmaps are by their very nature hard to order
// and there is no contigous start date that we can sort on, i.e. we
// only
// look at one at a time.
}

Example 4 with EventCRFBean

use of org.akaza.openclinica.bean.submit.EventCRFBean in project OpenClinica by OpenClinica.

the class UnlockEventDefinitionServlet method processRequest.

@Override
public void processRequest() throws Exception {
    String idString = request.getParameter("id");
    int defId = Integer.valueOf(idString.trim()).intValue();
    StudyEventDefinitionDAO sdao = new StudyEventDefinitionDAO(sm.getDataSource());
    StudyEventDefinitionBean sed = (StudyEventDefinitionBean) sdao.findByPK(defId);
    // find all CRFs
    EventDefinitionCRFDAO edao = new EventDefinitionCRFDAO(sm.getDataSource());
    ArrayList eventDefinitionCRFs = (ArrayList) edao.findAllByDefinition(defId);
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    for (int i = 0; i < eventDefinitionCRFs.size(); i++) {
        EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
        ArrayList versions = (ArrayList) cvdao.findAllByCRF(edc.getCrfId());
        edc.setVersions(versions);
        CRFBean crf = (CRFBean) cdao.findByPK(edc.getCrfId());
        edc.setCrfName(crf.getName());
    }
    // finds all events
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    ArrayList events = (ArrayList) sedao.findAllByDefinition(sed.getId());
    String action = request.getParameter("action");
    if (StringUtil.isBlank(idString)) {
        addPageMessage(respage.getString("please_choose_a_SED_to_unlock"));
        forwardPage(Page.LIST_DEFINITION_SERVLET);
    } else {
        if ("confirm".equalsIgnoreCase(action)) {
            if (!sed.getStatus().equals(Status.LOCKED)) {
                addPageMessage(respage.getString("this_SED_cannot_be_unlocked") + " " + respage.getString("please_contact_sysadmin_for_more_information"));
                forwardPage(Page.LIST_DEFINITION_SERVLET);
                return;
            }
            request.setAttribute("definitionToUnlock", sed);
            request.setAttribute("eventDefinitionCRFs", eventDefinitionCRFs);
            request.setAttribute("events", events);
            forwardPage(Page.UNLOCK_DEFINITION);
        } else {
            logger.info("submit to lock the definition");
            // unlock definition
            sed.setStatus(Status.AVAILABLE);
            sed.setUpdater(ub);
            sed.setUpdatedDate(new Date());
            sdao.update(sed);
            // lock all crfs
            for (int j = 0; j < eventDefinitionCRFs.size(); j++) {
                EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(j);
                edc.setStatus(Status.AVAILABLE);
                edc.setUpdater(ub);
                edc.setUpdatedDate(new Date());
                edao.update(edc);
            }
            // unlock all events
            EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
            for (int j = 0; j < events.size(); j++) {
                StudyEventBean event = (StudyEventBean) events.get(j);
                event.setStatus(Status.AVAILABLE);
                event.setUpdater(ub);
                event.setUpdatedDate(new Date());
                sedao.update(event);
                ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
                // unlock all the item data
                ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
                for (int k = 0; k < eventCRFs.size(); k++) {
                    EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(k);
                    eventCRF.setStatus(Status.AVAILABLE);
                    eventCRF.setUpdater(ub);
                    eventCRF.setUpdatedDate(new Date());
                    ecdao.update(eventCRF);
                    ArrayList itemDatas = iddao.findAllByEventCRFId(eventCRF.getId());
                    for (int a = 0; a < itemDatas.size(); a++) {
                        ItemDataBean item = (ItemDataBean) itemDatas.get(a);
                        item.setStatus(Status.AVAILABLE);
                        item.setUpdater(ub);
                        item.setUpdatedDate(new Date());
                        iddao.update(item);
                    }
                }
            }
            String emailBody = respage.getString("the_SED") + " " + sed.getName() + respage.getString("has_been_unlocked_for_the_study") + " " + currentStudy.getName() + ". " + respage.getString("subject_event_data_is_as_it_was_before");
            addPageMessage(emailBody);
            sendEmail(emailBody);
            forwardPage(Page.LIST_DEFINITION_SERVLET);
        }
    }
}

Example 5 with EventCRFBean

use of org.akaza.openclinica.bean.submit.EventCRFBean in project OpenClinica by OpenClinica.

the class ViewEventCRFContentServlet method processRequest.

@Override
public void processRequest() throws Exception {
    FormProcessor fp = new FormProcessor(request);
    int eventCRFId = fp.getInt("ecId", true);
    int studySubId = fp.getInt("id", true);
    int eventId = fp.getInt("eventId", true);
    if (eventCRFId == 0) {
        addPageMessage(respage.getString("please_choose_an_event_CRF_to_view"));
        forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET);
        return;
    }
    StudyEventBean seb = getStudyEvent(eventId);
    StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
    StudySubjectBean studySub = (StudySubjectBean) subdao.findByPK(studySubId);
    request.setAttribute("studySub", studySub);
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    EventCRFBean eventCRF = (EventCRFBean) ecdao.findByPK(eventCRFId);
    DisplayTableOfContentsBean displayBean = TableOfContentsServlet.getDisplayBean(eventCRF, sm.getDataSource(), currentStudy);
    request.setAttribute("toc", displayBean);
    request.getSession().setAttribute(BEAN_STUDY_EVENT, seb);
    forwardPage(Page.VIEW_EVENT_CRF_CONTENT);
}