Examples with EventDefinitionCRFBean org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean used on opensource projects

Example 1 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class StudySubjectServiceImpl method getUncompletedCRFs.

private ArrayList<DisplayEventDefinitionCRFBean> getUncompletedCRFs(List eventDefinitionCRFs, List eventCRFs, SubjectEventStatus status, Set<Integer> nonEmptyEventCrf, Map<Integer, FormLayoutBean> formLayoutById, Map<Integer, CRFBean> crfById) {
    int i;
    HashMap<Integer, Boolean> completed = new HashMap<Integer, Boolean>();
    HashMap<Integer, EventCRFBean> startedButIncompleted = new HashMap<Integer, EventCRFBean>();
    ArrayList<DisplayEventDefinitionCRFBean> answer = new ArrayList<DisplayEventDefinitionCRFBean>();
    for (i = 0; i < eventDefinitionCRFs.size(); i++) {
        EventDefinitionCRFBean edcrf = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
        completed.put(new Integer(edcrf.getCrfId()), Boolean.FALSE);
        startedButIncompleted.put(new Integer(edcrf.getCrfId()), new EventCRFBean());
    }
    for (i = 0; i < eventCRFs.size(); i++) {
        EventCRFBean ecrf = (EventCRFBean) eventCRFs.get(i);
        int crfId = formLayoutById.get(ecrf.getFormLayoutId()).getCrfId();
        if (nonEmptyEventCrf.contains(ecrf.getId())) {
            // this crf has data
            // already
            completed.put(new Integer(crfId), Boolean.TRUE);
        } else {
            // event crf got created, but no data entered
            startedButIncompleted.put(new Integer(crfId), ecrf);
        }
    }
    // TODO possible relation to 1689 here, tbh
    for (i = 0; i < eventDefinitionCRFs.size(); i++) {
        DisplayEventDefinitionCRFBean dedc = new DisplayEventDefinitionCRFBean();
        EventDefinitionCRFBean edcrf = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
        // available (i.e., not removed)
        if (edcrf.getStatus().equals(Status.AVAILABLE)) {
            dedc.setEdc(edcrf);
            // below added tbh, 112007 to fix bug 1943
            if (status.equals(SubjectEventStatus.LOCKED)) {
                dedc.setStatus(Status.LOCKED);
            }
            Boolean b = completed.get(new Integer(edcrf.getCrfId()));
            EventCRFBean ev = startedButIncompleted.get(new Integer(edcrf.getCrfId()));
            if (b == null || !b.booleanValue()) {
                dedc.setEventCRF(ev);
                answer.add(dedc);
            }
        }
    }
    return answer;
}

Example 2 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class EventDefinitionCrfTagDAO method findAll.

@Override
public Collection findAll() {
    this.setTypesExpected();
    ArrayList alist = this.select(digester.getQuery("findAll"));
    ArrayList al = new ArrayList();
    Iterator it = alist.iterator();
    while (it.hasNext()) {
        EventDefinitionCRFBean eb = (EventDefinitionCRFBean) this.getEntityFromHashMap((HashMap) it.next());
        al.add(eb);
    }
    return al;
}

Example 3 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class EventDefinitionCRFDAO method findForStudyByStudyEventIdAndFormLayoutId.

public EventDefinitionCRFBean findForStudyByStudyEventIdAndFormLayoutId(int studyEventId, int formLayoutId) {
    EventDefinitionCRFBean answer = new EventDefinitionCRFBean();
    this.setTypesExpected();
    HashMap variables = new HashMap();
    variables.put(new Integer(1), new Integer(studyEventId));
    variables.put(new Integer(2), new Integer(formLayoutId));
    String sql = digester.getQuery("findForStudyByStudyEventIdAndFormLayoutId");
    ArrayList alist = this.select(sql, variables);
    Iterator it = alist.iterator();
    while (it.hasNext()) {
        answer = (EventDefinitionCRFBean) this.getEntityFromHashMap((HashMap) it.next());
    }
    return answer;
}

Example 4 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class PrintAllEventCRFServlet method processRequest.

@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
    FormProcessor fp = new FormProcessor(request);
    SessionManager sm = (SessionManager) request.getSession().getAttribute("sm");
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    ArrayList<SectionBean> allSectionBeans;
    // The PrintDataEntry servlet handles this parameter
    boolean isSubmitted = false;
    StudyEventDefinitionDAO sedao = new StudyEventDefinitionDAO(sm.getDataSource());
    EventDefinitionCRFDAO edao = new EventDefinitionCRFDAO(sm.getDataSource());
    EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
    StudyDAO studyDao = new StudyDAO(sm.getDataSource());
    StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
    ArrayList<StudyEventDefinitionBean> seds = new ArrayList<StudyEventDefinitionBean>();
    seds = sedao.findAllByStudy(currentStudy);
    // ArrayList eventDefinitionCRFs = (ArrayList) edao.findAllByStudy(site);
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    ArrayList<EventDefinitionCRFBean> edcs = new ArrayList();
    for (StudyEventDefinitionBean sed : seds) {
        int defId = sed.getId();
        edcs.addAll(edcdao.findAllByDefinition(currentStudy, defId));
    }
    Map eventDefinitionDefaultVersions = new LinkedHashMap();
    for (int i = 0; i < edcs.size(); i++) {
        EventDefinitionCRFBean edc = edcs.get(i);
        ArrayList versions = (ArrayList) cvdao.findAllByCRF(edc.getCrfId());
        edc.setVersions(versions);
        CRFBean crf = (CRFBean) cdao.findByPK(edc.getCrfId());
        // edc.setCrfLabel(crf.getLabel());
        edc.setCrfName(crf.getName());
        // to show/hide edit action on jsp page
        if (crf.getStatus().equals(Status.AVAILABLE)) {
            edc.setOwner(crf.getOwner());
        }
        CRFVersionBean defaultVersion = (CRFVersionBean) cvdao.findByPK(edc.getDefaultVersionId());
        StudyEventDefinitionBean studyEventDefinitionBean = (StudyEventDefinitionBean) sedao.findByPK(edc.getStudyEventDefinitionId());
        edc.setDefaultVersionName(defaultVersion.getName());
        if (defaultVersion.getStatus().isAvailable()) {
            List list = (ArrayList) eventDefinitionDefaultVersions.get(studyEventDefinitionBean);
            if (list == null)
                list = new ArrayList();
            list.add(defaultVersion);
            eventDefinitionDefaultVersions.put(studyEventDefinitionBean, list);
        }
    }
    // Whether IE6 or IE7 is involved
    String isIE = fp.getString("ie");
    if ("y".equalsIgnoreCase(isIE)) {
        request.setAttribute("isInternetExplorer", "true");
    }
    SectionDAO sdao = new SectionDAO(sm.getDataSource());
    CRFVersionDAO crfVersionDAO = new CRFVersionDAO(sm.getDataSource());
    CRFDAO crfDao = new CRFDAO(sm.getDataSource());
    Map sedCrfBeans = null;
    for (Iterator it = eventDefinitionDefaultVersions.keySet().iterator(); it.hasNext(); ) {
        if (sedCrfBeans == null)
            sedCrfBeans = new LinkedHashMap();
        StudyEventDefinitionBean sedBean = (StudyEventDefinitionBean) it.next();
        List crfVersions = (ArrayList) eventDefinitionDefaultVersions.get(sedBean);
        for (Iterator crfIt = crfVersions.iterator(); crfIt.hasNext(); ) {
            CRFVersionBean crfVersionBean = (CRFVersionBean) crfIt.next();
            allSectionBeans = new ArrayList<SectionBean>();
            ArrayList sectionBeans = new ArrayList();
            ItemGroupDAO itemGroupDao = new ItemGroupDAO(sm.getDataSource());
            // Find truely grouped tables, not groups with a name of 'Ungrouped'
            List<ItemGroupBean> itemGroupBeans = itemGroupDao.findOnlyGroupsByCRFVersionID(crfVersionBean.getId());
            CRFBean crfBean = crfDao.findByVersionId(crfVersionBean.getId());
            if (itemGroupBeans.size() > 0) {
                // get a DisplaySectionBean for each section of the CRF, sort
                // them, then
                // dispatch the request to a print JSP. The constructor for this
                // handler takes
                // a boolean value depending on whether data is involved or not
                // ('false' in terms of this
                // servlet; see PrintDataEntryServlet).
                DisplaySectionBeanHandler handler = new DisplaySectionBeanHandler(false, getDataSource(), getServletContext());
                handler.setCrfVersionId(crfVersionBean.getId());
                // handler.setEventCRFId(eventCRFId);
                List<DisplaySectionBean> displaySectionBeans = handler.getDisplaySectionBeans();
                request.setAttribute("listOfDisplaySectionBeans", displaySectionBeans);
                // Make available the CRF names and versions for
                // the web page's header
                CRFVersionBean crfverBean = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
                request.setAttribute("crfVersionBean", crfverBean);
                request.setAttribute("crfBean", crfBean);
                // Set an attribute signaling that data is not involved
                request.setAttribute("dataInvolved", "false");
                PrintCRFBean printCrfBean = new PrintCRFBean();
                printCrfBean.setDisplaySectionBeans(displaySectionBeans);
                printCrfBean.setCrfVersionBean(crfVersionBean);
                printCrfBean.setCrfBean(crfBean);
                printCrfBean.setEventCrfBean(ecb);
                printCrfBean.setGrouped(true);
                List list = (ArrayList) sedCrfBeans.get(sedBean);
                if (list == null)
                    list = new ArrayList();
                list.add(printCrfBean);
                sedCrfBeans.put(sedBean, list);
                continue;
            }
            ecb = new EventCRFBean();
            ecb.setCRFVersionId(crfVersionBean.getId());
            CRFVersionBean version = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
            ArrayList sects = (ArrayList) sdao.findByVersionId(version.getId());
            for (int i = 0; i < sects.size(); i++) {
                sb = (SectionBean) sects.get(i);
                // super.sb = sb;
                int sectId = sb.getId();
                if (sectId > 0) {
                    allSectionBeans.add((SectionBean) sdao.findByPK(sectId));
                }
            }
            request.setAttribute(INPUT_EVENT_CRF, ecb);
            request.setAttribute(SECTION_BEAN, sb);
            request.setAttribute(ALL_SECTION_BEANS, allSectionBeans);
            sectionBeans = super.getAllDisplayBeans(request);
            DisplaySectionBean dsb = super.getDisplayBean(false, false, request, isSubmitted);
            PrintCRFBean printCrfBean = new PrintCRFBean();
            printCrfBean.setAllSections(sectionBeans);
            printCrfBean.setDisplaySectionBean(dsb);
            printCrfBean.setEventCrfBean(ecb);
            printCrfBean.setCrfVersionBean(crfVersionBean);
            printCrfBean.setCrfBean(crfBean);
            printCrfBean.setGrouped(false);
            List list = (ArrayList) sedCrfBeans.get(sedBean);
            if (list == null)
                list = new ArrayList();
            list.add(printCrfBean);
            sedCrfBeans.put(sedBean, list);
        }
    }
    request.setAttribute("sedCrfBeans", sedCrfBeans);
    request.setAttribute("studyName", currentStudy.getName());
    forwardPage(Page.VIEW_ALL_DEFAULT_CRF_VERSIONS_PRINT, request, response);
}

Example 5 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class ListEventDefinitionServlet method processRequest.

/**
 * Processes the request
 */
@Override
public void processRequest() throws Exception {
    StudyEventDefinitionDAO edao = new StudyEventDefinitionDAO(sm.getDataSource());
    UserAccountDAO sdao = new UserAccountDAO(sm.getDataSource());
    EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
    CRFDAO crfDao = new CRFDAO(sm.getDataSource());
    CRFVersionDAO crfVersionDao = new CRFVersionDAO(sm.getDataSource());
    ArrayList seds = edao.findAllByStudy(currentStudy);
    // request.setAttribute("seds", seds);
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
    for (int i = 0; i < seds.size(); i++) {
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seds.get(i);
        Collection eventDefinitionCRFlist = edcdao.findAllParentsByDefinition(sed.getId());
        Map crfWithDefaultVersion = new LinkedHashMap();
        for (Iterator it = eventDefinitionCRFlist.iterator(); it.hasNext(); ) {
            EventDefinitionCRFBean edcBean = (EventDefinitionCRFBean) it.next();
            CRFBean crfBean = (CRFBean) crfDao.findByPK(edcBean.getCrfId());
            CRFVersionBean crfVersionBean = (CRFVersionBean) crfVersionDao.findByPK(edcBean.getDefaultVersionId());
            logger.info("ED[" + sed.getName() + "]crf[" + crfBean.getName() + "]dv[" + crfVersionBean.getName() + "]");
            crfWithDefaultVersion.put(crfBean.getName(), crfVersionBean.getName());
        }
        sed.setCrfsWithDefaultVersion(crfWithDefaultVersion);
        logger.info("CRF size [" + sed.getCrfs().size() + "]");
        if (sed.getUpdater().getId() == 0) {
            sed.setUpdater(sed.getOwner());
            sed.setUpdatedDate(sed.getCreatedDate());
        }
        if (isPopulated(sed, sedao)) {
            sed.setPopulated(true);
        }
    }
    FormProcessor fp = new FormProcessor(request);
    EntityBeanTable table = fp.getEntityBeanTable();
    ArrayList allStudyRows = StudyEventDefinitionRow.generateRowsFromBeans(seds);
    String[] columns = { resword.getString("order"), resword.getString("name"), resword.getString("OID"), resword.getString("repeating"), resword.getString("type"), resword.getString("category"), resword.getString("populated"), resword.getString("date_created"), resword.getString("date_updated"), resword.getString("CRFs"), resword.getString("default_version"), resword.getString("actions") };
    table.setColumns(new ArrayList(Arrays.asList(columns)));
    // >> tbh #4169 09/2009
    table.hideColumnLink(2);
    table.hideColumnLink(3);
    table.hideColumnLink(4);
    table.hideColumnLink(6);
    table.hideColumnLink(7);
    table.hideColumnLink(8);
    table.hideColumnLink(9);
    // crfs, tbh
    table.hideColumnLink(10);
    table.hideColumnLink(11);
    table.hideColumnLink(12);
    // << tbh 09/2009
    table.setQuery("ListEventDefinition", new HashMap());
    // if (!currentStudy.getStatus().isLocked()) {
    // table.addLink(resworkflow.getString(
    // "create_a_new_study_event_definition"), "DefineStudyEvent");
    // }
    table.setRows(allStudyRows);
    table.setPaginated(false);
    table.computeDisplay();
    request.setAttribute("table", table);
    request.setAttribute("defSize", new Integer(seds.size()));
    if (request.getParameter("read") != null && request.getParameter("read").equals("true")) {
        request.setAttribute("readOnly", true);
    }
    forwardPage(Page.STUDY_EVENT_DEFINITION_LIST);
}