Examples with GenerateExtractFileService org.akaza.openclinica.service.extract.GenerateExtractFileService used on opensource projects

Example 1 with GenerateExtractFileService

use of org.akaza.openclinica.service.extract.GenerateExtractFileService in project OpenClinica by OpenClinica.

the class ExampleSpringJob method executeInternal.

@Override
protected void executeInternal(JobExecutionContext context) throws JobExecutionException {
    // need to generate a Locale so that user beans and other things will
    // generate normally
    Locale locale = new Locale("en-US");
    ResourceBundleProvider.updateLocale(locale);
    ResourceBundle pageMessages = ResourceBundleProvider.getPageMessagesBundle();
    // logger.debug("--");
    // logger.debug("-- executing a job " + message + " at " + new
    // java.util.Date().toString());
    JobDataMap dataMap = context.getMergedJobDataMap();
    SimpleTrigger trigger = (SimpleTrigger) context.getTrigger();
    try {
        ApplicationContext appContext = (ApplicationContext) context.getScheduler().getContext().get("applicationContext");
        String studySubjectNumber = ((CoreResources) appContext.getBean("coreResources")).getField("extract.number");
        coreResources = (CoreResources) appContext.getBean("coreResources");
        ruleSetRuleDao = (RuleSetRuleDao) appContext.getBean("ruleSetRuleDao");
        dataSource = (DataSource) appContext.getBean("dataSource");
        mailSender = (OpenClinicaMailSender) appContext.getBean("openClinicaMailSender");
        AuditEventDAO auditEventDAO = new AuditEventDAO(dataSource);
        // Scheduler scheduler = context.getScheduler();
        // JobDetail detail = context.getJobDetail();
        // jobDetailBean = (JobDetailBean) detail;
        /*
             * data map here should coincide with the job data map found in
             * CreateJobExportServlet, with the following code: jobDataMap = new
             * JobDataMap(); jobDataMap.put(DATASET_ID, datasetId);
             * jobDataMap.put(PERIOD, period); jobDataMap.put(EMAIL, email);
             * jobDataMap.put(TAB, tab); jobDataMap.put(CDISC, cdisc);
             * jobDataMap.put(SPSS, spss);
             */
        String alertEmail = dataMap.getString(EMAIL);
        String localeStr = dataMap.getString(LOCALE);
        if (localeStr != null) {
            locale = new Locale(localeStr);
            ResourceBundleProvider.updateLocale(locale);
            pageMessages = ResourceBundleProvider.getPageMessagesBundle();
        }
        int dsId = dataMap.getInt(DATASET_ID);
        String tab = dataMap.getString(TAB);
        String cdisc = dataMap.getString(CDISC);
        String cdisc12 = dataMap.getString(CDISC12);
        if (cdisc12 == null) {
            cdisc12 = "0";
        }
        String cdisc13 = dataMap.getString(CDISC13);
        if (cdisc13 == null) {
            cdisc13 = "0";
        }
        String cdisc13oc = dataMap.getString(CDISC13OC);
        if (cdisc13oc == null) {
            cdisc13oc = "0";
        }
        String spss = dataMap.getString(SPSS);
        int userId = dataMap.getInt(USER_ID);
        int studyId = dataMap.getInt(STUDY_ID);
        // String datasetId = dataMap.getString(DATASET_ID);
        // int dsId = new Integer(datasetId).intValue();
        // String userAcctId = dataMap.getString(USER_ID);
        // int userId = new Integer(userAcctId).intValue();
        // why the flip-flop? if one property is set to 'true' we can
        // see jobs in another screen but all properties have to be
        // strings
        logger.debug("-- found the job: " + dsId + " dataset id");
        // for (Iterator it = dataMap.entrySet().iterator(); it.hasNext();)
        // {
        // java.util.Map.Entry entry = (java.util.Map.Entry) it.next();
        // Object key = entry.getKey();
        // Object value = entry.getValue();
        // // logger.debug("-- found datamap property: " + key.toString() +
        // // " : " + value.toString());
        // }
        HashMap fileName = new HashMap<String, Integer>();
        if (dsId > 0) {
            // trying to not throw an error if there's no dataset id
            DatasetDAO dsdao = new DatasetDAO(dataSource);
            DatasetBean datasetBean = (DatasetBean) dsdao.findByPK(dsId);
            StudyDAO studyDao = new StudyDAO(dataSource);
            UserAccountDAO userAccountDAO = new UserAccountDAO(dataSource);
            // hmm, three lines in the if block DRY?
            String generalFileDir = "";
            String generalFileDirCopy = "";
            String exportFilePath = SQLInitServlet.getField("exportFilePath");
            String pattern = "yyyy" + File.separator + "MM" + File.separator + "dd" + File.separator + "HHmmssSSS" + File.separator;
            SimpleDateFormat sdfDir = new SimpleDateFormat(pattern);
            generalFileDir = DATASET_DIR + datasetBean.getId() + File.separator + sdfDir.format(new java.util.Date());
            if (!"".equals(exportFilePath)) {
                generalFileDirCopy = SQLInitServlet.getField("filePath") + exportFilePath + File.separator;
            }
            // logger.debug("-- created the following dir: " +
            // generalFileDir);
            long sysTimeBegin = System.currentTimeMillis();
            // set up the user bean here, tbh
            // logger.debug("-- gen tab file 00");
            userBean = (UserAccountBean) userAccountDAO.findByPK(userId);
            // needs to also be captured by the servlet, tbh
            // logger.debug("-- gen tab file 00");
            generateFileService = new GenerateExtractFileService(dataSource, coreResources, ruleSetRuleDao);
            // logger.debug("-- gen tab file 00");
            // tbh #5796 - covers a bug when the user changes studies, 10/2010
            StudyBean activeStudy = (StudyBean) studyDao.findByPK(studyId);
            StudyBean parentStudy = new StudyBean();
            logger.debug("active study: " + studyId + " parent study: " + activeStudy.getParentStudyId());
            if (activeStudy.getParentStudyId() > 0) {
                // StudyDAO sdao = new StudyDAO(sm.getDataSource());
                parentStudy = (StudyBean) studyDao.findByPK(activeStudy.getParentStudyId());
            } else {
                parentStudy = activeStudy;
            // covers a bug in tab file creation, tbh 01/2009
            }
            logger.debug("-- found extract bean ");
            ExtractBean eb = generateFileService.generateExtractBean(datasetBean, activeStudy, parentStudy);
            MessageFormat mf = new MessageFormat("");
            StringBuffer message = new StringBuffer();
            StringBuffer auditMessage = new StringBuffer();
            // use resource bundle page messages to generate the email, tbh
            // 02/2009
            // message.append(pageMessages.getString("html_email_header_1")
            // + " " + alertEmail +
            // pageMessages.getString("html_email_header_2") + "<br/>");
            message.append("<p>" + pageMessages.getString("email_header_1") + " " + EmailEngine.getAdminEmail() + " " + pageMessages.getString("email_header_2") + " Job Execution " + pageMessages.getString("email_header_3") + "</p>");
            message.append("<P>Dataset: " + datasetBean.getName() + "</P>");
            message.append("<P>Study: " + activeStudy.getName() + "</P>");
            message.append("<p>" + pageMessages.getString("html_email_body_1") + datasetBean.getName() + pageMessages.getString("html_email_body_2") + SQLInitServlet.getField("sysURL") + pageMessages.getString("html_email_body_3") + "</p>");
            // logger.debug("-- gen tab file 00");
            if ("1".equals(tab)) {
                logger.debug("-- gen tab file 01");
                fileName = generateFileService.createTabFile(eb, sysTimeBegin, generalFileDir, datasetBean, activeStudy.getId(), parentStudy.getId(), generalFileDirCopy, userBean);
                message.append("<p>" + pageMessages.getString("html_email_body_4") + " " + getFileNameStr(fileName) + pageMessages.getString("html_email_body_4_5") + SQLInitServlet.getField("sysURL.base") + "AccessFile?fileId=" + getFileIdInt(fileName) + pageMessages.getString("html_email_body_3") + "</p>");
                // MessageFormat mf = new MessageFormat("");
                // mf.applyPattern(pageMessages.getString(
                // "you_can_access_tab_delimited"));
                // Object[] arguments = { getFileIdInt(fileName) };
                // auditMessage.append(mf.format(arguments));
                // auditMessage.append(
                // "You can access your tab-delimited file <a href='AccessFile?fileId="
                // + getFileIdInt(fileName) + "'>here</a>.<br/>");
                auditMessage.append(pageMessages.getString("you_can_access_tab_delimited") + getFileIdInt(fileName) + pageMessages.getString("access_end"));
            }
            if ("1".equals(cdisc)) {
                String odmVersion = "oc1.2";
                fileName = generateFileService.createODMFile(odmVersion, sysTimeBegin, generalFileDir, datasetBean, activeStudy, generalFileDirCopy, eb, activeStudy.getId(), parentStudy.getId(), studySubjectNumber, true, true, true, null, userBean);
                logger.debug("-- gen odm file");
                message.append("<p>" + pageMessages.getString("html_email_body_4") + " " + getFileNameStr(fileName) + pageMessages.getString("html_email_body_4_5") + SQLInitServlet.getField("sysURL.base") + "AccessFile?fileId=" + getFileIdInt(fileName) + pageMessages.getString("html_email_body_3") + "</p>");
                // MessageFormat mf = new MessageFormat("");
                // mf.applyPattern(pageMessages.getString(
                // "you_can_access_odm_12"));
                // Object[] arguments = { getFileIdInt(fileName) };
                // auditMessage.append(mf.format(arguments));
                // auditMessage.append(
                // "You can access your ODM 1.2 w/OpenClinica Extension XML file <a href='AccessFile?fileId="
                // + getFileIdInt(fileName)
                // + "'>here</a>.<br/>");
                auditMessage.append(pageMessages.getString("you_can_access_odm_12") + getFileIdInt(fileName) + pageMessages.getString("access_end"));
            }
            if ("1".equals(cdisc12)) {
                String odmVersion = "1.2";
                fileName = generateFileService.createODMFile(odmVersion, sysTimeBegin, generalFileDir, datasetBean, activeStudy, generalFileDirCopy, eb, activeStudy.getId(), parentStudy.getId(), studySubjectNumber, true, true, true, null, userBean);
                logger.debug("-- gen odm file 1.2 default");
                message.append("<p>" + pageMessages.getString("html_email_body_4") + " " + getFileNameStr(fileName) + pageMessages.getString("html_email_body_4_5") + SQLInitServlet.getField("sysURL.base") + "AccessFile?fileId=" + getFileIdInt(fileName) + pageMessages.getString("html_email_body_3") + "</p>");
                // mf.applyPattern(pageMessages.getString(
                // "you_can_access_odm_12_xml"));
                // Object[] arguments = { getFileIdInt(fileName) };
                // auditMessage.append(mf.format(arguments));
                // // auditMessage.append(
                // "You can access your ODM 1.2 XML file <a href='AccessFile?fileId="
                // + getFileIdInt(fileName) + "'>here</a>.<br/>");
                auditMessage.append(pageMessages.getString("you_can_access_odm_12_xml") + getFileIdInt(fileName) + pageMessages.getString("access_end"));
            }
            if ("1".equals(cdisc13)) {
                String odmVersion = "1.3";
                fileName = generateFileService.createODMFile(odmVersion, sysTimeBegin, generalFileDir, datasetBean, activeStudy, generalFileDirCopy, eb, activeStudy.getId(), parentStudy.getId(), studySubjectNumber, true, true, true, null, userBean);
                logger.debug("-- gen odm file 1.3");
                message.append("<p>" + pageMessages.getString("html_email_body_4") + " " + getFileNameStr(fileName) + pageMessages.getString("html_email_body_4_5") + SQLInitServlet.getField("sysURL.base") + "AccessFile?fileId=" + getFileIdInt(fileName) + pageMessages.getString("html_email_body_3") + "</p>");
                // MessageFormat mf = new MessageFormat("");
                // mf.applyPattern(pageMessages.getString(
                // "you_can_access_odm_13"));
                // Object[] arguments = { getFileIdInt(fileName) };
                // auditMessage.append(mf.format(arguments));
                // auditMessage.append(
                // "You can access your ODM 1.3 XML file <a href='AccessFile?fileId="
                // + getFileIdInt(fileName) + "'>here</a>.<br/>");
                auditMessage.append(pageMessages.getString("you_can_access_odm_13") + getFileIdInt(fileName) + pageMessages.getString("access_end"));
            }
            if ("1".equals(cdisc13oc)) {
                String odmVersion = "oc1.3";
                fileName = generateFileService.createODMFile(odmVersion, sysTimeBegin, generalFileDir, datasetBean, activeStudy, generalFileDirCopy, eb, activeStudy.getId(), parentStudy.getId(), studySubjectNumber, true, true, true, null, userBean);
                logger.debug("-- gen odm file 1.3 oc");
                message.append("<p>" + pageMessages.getString("html_email_body_4") + " " + getFileNameStr(fileName) + pageMessages.getString("html_email_body_4_5") + SQLInitServlet.getField("sysURL.base") + "AccessFile?fileId=" + getFileIdInt(fileName) + pageMessages.getString("html_email_body_3") + "</p>");
                // MessageFormat mf = new MessageFormat("");
                // mf.applyPattern(pageMessages.getString(
                // "you_can_access_odm_13_xml"));
                // Object[] arguments = { getFileIdInt(fileName) };
                // auditMessage.append(mf.format(arguments));
                // auditMessage.append(
                // "You can access your ODM 1.3 w/OpenClinica Extension XML file <a href='AccessFile?fileId="
                // + getFileIdInt(fileName)
                // + "'>here</a>.<br/>");
                auditMessage.append(pageMessages.getString("you_can_access_odm_13_xml") + getFileIdInt(fileName) + pageMessages.getString("access_end"));
            }
            if ("1".equals(spss)) {
                SPSSReportBean answer = new SPSSReportBean();
                fileName = generateFileService.createSPSSFile(datasetBean, eb, activeStudy, parentStudy, sysTimeBegin, generalFileDir, answer, generalFileDirCopy, userBean);
                logger.debug("-- gen spss file");
                message.append("<p>" + pageMessages.getString("html_email_body_4") + " " + getFileNameStr(fileName) + pageMessages.getString("html_email_body_4_5") + SQLInitServlet.getField("sysURL.base") + "AccessFile?fileId=" + getFileIdInt(fileName) + pageMessages.getString("html_email_body_3") + "</p>");
                // MessageFormat mf = new MessageFormat("");
                // mf.applyPattern(pageMessages.getString(
                // "you_can_access_spss"));
                // Object[] arguments = { getFileIdInt(fileName) };
                // auditMessage.append(mf.format(arguments));
                // auditMessage.append(
                // "You can access your SPSS files <a href='AccessFile?fileId="
                // + getFileIdInt(fileName) + "'>here</a>.<br/>");
                auditMessage.append(pageMessages.getString("you_can_access_spss") + getFileIdInt(fileName) + pageMessages.getString("access_end"));
            }
            // wrap up the message, and send the email
            message.append("<p>" + pageMessages.getString("html_email_body_5") + "</P><P>" + pageMessages.getString("email_footer"));
            try {
                mailSender.sendEmail(alertEmail.trim(), pageMessages.getString("job_ran_for") + " " + datasetBean.getName(), message.toString(), true);
            } catch (OpenClinicaSystemException ose) {
            // Do Nothing, In the future we might want to have an email
            // status added to system.
            }
            TriggerBean triggerBean = new TriggerBean();
            triggerBean.setDataset(datasetBean);
            triggerBean.setUserAccount(userBean);
            triggerBean.setFullName(trigger.getName());
            auditEventDAO.createRowForExtractDataJobSuccess(triggerBean, auditMessage.toString());
        } else {
            TriggerBean triggerBean = new TriggerBean();
            // triggerBean.setDataset(datasetBean);
            triggerBean.setUserAccount(userBean);
            triggerBean.setFullName(trigger.getName());
            auditEventDAO.createRowForExtractDataJobFailure(triggerBean);
        // logger.debug("-- made it here for some reason, ds id: "
        // + dsId);
        }
    // logger.debug("-- generated file: " + fileNameStr);
    // dataSource.
    } catch (Exception e) {
        // TODO Auto-generated catch block -- ideally should generate a fail
        // msg here, tbh 02/2009
        logger.debug("-- found exception: " + e.getMessage());
        e.printStackTrace();
    }
}

Example 2 with GenerateExtractFileService

use of org.akaza.openclinica.service.extract.GenerateExtractFileService in project OpenClinica by OpenClinica.

the class ExportDatasetServlet method processRequest.

@Override
public void processRequest() throws Exception {
    DatasetDAO dsdao = new DatasetDAO(sm.getDataSource());
    ArchivedDatasetFileDAO asdfdao = new ArchivedDatasetFileDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    GenerateExtractFileService generateFileService = new GenerateExtractFileService(sm.getDataSource(), (CoreResources) SpringServletAccess.getApplicationContext(context).getBean("coreResources"), (RuleSetRuleDao) SpringServletAccess.getApplicationContext(context).getBean("ruleSetRuleDao"));
    String action = fp.getString("action");
    int datasetId = fp.getInt("datasetId");
    int adfId = fp.getInt("adfId");
    if (datasetId == 0) {
        try {
            DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
            datasetId = dsb.getId();
            logger.info("dataset id was zero, trying session: " + datasetId);
        } catch (NullPointerException e) {
            e.printStackTrace();
            logger.info("tripped over null pointer exception");
        }
    }
    DatasetBean db = (DatasetBean) dsdao.findByPK(datasetId);
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    StudyBean study = (StudyBean) sdao.findByPK(db.getStudyId());
    checkRoleByUserAndStudy(ub, study.getParentStudyId(), study.getId());
    // Checks if the study is current study or child of current study
    if (study.getId() != currentStudy.getId() && study.getParentStudyId() != currentStudy.getId()) {
        addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_active_study_or_contact"));
        forwardPage(Page.MENU_SERVLET);
        return;
    }
    /**
     * @vbc 08/06/2008 NEW EXTRACT DATA IMPLEMENTATION get study_id and
     *      parentstudy_id int currentstudyid = currentStudy.getId(); int
     *      parentstudy = currentStudy.getParentStudyId(); if (parentstudy >
     *      0) { // is OK } else { // same parentstudy = currentstudyid; } //
     */
    int currentstudyid = currentStudy.getId();
    // YW 11-09-2008 << modified logic here.
    int parentstudy = currentstudyid;
    // YW 11-09-2008 >>
    StudyBean parentStudy = new StudyBean();
    if (currentStudy.getParentStudyId() > 0) {
        // StudyDAO sdao = new StudyDAO(sm.getDataSource());
        parentStudy = (StudyBean) sdao.findByPK(currentStudy.getParentStudyId());
    }
    ExtractBean eb = generateFileService.generateExtractBean(db, currentStudy, parentStudy);
    if (StringUtil.isBlank(action)) {
        loadList(db, asdfdao, datasetId, fp, eb);
        forwardPage(Page.EXPORT_DATASETS);
    } else if ("delete".equalsIgnoreCase(action) && adfId > 0) {
        boolean success = false;
        ArchivedDatasetFileBean adfBean = (ArchivedDatasetFileBean) asdfdao.findByPK(adfId);
        File file = new File(adfBean.getFileReference());
        if (!file.canWrite()) {
            addPageMessage(respage.getString("write_protected"));
        } else {
            success = file.delete();
            if (success) {
                asdfdao.deleteArchiveDataset(adfBean);
                addPageMessage(respage.getString("file_removed"));
            } else {
                addPageMessage(respage.getString("error_removing_file"));
            }
        }
        loadList(db, asdfdao, datasetId, fp, eb);
        forwardPage(Page.EXPORT_DATASETS);
    } else {
        logger.info("**** found action ****: " + action);
        String generateReport = "";
        // generate file, and show screen export
        // String generalFileDir = DATASET_DIR + db.getId() +
        // File.separator;
        // change this up, so that we don't overwrite anything
        String pattern = "yyyy" + File.separator + "MM" + File.separator + "dd" + File.separator + "HHmmssSSS" + File.separator;
        SimpleDateFormat sdfDir = new SimpleDateFormat(pattern);
        String generalFileDir = DATASET_DIR + db.getId() + File.separator + sdfDir.format(new java.util.Date());
        String fileName = "";
        db.setName(db.getName().replaceAll(" ", "_"));
        Page finalTarget = Page.GENERATE_DATASET;
        finalTarget = Page.EXPORT_DATA_CUSTOM;
        // now display report according to format specified
        // TODO revise final target to set to fileReference????
        long sysTimeBegin = System.currentTimeMillis();
        int fId = 0;
        if ("sas".equalsIgnoreCase(action)) {
            // generateReport =
            // dsdao.generateDataset(db,
            // ExtractBean.SAS_FORMAT,
            // currentStudy,
            // parentStudy);
            long sysTimeEnd = System.currentTimeMillis() - sysTimeBegin;
            String SASFileName = db.getName() + "_sas.sas";
            // logger.info("found data set: "+generateReport);
            generateFileService.createFile(SASFileName, generalFileDir, generateReport, db, sysTimeEnd, ExportFormatBean.TXTFILE, true, ub);
            logger.info("created sas file");
            request.setAttribute("generate", generalFileDir + SASFileName);
            finalTarget.setFileName(generalFileDir + SASFileName);
            fileName = SASFileName;
        // won't work since page creator is private
        } else if ("odm".equalsIgnoreCase(action)) {
            String odmVersion = fp.getString("odmVersion");
            String ODMXMLFileName = "";
            // DRY
            // HashMap answerMap = generateFileService.createODMFile(odmVersion, sysTimeBegin, generalFileDir, db, this.currentStudy, "");
            HashMap answerMap = generateFileService.createODMFile(odmVersion, sysTimeBegin, generalFileDir, db, this.currentStudy, "", eb, currentStudy.getId(), currentStudy.getParentStudyId(), "99", true, true, true, null, ub);
            for (Iterator it = answerMap.entrySet().iterator(); it.hasNext(); ) {
                java.util.Map.Entry entry = (java.util.Map.Entry) it.next();
                Object key = entry.getKey();
                Object value = entry.getValue();
                ODMXMLFileName = (String) key;
                Integer fileID = (Integer) value;
                fId = fileID.intValue();
            }
            fileName = ODMXMLFileName;
            request.setAttribute("generate", generalFileDir + ODMXMLFileName);
            logger.debug("+++ set the following: " + generalFileDir + ODMXMLFileName);
            // send a link with the SQL file? put the generated SQL file with the dataset?
            if (fp.getString("xalan") != null) {
                XalanTriggerService xts = new XalanTriggerService();
                String propertiesPath = SQLInitServlet.getField("filePath");
                // the trick there, we need to open up the zipped file and get at the XML
                openZipFile(generalFileDir + ODMXMLFileName + ".zip");
                // need to find out how to copy this xml file from /bin to the generalFileDir
                SimpleTrigger simpleTrigger = xts.generateXalanTrigger(propertiesPath + File.separator + "ODMReportStylesheet.xsl", ODMXMLFileName, generalFileDir + "output.sql", db.getId());
                scheduler = getScheduler();
                JobDetailBean jobDetailBean = new JobDetailBean();
                jobDetailBean.setGroup(xts.TRIGGER_GROUP_NAME);
                jobDetailBean.setName(simpleTrigger.getName());
                jobDetailBean.setJobClass(org.akaza.openclinica.web.job.XalanStatefulJob.class);
                jobDetailBean.setJobDataMap(simpleTrigger.getJobDataMap());
                // need durability?
                jobDetailBean.setDurability(true);
                jobDetailBean.setVolatility(false);
                try {
                    Date dateStart = scheduler.scheduleJob(jobDetailBean, simpleTrigger);
                    logger.info("== found job date: " + dateStart.toString());
                } catch (SchedulerException se) {
                    se.printStackTrace();
                }
            }
        } else if ("txt".equalsIgnoreCase(action)) {
            // generateReport =
            // dsdao.generateDataset(db,
            // ExtractBean.TXT_FORMAT,
            // currentStudy,
            // parentStudy);
            // eb = dsdao.getDatasetData(eb, currentstudyid, parentstudy);
            String TXTFileName = "";
            HashMap answerMap = generateFileService.createTabFile(eb, sysTimeBegin, generalFileDir, db, currentstudyid, parentstudy, "", ub);
            // and of course DRY
            for (Iterator it = answerMap.entrySet().iterator(); it.hasNext(); ) {
                java.util.Map.Entry entry = (java.util.Map.Entry) it.next();
                Object key = entry.getKey();
                Object value = entry.getValue();
                TXTFileName = (String) key;
                Integer fileID = (Integer) value;
                fId = fileID.intValue();
            }
            fileName = TXTFileName;
            request.setAttribute("generate", generalFileDir + TXTFileName);
            // finalTarget.setFileName(generalFileDir+TXTFileName);
            logger.debug("+++ set the following: " + generalFileDir + TXTFileName);
        } else if ("html".equalsIgnoreCase(action)) {
            // html based dataset browser
            TabReportBean answer = new TabReportBean();
            eb = dsdao.getDatasetData(eb, currentstudyid, parentstudy);
            eb.getMetadata();
            eb.computeReport(answer);
            request.setAttribute("dataset", db);
            request.setAttribute("extractBean", eb);
            finalTarget = Page.GENERATE_DATASET_HTML;
        } else if ("spss".equalsIgnoreCase(action)) {
            SPSSReportBean answer = new SPSSReportBean();
            // removed three lines here and put them in generate file
            // service, createSPSSFile method. tbh 01/2009
            eb = dsdao.getDatasetData(eb, currentstudyid, parentstudy);
            eb.getMetadata();
            eb.computeReport(answer);
            // System.out.println("*** isShowCRFversion:
            // "+db.isShowCRFversion());
            // TODO in the spirit of DRY, if this works we need to remove
            // lines 443-776 in this servlet, tbh 01/2009
            String DDLFileName = "";
            HashMap answerMap = generateFileService.createSPSSFile(db, eb, currentStudy, parentStudy, sysTimeBegin, generalFileDir, answer, "", ub);
            // hmm, DRY?
            for (Iterator it = answerMap.entrySet().iterator(); it.hasNext(); ) {
                java.util.Map.Entry entry = (java.util.Map.Entry) it.next();
                Object key = entry.getKey();
                Object value = entry.getValue();
                DDLFileName = (String) key;
                Integer fileID = (Integer) value;
                fId = fileID.intValue();
            }
            request.setAttribute("generate", generalFileDir + DDLFileName);
            logger.debug("+++ set the following: " + generalFileDir + DDLFileName);
        } else if ("csv".equalsIgnoreCase(action)) {
            CommaReportBean answer = new CommaReportBean();
            eb = dsdao.getDatasetData(eb, currentstudyid, parentstudy);
            eb.getMetadata();
            eb.computeReport(answer);
            long sysTimeEnd = System.currentTimeMillis() - sysTimeBegin;
            // logger.info("found data set: "+generateReport);
            String CSVFileName = db.getName() + "_comma.txt";
            fId = generateFileService.createFile(CSVFileName, generalFileDir, answer.toString(), db, sysTimeEnd, ExportFormatBean.CSVFILE, true, ub);
            fileName = CSVFileName;
            logger.info("just created csv file");
            request.setAttribute("generate", generalFileDir + CSVFileName);
        // finalTarget.setFileName(generalFileDir+CSVFileName);
        } else if ("excel".equalsIgnoreCase(action)) {
            // HSSFWorkbook excelReport = dsdao.generateExcelDataset(db,
            // ExtractBean.XLS_FORMAT,
            // currentStudy,
            // parentStudy);
            long sysTimeEnd = System.currentTimeMillis() - sysTimeBegin;
            // TODO this will change and point to a created excel
            // spreadsheet, tbh
            String excelFileName = db.getName() + "_excel.xls";
            // fId = this.createFile(excelFileName,
            // generalFileDir,
            // excelReport,
            // db, sysTimeEnd,
            // ExportFormatBean.EXCELFILE);
            // logger.info("just created csv file, for excel output");
            // response.setHeader("Content-disposition","attachment;
            // filename="+CSVFileName);
            // logger.info("csv file name: "+CSVFileName);
            finalTarget = Page.GENERATE_EXCEL_DATASET;
            // response.setContentType("application/vnd.ms-excel");
            response.setHeader("Content-Disposition", "attachment; filename=" + db.getName() + "_excel.xls");
            request.setAttribute("generate", generalFileDir + excelFileName);
            logger.info("set 'generate' to :" + generalFileDir + excelFileName);
            fileName = excelFileName;
        // excelReport.write(stream);
        // stream.flush();
        // stream.close();
        // finalTarget.setFileName(WEB_DIR+db.getId()+"/"+excelFileName);
        }
        // <%@page contentType="application/vnd.ms-excel"%>
        if (!finalTarget.equals(Page.GENERATE_EXCEL_DATASET) && !finalTarget.equals(Page.GENERATE_DATASET_HTML)) {
            // to catch all the others and try to set a new path for file
            // capture
            // tbh, 4-18-05
            // request.setAttribute("generate",finalTarget.getFileName());
            // TODO changing path to show refresh page, then window with
            // link to download file, tbh 06-08-05
            // finalTarget.setFileName(
            // "/WEB-INF/jsp/extract/generatedFileDataset.jsp");
            finalTarget.setFileName("" + "/WEB-INF/jsp/extract/generateMetadataCore.jsp");
            // also set up table here???
            asdfdao = new ArchivedDatasetFileDAO(sm.getDataSource());
            ArchivedDatasetFileBean asdfBean = (ArchivedDatasetFileBean) asdfdao.findByPK(fId);
            // *** do we need this below? tbh
            ArrayList newFileList = new ArrayList();
            newFileList.add(asdfBean);
            // request.setAttribute("filelist",newFileList);
            ArrayList filterRows = ArchivedDatasetFileRow.generateRowsFromBeans(newFileList);
            EntityBeanTable table = fp.getEntityBeanTable();
            // sort by date
            table.setSortingIfNotExplicitlySet(3, false);
            String[] columns = { resword.getString("file_name"), resword.getString("run_time"), resword.getString("file_size"), resword.getString("created_date"), resword.getString("created_by") };
            table.setColumns(new ArrayList(Arrays.asList(columns)));
            table.hideColumnLink(0);
            table.hideColumnLink(1);
            table.hideColumnLink(2);
            table.hideColumnLink(3);
            table.hideColumnLink(4);
            // table.setQuery("ExportDataset?datasetId=" +db.getId(), new
            // HashMap());
            // trying to continue...
            // session.setAttribute("newDataset",db);
            request.setAttribute("dataset", db);
            request.setAttribute("file", asdfBean);
            table.setRows(filterRows);
            table.computeDisplay();
            request.setAttribute("table", table);
        // *** do we need this above? tbh
        }
        logger.info("set first part of 'generate' to :" + generalFileDir);
        logger.info("found file name: " + finalTarget.getFileName());
        // String del = CoreResources.getField("dataset_file_delete");
        // if (del.equalsIgnoreCase("true") || del.equals("")) {
        // File deleteFile = new File(generalFileDir + fileName);
        // deleteFile.delete();
        // }
        forwardPage(finalTarget);
    }
}