Examples with TaxonomyProvider org.eol.globi.domain.TaxonomyProvider used on opensource projects

Example 1 with TaxonomyProvider

use of org.eol.globi.domain.TaxonomyProvider in project eol-globi-data by jhpoelen.

the class GlobalNamesService method parseResultNode.

private void parseResultNode(TermMatchListener termMatchListener, JsonNode jsonNode) {
    JsonNode dataList = jsonNode.get("data");
    if (dataList != null && dataList.isArray()) {
        for (JsonNode data : dataList) {
            JsonNode results = data.get("results");
            if (results == null) {
                if (dataList.size() > 0) {
                    JsonNode firstDataElement = dataList.get(0);
                    firstDataElement.get("supplied_name_string");
                    if (firstDataElement.has("is_known_name") && firstDataElement.has("supplied_name_string") && !firstDataElement.get("is_known_name").asBoolean(false)) {
                        noMatch(termMatchListener, data);
                    }
                }
            } else if (results.isArray()) {
                for (JsonNode aResult : results) {
                    TaxonomyProvider provider = getTaxonomyProvider(aResult);
                    if (provider == null) {
                        LOG.warn("found unsupported data_source_id");
                    } else {
                        if (aResult.has("classification_path") && aResult.has("classification_path_ranks")) {
                            parseClassification(termMatchListener, data, aResult, provider);
                        } else {
                            noMatch(termMatchListener, data);
                        }
                    }
                }
            }
        }
    }
}

Example 2 with TaxonomyProvider

use of org.eol.globi.domain.TaxonomyProvider in project eol-globi-data by jhpoelen.

the class EOLService method getEOLPageId.

private Long getEOLPageId(String name, String externalId) throws PropertyEnricherException {
    Long eolPageId = null;
    TaxonomyProvider taxonomyProvider = ExternalIdUtil.taxonomyProviderFor(externalId);
    if (taxonomyProvider != null) {
        String idNoPrefix = ExternalIdUtil.stripPrefix(taxonomyProvider, externalId);
        if (taxonomyProvider == TaxonomyProvider.EOL) {
            try {
                eolPageId = Long.parseLong(idNoPrefix);
            } catch (NumberFormatException ex) {
                throw new PropertyEnricherException("failed to parse eol id [" + idNoPrefix + "]");
            }
        } else if (EOL_TAXON_PROVIDER_MAP.containsKey(taxonomyProvider)) {
            eolPageId = getPageIdFromProvider(EOL_TAXON_PROVIDER_MAP.get(taxonomyProvider), idNoPrefix);
        }
    } else if (StringUtils.isNotBlank(name) && !PropertyAndValueDictionary.NO_NAME.equals(name)) {
        eolPageId = getPageId(name, true);
    }
    return eolPageId;
}

Example 3 with TaxonomyProvider

use of org.eol.globi.domain.TaxonomyProvider in project eol-globi-data by jhpoelen.

the class GlobalNamesService method getTaxonomyProvider.

private TaxonomyProvider getTaxonomyProvider(JsonNode aResult) {
    TaxonomyProvider provider = null;
    if (aResult.has("data_source_id")) {
        int sourceId = aResult.get("data_source_id").getIntValue();
        GlobalNamesSources[] values = GlobalNamesSources.values();
        for (GlobalNamesSources value : values) {
            if (value.getId() == sourceId) {
                provider = value.getProvider();
                break;
            }
        }
    }
    return provider;
}