Examples with Property ambit2.base.data.Property used on opensource projects

Example 11 with Property

use of ambit2.base.data.Property in project ambit-mirror by ideaconsult.

the class BundleChemicalsResource method setGroupProperties.

protected void setGroupProperties(Context context, Request request, Response response) throws ResourceException {
    groupProperties = new Profile();
    Form form = getParams();
    String[] gp = OpenTox.params.sameas.getValuesArray(form);
    if (gp == null || gp.length == 0)
        gp = new String[] { "http://www.opentox.org/api/1.1#ChemicalName", "http://www.opentox.org/api/1.1#CASRN", "http://www.opentox.org/api/1.1#EINECS" };
    for (String g : gp) {
        Property p = new Property(g);
        p.setEnabled(true);
        p.setLabel(g);
        groupProperties.add(p);
    }
    if (enableFeatures) {
        LiteratureEntry ref = LiteratureEntry.getBundleReference(bundle);
        Property p = new Property("tag", ref);
        p.setEnabled(true);
        groupProperties.add(p);
        p = new Property("remarks", ref);
        p.setEnabled(true);
        groupProperties.add(p);
    }
}

Example 12 with Property

use of ambit2.base.data.Property in project ambit-mirror by ideaconsult.

the class BundlePropertyResource method createConvertor.

@Override
public IProcessor<Q, Representation> createConvertor(Variant variant) throws AmbitException, ResourceException {
    /* workaround for clients not being able to set accept headers */
    Form acceptform = getResourceRef(getRequest()).getQueryAsForm();
    Dimension d = new Dimension(250, 250);
    try {
        d.width = Integer.parseInt(acceptform.getFirstValue("w").toString());
    } catch (Exception x) {
    }
    try {
        d.height = Integer.parseInt(acceptform.getFirstValue("h").toString());
    } catch (Exception x) {
    }
    String media = acceptform.getFirstValue("accept-header");
    if (media != null)
        variant.setMediaType(new MediaType(media));
    String filenamePrefix = getRequest().getResourceRef().getPath();
    if (variant.getMediaType().equals(MediaType.TEXT_URI_LIST)) {
        QueryURIReporter r = (QueryURIReporter) getURIReporter(getRequest());
        return new StringConvertor(r, MediaType.TEXT_URI_LIST, filenamePrefix);
    } else if (variant.getMediaType().equals(MediaType.IMAGE_PNG)) {
        return new ImageConvertor(new ImageReporter(variant.getMediaType().getMainType(), variant.getMediaType().getSubType(), d), variant.getMediaType());
    } else if (variant.getMediaType().equals(MediaType.APPLICATION_JAVASCRIPT)) {
        String jsonpcallback = getParams().getFirstValue("jsonp");
        if (jsonpcallback == null)
            jsonpcallback = getParams().getFirstValue("callback");
        return new OutputWriterConvertor(new PropertyJSONReporter(getRequest(), jsonpcallback), MediaType.APPLICATION_JAVASCRIPT);
    } else if (variant.getMediaType().equals(MediaType.APPLICATION_RDF_XML) || variant.getMediaType().equals(MediaType.APPLICATION_RDF_TURTLE) || variant.getMediaType().equals(MediaType.TEXT_RDF_N3) || variant.getMediaType().equals(MediaType.TEXT_RDF_NTRIPLES) || variant.getMediaType().equals(ChemicalMediaType.APPLICATION_JSONLD)) {
        RDFJenaConvertor convertor = new RDFJenaConvertor<Property, IQueryRetrieval<Property>>(new PropertyRDFReporter<IQueryRetrieval<Property>>(getRequest(), variant.getMediaType()), variant.getMediaType(), filenamePrefix);
        return convertor;
    } else {
        // (variant.getMediaType().equals(MediaType.APPLICATION_JSON)) {
        return new OutputWriterConvertor(new PropertyJSONReporter(getRequest()), MediaType.APPLICATION_JSON);
    }
}

Example 13 with Property

use of ambit2.base.data.Property in project ambit-mirror by ideaconsult.

the class BundlePropertyResource method createCallable.

@Override
protected CallableProtectedTask<String> createCallable(Method method, Form form, Property item) throws ResourceException {
    SubstanceEndpointsBundle bundle = null;
    Object id = getRequest().getAttributes().get(OpenTox.URI.bundle.getKey());
    if ((id != null))
        try {
            bundle = new SubstanceEndpointsBundle(new Integer(Reference.decode(id.toString())));
        } catch (Exception x) {
        }
    Connection conn = null;
    try {
        PropertyURIReporter r = new PropertyURIReporter(getRequest());
        DBConnection dbc = new DBConnection(getApplication().getContext(), getConfigFile());
        conn = dbc.getConnection(30, true, 8);
        return new CallableEndpointsBundle(bundle, r, method, form, conn, getToken());
    } catch (Exception x) {
        x.printStackTrace();
        try {
            conn.close();
        } catch (Exception xx) {
        }
        throw new ResourceException(Status.SERVER_ERROR_INTERNAL, x);
    }
}

Example 14 with Property

use of ambit2.base.data.Property in project ambit-mirror by ideaconsult.

the class QMapResource method createQuery.

@Override
protected IQueryRetrieval<QMap> createQuery(Context context, Request request, Response response) throws ResourceException {
    QueryQMap query = new QueryQMap();
    Object qid = request.getAttributes().get(QMapResource.qmapKey);
    if (qid != null)
        try {
            query.setValue(new QMap(Integer.parseInt(qid.toString())));
            return query;
        } catch (Exception x) {
        }
    // filter by dataset
    Form form = request.getResourceRef().getQueryAsForm();
    Object datasetURI = OpenTox.params.dataset_uri.getFirstValue(form);
    if (datasetURI != null)
        try {
            int id = (Integer) OpenTox.URI.dataset.getId(Reference.decode(datasetURI.toString().trim()), request.getRootRef());
            QMap map = new QMap();
            map.setDataset(new SourceDataset());
            map.getDataset().setID(id);
            query.setValue(map);
        } catch (Exception x) {
        /* ignore the filter */
        }
    Object propertyURI = OpenTox.params.feature_uris.getFirstValue(form);
    if (propertyURI != null)
        try {
            int id = (Integer) OpenTox.URI.feature.getId(Reference.decode(propertyURI.toString().trim()), request.getRootRef());
            if (query.getValue() == null)
                query.setValue(new QMap());
            Property p = new Property(null);
            p.setId(id);
            query.getValue().setProperty(p);
        } catch (Exception x) {
        /* ignore the filter */
        }
    return query;
}

Example 15 with Property

use of ambit2.base.data.Property in project ambit-mirror by ideaconsult.

the class QMapSpaceResource method createQuery.

@Override
protected IQueryRetrieval<QMapSpace> createQuery(Context context, Request request, Response response) throws ResourceException {
    QueryQMapSpace query = new QueryQMapSpace();
    Form form = request.getResourceRef().getQueryAsForm();
    try {
        query.setThreshold_a(Integer.parseInt(form.getFirstValue("thresholda")));
    } catch (Exception x) {
        query.setThreshold_a(0);
    }
    Object qmapURI = OpenTox.params.qmap_uri.getFirstValue(form);
    if (qmapURI != null)
        try {
            int id = (Integer) OpenTox.URI.qmap.getId(Reference.decode(qmapURI.toString().trim()), request.getRootRef());
            query.setValue(new QMap(id));
            return query;
        } catch (Exception x) {
        /* ignore the filter */
        }
    // filter by dataset
    Object datasetURI = OpenTox.params.dataset_uri.getFirstValue(form);
    if (datasetURI != null)
        try {
            int id = (Integer) OpenTox.URI.dataset.getId(Reference.decode(datasetURI.toString().trim()), request.getRootRef());
            QMap map = new QMap();
            map.setDataset(new SourceDataset());
            map.getDataset().setID(id);
            query.setValue(map);
        } catch (Exception x) {
        /* ignore the filter */
        }
    Object propertyURI = OpenTox.params.feature_uris.getFirstValue(form);
    if (propertyURI != null)
        try {
            int id = (Integer) OpenTox.URI.feature.getId(Reference.decode(propertyURI.toString().trim()), request.getRootRef());
            if (query.getValue() == null)
                query.setValue(new QMap());
            Property p = new Property(null);
            p.setId(id);
            query.getValue().setProperty(p);
        } catch (Exception x) {
        /* ignore the filter */
        }
    return query;
}