Examples with Profile ambit2.base.data.Profile used on opensource projects

Example 1 with Profile

use of ambit2.base.data.Profile in project ambit-mirror by ideaconsult.

the class AmbitFacetResource method getProperty.

protected Template getProperty(String[] propertyURI, int max) throws ResourceException {
    if (propertyURI == null)
        return null;
    Template profile = new Template();
    Connection connection = null;
    try {
        DBConnection dbc = new DBConnection(getContext());
        connection = dbc.getConnection();
        ProfileReader reader = new ProfileReader(getRequest().getRootRef(), profile, getApplication().getContext(), getToken(), getRequest().getCookies(), getRequest().getClientInfo() == null ? null : getRequest().getClientInfo().getAgent(), getRequest().getResourceRef().toString());
        reader.setCloseConnection(false);
        reader.setConnection(connection);
        for (int i = 0; i < propertyURI.length; i++) {
            reader.process(new Reference(propertyURI[i]));
            if ((i + 1) >= max)
                break;
        }
        return profile;
    } catch (Exception x) {
        throw new ResourceException(Status.CLIENT_ERROR_BAD_REQUEST, x.getMessage(), x);
    } finally {
        try {
            connection.close();
        } catch (Exception x) {
        }
    }
}

Example 2 with Profile

use of ambit2.base.data.Profile in project ambit-mirror by ideaconsult.

the class ChartResource method createImage.

protected BufferedImage createImage() throws ResourceException {
    BufferedImage image = null;
    Connection connection = null;
    try {
        DBConnection dbc = new DBConnection(getContext());
        connection = dbc.getConnection();
        ambit2.base.data.Template profile = new ambit2.base.data.Template();
        ProfileReader reader = new ProfileReader(getRequest().getRootRef(), profile, getApplication().getContext(), getToken(), getRequest().getCookies(), getRequest().getClientInfo() == null ? null : getRequest().getClientInfo().getAgent(), getRequest().getResourceRef().toString());
        reader.setCloseConnection(false);
        reader.setConnection(connection);
        for (String p : property) reader.process(new Reference(p));
        switch(mode) {
            case pie:
                {
                    Iterator<Property> i = profile.getProperties(true);
                    while (i.hasNext()) {
                        PieChartGenerator<ISourceDataset> chart = new PieChartGenerator<ISourceDataset>();
                        chart.setProperty(i.next());
                        chart.setConnection(connection);
                        chart.setLegend(legend);
                        chart.setThumbnail(thumbnail);
                        chart.setWidth(w);
                        chart.setHeight(h);
                        chart.setLogX(logX);
                        chart.setLogY(logY);
                        image = chart.process(dataset);
                        // ChartUtilities.writeImageMap(writer, name, info, useOverLibForToolTips)
                        break;
                    }
                    break;
                }
            case histogram:
                {
                    Iterator<Property> i = profile.getProperties(true);
                    while (i.hasNext()) {
                        HistogramChartGenerator chart = new HistogramChartGenerator();
                        chart.setLogX(logX);
                        chart.setLogY(logY);
                        chart.setMinX(minX);
                        chart.setMaxX(maxX);
                        chart.setPropertyX(i.next());
                        chart.setConnection(connection);
                        chart.setLegend(legend);
                        chart.setThumbnail(thumbnail);
                        chart.setWidth(w);
                        chart.setHeight(h);
                        image = chart.process(dataset);
                        // ChartUtilities.writeImageMap(writer, name, info, useOverLibForToolTips)
                        break;
                    }
                    break;
                }
            case xy:
                {
                    Property[] p = new Property[2];
                    int i = 0;
                    Iterator<Property> it = profile.getProperties(true);
                    while (it.hasNext()) {
                        p[i] = it.next();
                        i++;
                        if (i >= 2)
                            break;
                    }
                    PropertiesChartGenerator chart = new PropertiesChartGenerator();
                    chart.setLogX(logX);
                    chart.setLogY(logY);
                    chart.setThumbnail(thumbnail);
                    chart.setPropertyX(p[0]);
                    chart.setPropertyY(p.length < 2 ? p[0] : p[1]);
                    chart.setConnection(connection);
                    chart.setWidth(w);
                    chart.setHeight(h);
                    chart.setLegend(legend);
                    image = chart.process(dataset);
                    break;
                }
            case bar:
                {
                    Property[] p = new Property[2];
                    int i = 0;
                    Iterator<Property> it = profile.getProperties(true);
                    while (it.hasNext()) {
                        p[i] = it.next();
                        i++;
                        if (i >= 2)
                            break;
                    }
                    if (i == 0) {
                        FingerprintHistogramDataset chart = new FingerprintHistogramDataset();
                        chart.setLogX(logX);
                        chart.setLogY(logY);
                        chart.setConnection(connection);
                        chart.setLegend(legend);
                        chart.setParam(param);
                        chart.setThumbnail(thumbnail);
                        chart.setWidth(w);
                        chart.setHeight(h);
                        image = chart.process(dataset);
                    } else {
                        BarChartGeneratorDataset chart = new BarChartGeneratorDataset();
                        chart.setLogX(logX);
                        chart.setLogY(logY);
                        chart.setPropertyX(p[0]);
                        chart.setPropertyY(p.length < 2 ? p[0] : p[1]);
                        chart.setConnection(connection);
                        chart.setLegend(legend);
                        chart.setThumbnail(thumbnail);
                        chart.setWidth(w);
                        chart.setHeight(h);
                        image = chart.process(dataset);
                    }
                    break;
                }
            default:
                {
                    image = null;
                }
        }
    } catch (Exception x) {
        throw new ResourceException(Status.CLIENT_ERROR_BAD_REQUEST, x.getMessage(), x);
    } finally {
        try {
            connection.close();
        } catch (Exception x) {
        }
    }
    if (image == null)
        throw new ResourceException(Status.CLIENT_ERROR_BAD_REQUEST);
    return image;
}

Example 3 with Profile

use of ambit2.base.data.Profile in project ambit-mirror by ideaconsult.

the class BundleChemicalsResource method setGroupProperties.

protected void setGroupProperties(Context context, Request request, Response response) throws ResourceException {
    groupProperties = new Profile();
    Form form = getParams();
    String[] gp = OpenTox.params.sameas.getValuesArray(form);
    if (gp == null || gp.length == 0)
        gp = new String[] { "http://www.opentox.org/api/1.1#ChemicalName", "http://www.opentox.org/api/1.1#CASRN", "http://www.opentox.org/api/1.1#EINECS" };
    for (String g : gp) {
        Property p = new Property(g);
        p.setEnabled(true);
        p.setLabel(g);
        groupProperties.add(p);
    }
    if (enableFeatures) {
        LiteratureEntry ref = LiteratureEntry.getBundleReference(bundle);
        Property p = new Property("tag", ref);
        p.setEnabled(true);
        groupProperties.add(p);
        p = new Property("remarks", ref);
        p.setEnabled(true);
        groupProperties.add(p);
    }
}

Example 4 with Profile

use of ambit2.base.data.Profile in project ambit-mirror by ideaconsult.

the class QueryResource method createTemplate.

protected Template createTemplate(Context context, Request request, Response response, String[] featuresURI) throws ResourceException {
    Connection conn = null;
    try {
        Template profile = new Template(null);
        profile.setId(-1);
        ProfileReader reader = new ProfileReader(getRequest().getRootRef(), profile, getApplication().getContext(), getToken(), getRequest().getCookies(), getRequest().getClientInfo() == null ? null : getRequest().getClientInfo().getAgent(), getRequest().getResourceRef().toString());
        reader.setCloseConnection(false);
        DBConnection dbc = new DBConnection(getApplication().getContext());
        conn = dbc.getConnection(30, true, 5);
        try {
            for (String featureURI : featuresURI) {
                if (featureURI == null)
                    continue;
                reader.setConnection(conn);
                profile = reader.process(new Reference(featureURI));
                reader.setProfile(profile);
            }
            // readFeatures(featureURI, profile);
            if (profile.size() == 0) {
                reader.setConnection(conn);
                String templateuri = getDefaultTemplateURI(context, request, response);
                if (templateuri != null)
                    profile = reader.process(new Reference(templateuri));
                reader.setProfile(profile);
            }
        } catch (Exception x) {
            getLogger().log(Level.SEVERE, x.getMessage(), x);
        } finally {
            // the reader closes the connection
            reader.setCloseConnection(true);
            try {
                reader.close();
            } catch (Exception x) {
            }
        // System.out.println("Closed "+conn.isClosed());
        // try { conn.close();} catch (Exception x) {}
        }
        return profile;
    } catch (Exception x) {
        getLogger().log(Level.SEVERE, x.getMessage(), x);
        try {
            if (conn != null) {
                conn.close();
            }
        } catch (Exception xx) {
        }
        throw new ResourceException(Status.CLIENT_ERROR_REQUEST_TIMEOUT, x);
    }
}

Example 5 with Profile

use of ambit2.base.data.Profile in project ambit-mirror by ideaconsult.

the class PropertiesByDatasetResource method createTemplate.

protected Template createTemplate(Form form) throws ResourceException {
    Object featureid = getRequest().getAttributes().get(PropertiesByDatasetResource.idfeaturedef);
    if (featureid != null)
        try {
            Template profile = new Template(null);
            Property p = new Property(null);
            p.setEnabled(true);
            p.setId(Integer.parseInt(featureid.toString()));
            profile.add(p);
            return profile;
        } catch (Exception x) {
            throw new ResourceException(Status.CLIENT_ERROR_BAD_REQUEST);
        }
    String[] featuresURI = OpenTox.params.feature_uris.getValuesArray(form);
    if (featuresURI != null)
        return createTemplate(getContext(), getRequest(), getResponse(), featuresURI);
    else
        return null;
}