Examples with InvalidResourceIDException ambit2.rest.error.InvalidResourceIDException used on opensource projects

Example 1 with InvalidResourceIDException

use of ambit2.rest.error.InvalidResourceIDException in project ambit-mirror by ideaconsult.

the class ChartResource method getDataset.

protected ISourceDataset getDataset(String uri) throws InvalidResourceIDException {
    Map<String, Object> vars = new HashMap<String, Object>();
    Template template = OpenTox.URI.dataset.getTemplate(getRequest().getRootRef());
    String id = null;
    try {
        template.parse(uri, vars);
        id = vars.get(OpenTox.URI.dataset.getKey()).toString();
    } catch (Exception x) {
        return null;
    }
    if (id != null)
        try {
            Integer idnum = new Integer(Reference.decode(id.toString()));
            SourceDataset dataset = new SourceDataset();
            dataset.setID(idnum);
            return dataset;
        } catch (NumberFormatException x) {
            if (id.toString().startsWith(DatasetStructuresResource.QR_PREFIX)) {
                String key = id.toString().substring(DatasetStructuresResource.QR_PREFIX.length());
                try {
                    ISourceDataset dataset = new StoredQuery();
                    dataset.setID(Integer.parseInt(key.toString()));
                    return dataset;
                } catch (NumberFormatException xx) {
                    throw new InvalidResourceIDException(id);
                }
            }
        } catch (Exception x) {
            throw new InvalidResourceIDException(id);
        }
    return null;
}

Example 2 with InvalidResourceIDException

use of ambit2.rest.error.InvalidResourceIDException in project ambit-mirror by ideaconsult.

the class MetadatasetResource method getQuery.

protected IQueryRetrieval<M> getQuery(Context context, Request request, Response response, boolean IDcanBeEmpty) throws ResourceException {
    Form form = getResourceRef(request).getQueryAsForm();
    try {
        headless = Boolean.parseBoolean(form.getFirstValue("headless"));
    } catch (Exception x) {
        headless = false;
    }
    AbstractReadDataset query = null;
    structureParam = getStructureParameter();
    StringCondition condition;
    try {
        condition = StringCondition.getInstance(form.getFirstValue(QueryResource.condition));
    } catch (Exception x) {
        condition = StringCondition.getInstance(StringCondition.C_EQ);
    }
    Property property = new Property(null);
    property.setClazz(null);
    property.setLabel(null);
    property.setReference(null);
    for (search_features sf : search_features.values()) {
        Object id = form.getFirstValue(sf.name());
        if (id != null) {
            // because we are not storing full local references!
            if (search_features.feature_hassource.equals(sf)) {
                String parent = getRequest().getRootRef().toString();
                int p = id.toString().indexOf(parent);
                if (p >= 0) {
                    // yet one more hack ... should store at least prefixes
                    id = id.toString().substring(p + parent.length()).replace("/algorithm/", "").replace("/model/", "");
                }
            }
            sf.setProperty(property, id);
            if (query == null) {
                query = new QueryDatasetByFeatures(property, condition);
                ((QueryDatasetByFeatures) query).setStructure(structureParam);
            }
        }
    }
    if (query == null) {
        query = new ReadDataset();
        query.setValue(null);
    }
    Object id = request.getAttributes().get(DatasetStructuresResource.datasetKey);
    if (id != null)
        try {
            Integer idnum = new Integer(Reference.decode(id.toString()));
            dataset = (M) new SourceDataset();
            dataset.setID(idnum);
            query.setValue(dataset);
        } catch (NumberFormatException x) {
            if (id.toString().startsWith(DatasetStructuresResource.QR_PREFIX)) {
                String key = id.toString().substring(DatasetStructuresResource.QR_PREFIX.length());
                try {
                    IQueryRetrieval<M> q = (IQueryRetrieval<M>) new ReadStoredQuery(Integer.parseInt(key.toString()));
                    return q;
                } catch (NumberFormatException xx) {
                    throw new InvalidResourceIDException(id);
                }
            } else {
                dataset = (M) new SourceDataset();
                dataset.setName(id.toString());
                query.setValue(dataset);
            }
        } catch (Exception x) {
            throw new InvalidResourceIDException(id);
        }
    if (!IDcanBeEmpty && (query.getValue() == null))
        throw new ResourceException(Status.CLIENT_ERROR_BAD_REQUEST, "Empty dataset ID!");
    return query;
}

Example 3 with InvalidResourceIDException

use of ambit2.rest.error.InvalidResourceIDException in project ambit-mirror by ideaconsult.

the class ChemicalSpaceResource method getQueryById.

@Override
protected Q getQueryById(String key) throws ResourceException {
    if (key.startsWith(DatasetStructuresResource.QR_PREFIX)) {
        key = key.substring(DatasetStructuresResource.QR_PREFIX.length());
        try {
            queryResultsID = Integer.parseInt(key.toString());
        } catch (NumberFormatException x) {
            throw new InvalidResourceIDException(key);
        }
        ChemicalSpaceQuery q = new ChemicalSpaceQuery();
        q.setValue(getProperty());
        StoredQuery dataset = new StoredQuery();
        dataset.setID(queryResultsID);
        q.setFieldname(dataset);
        Form form = getResourceRef(getRequest()).getQueryAsForm();
        try {
            q.setMaxPoints(Integer.parseInt(form.getFirstValue("resolution")));
        } catch (Exception x) {
        // default
        }
        setPaging(form, q);
        return (Q) q;
    }
    // else return getDatasetByName(key);
    throw new InvalidResourceIDException(key);
}

Example 4 with InvalidResourceIDException

use of ambit2.rest.error.InvalidResourceIDException in project ambit-mirror by ideaconsult.

the class DatasetQueryCombined method getDataset.

protected ISourceDataset getDataset(String uri) throws InvalidResourceIDException {
    Map<String, Object> vars = new HashMap<String, Object>();
    Template template = OpenTox.URI.dataset.getTemplate(getRequest().getRootRef());
    String id = null;
    try {
        template.parse(uri, vars);
        id = vars.get(OpenTox.URI.dataset.getKey()).toString();
    } catch (Exception x) {
        return null;
    }
    if (id != null)
        try {
            Integer idnum = new Integer(Reference.decode(id.toString()));
            SourceDataset dataset = new SourceDataset();
            dataset.setID(idnum);
            return dataset;
        } catch (NumberFormatException x) {
            if (id.toString().startsWith(DatasetStructuresResource.QR_PREFIX)) {
                String key = id.toString().substring(DatasetStructuresResource.QR_PREFIX.length());
                try {
                    ISourceDataset dataset = new StoredQuery();
                    dataset.setID(Integer.parseInt(key.toString()));
                    return dataset;
                } catch (NumberFormatException xx) {
                    throw new InvalidResourceIDException(id);
                }
            }
        } catch (Exception x) {
            throw new InvalidResourceIDException(id);
        }
    return null;
}

Example 5 with InvalidResourceIDException

use of ambit2.rest.error.InvalidResourceIDException in project ambit-mirror by ideaconsult.

the class QueryStructureRelationResource method getQueryById.

@Override
protected Q getQueryById(String key) throws ResourceException {
    if (key.startsWith(DatasetStructuresResource.QR_PREFIX)) {
        key = key.substring(DatasetStructuresResource.QR_PREFIX.length());
        try {
            queryResultsID = Integer.parseInt(key.toString());
        } catch (NumberFormatException x) {
            throw new InvalidResourceIDException(key);
        }
        ReadDatasetRelation q = new ReadDatasetRelation();
        q.setFieldname(relation.name());
        StoredQuery dataset = new StoredQuery();
        dataset.setID(queryResultsID);
        q.setValue(dataset);
        Form form = getResourceRef(getRequest()).getQueryAsForm();
        setPaging(form, q);
        return (Q) q;
    }
    // else return getDatasetByName(key);
    throw new InvalidResourceIDException(key);
}