Search in sources :

Example 1 with CallableTautomersGenerator

use of ambit2.rest.task.tautomers.CallableTautomersGenerator in project ambit-mirror by ideaconsult.

the class ModelResource method createCallable.

@Override
protected CallableQueryProcessor createCallable(Form form, ModelQueryResults model) throws ResourceException {
    try {
        readVariables(model);
        Object token = getToken();
        final ModelPredictor thepredictor = ModelResource.getPredictor(model, getRequest());
        if (model.getContentMediaType().equals(AlgorithmFormat.WWW_FORM.getMediaType())) {
            if (thepredictor instanceof ExpertModelpredictor)
                return new CallableModelPredictor<IStructureRecord, ExpertModelpredictor, Object>(form, getRequest().getRootRef(), getContext(), (ExpertModelpredictor) thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo()) {

                    @Override
                    protected void processForm(Reference applicationRootReference, Form form) {
                        super.processForm(applicationRootReference, form);
                        ((ExpertModelpredictor) thepredictor).setValue(form.getFirstValue("value"));
                    }
                };
            else
                return new CallableModelPredictor<IStructureRecord, ModelPredictor, Object>(form, getRequest().getRootRef(), getContext(), thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
        } else if (model.getContentMediaType().equals(AlgorithmFormat.WEKA.getMediaType())) {
            return // reads Instances, instead of IStructureRecord
            new CallableWekaPredictor<Object, Object>(form, getRequest().getRootRef(), getContext(), thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
        /*
				 * } else if (model.getContentMediaType().equals(
				 * 
				 * AlgorithmFormat.WAFFLES_JSON.getMediaType())) { return new
				 * CallableWafflesPredictor(form, getRequest() .getRootRef(),
				 * getContext(), (WafflesPredictor) thepredictor,
				 * token,getRequest().getResourceRef().toString());
				 */
        } else if (model.getContentMediaType().equals(AlgorithmFormat.COVERAGE_SERIALIZED.getMediaType())) {
            if (model.getPredictors().size() == 0) {
                // based AD
                if (thepredictor instanceof FingerprintsPredictor)
                    return new CallableModelPredictor<IStructureRecord, FingerprintsPredictor, Object>(form, getRequest().getRootRef(), getContext(), (FingerprintsPredictor) thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
                else
                    throw new ResourceException(Status.CLIENT_ERROR_BAD_REQUEST, String.format("Not supported %s", thepredictor.getClass().getName()));
            } else {
                return new CallableModelPredictor(form, getRequest().getRootRef(), getContext(), thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
            /*
					 * return new CallableWekaPredictor<DataCoverage>( //reads
					 * Instances, instead of IStructureRecord form,
					 * getRequest().getRootRef(), getContext(), predictor) ;
					 */
            }
        } else if (model.getContentMediaType().equals(AlgorithmFormat.Structure2D.getMediaType())) {
            return new CallableStructureOptimizer(form, getRequest().getRootRef(), getContext(), (Structure2DProcessor) thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
        } else if (model.getContentMediaType().equals(AlgorithmFormat.MOPAC.getMediaType())) {
            return new CallableStructureOptimizer(form, getRequest().getRootRef(), getContext(), (StructureProcessor) thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
        } else if (model.getContentMediaType().equals(AlgorithmFormat.TAUTOMERS.getMediaType())) {
            return new CallableTautomersGenerator(form, getRequest().getRootRef(), getContext(), (TautomersGenerator) thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
        } else if (model.getContentMediaType().equals(AlgorithmFormat.JAVA_CLASS.getMediaType())) {
            return new CallableDescriptorCalculator(form, getRequest().getRootRef(), getContext(), (DescriptorPredictor) thepredictor, token, getRequest().getResourceRef().toString(), getClientInfo());
        } else
            throw new ResourceException(Status.CLIENT_ERROR_UNSUPPORTED_MEDIA_TYPE, model.getContentMediaType());
    } catch (ResourceException x) {
        throw x;
    } catch (Exception x) {
        throw new ResourceException(Status.SERVER_ERROR_INTERNAL, x.getMessage(), x);
    } finally {
    }
}
Also used : ExpertModelpredictor(ambit2.rest.model.predictor.ExpertModelpredictor) Form(org.restlet.data.Form) Reference(org.restlet.data.Reference) Structure2DProcessor(ambit2.rest.model.predictor.Structure2DProcessor) CallableTautomersGenerator(ambit2.rest.task.tautomers.CallableTautomersGenerator) TautomersGenerator(ambit2.rest.task.tautomers.TautomersGenerator) ModelPredictor(ambit2.rest.model.predictor.ModelPredictor) CallableModelPredictor(ambit2.rest.model.task.CallableModelPredictor) ExternalModelPredictor(ambit2.rest.model.predictor.ExternalModelPredictor) AmbitException(net.idea.modbcum.i.exceptions.AmbitException) ResourceException(org.restlet.resource.ResourceException) NotFoundException(net.idea.modbcum.i.exceptions.NotFoundException) BatchProcessingException(net.idea.modbcum.i.exceptions.BatchProcessingException) FingerprintsPredictor(ambit2.rest.model.predictor.FingerprintsPredictor) CallableStructureOptimizer(ambit2.rest.task.CallableStructureOptimizer) IStructureRecord(ambit2.base.interfaces.IStructureRecord) CallableModelPredictor(ambit2.rest.model.task.CallableModelPredictor) CallableTautomersGenerator(ambit2.rest.task.tautomers.CallableTautomersGenerator) CallableDescriptorCalculator(ambit2.rest.task.CallableDescriptorCalculator) ResourceException(org.restlet.resource.ResourceException)

Aggregations

IStructureRecord (ambit2.base.interfaces.IStructureRecord)1 ExpertModelpredictor (ambit2.rest.model.predictor.ExpertModelpredictor)1 ExternalModelPredictor (ambit2.rest.model.predictor.ExternalModelPredictor)1 FingerprintsPredictor (ambit2.rest.model.predictor.FingerprintsPredictor)1 ModelPredictor (ambit2.rest.model.predictor.ModelPredictor)1 Structure2DProcessor (ambit2.rest.model.predictor.Structure2DProcessor)1 CallableModelPredictor (ambit2.rest.model.task.CallableModelPredictor)1 CallableDescriptorCalculator (ambit2.rest.task.CallableDescriptorCalculator)1 CallableStructureOptimizer (ambit2.rest.task.CallableStructureOptimizer)1 CallableTautomersGenerator (ambit2.rest.task.tautomers.CallableTautomersGenerator)1 TautomersGenerator (ambit2.rest.task.tautomers.TautomersGenerator)1 AmbitException (net.idea.modbcum.i.exceptions.AmbitException)1 BatchProcessingException (net.idea.modbcum.i.exceptions.BatchProcessingException)1 NotFoundException (net.idea.modbcum.i.exceptions.NotFoundException)1 Form (org.restlet.data.Form)1 Reference (org.restlet.data.Reference)1 ResourceException (org.restlet.resource.ResourceException)1