Examples with Facet au.org.ala.legend.Facet used on opensource projects

Example 21 with Facet

use of au.org.ala.legend.Facet in project spatial-portal by AtlasOfLivingAustralia.

the class AreaReportPDF method initCsvSpecies.

private void initCsvSpecies() {
    setProgress("Getting information: species list", 0);
    if (isCancelled())
        return;
    csvs.put("Species", query.speciesList());
    speciesLinks.put("Species", query.getWS() + "/occurrences/search?q=" + query.getQ());
    for (int i = 0; i < StringConstants.SPECIES_GROUPS.length; i++) {
        String s = StringConstants.SPECIES_GROUPS[i];
        setProgress("Getting information: species list for lifeform " + s, 0);
        if (isCancelled())
            return;
        BiocacheQuery q = query.newFacet(new Facet("species_group", s, true), true);
        csvs.put(s, q.speciesList());
        speciesLinks.put(s, q.getWS() + "/occurrences/search?q=" + q.getQ());
        counts.put(s, String.valueOf(q.getSpeciesCount()));
        counts.put(s + " (spatially valid only)", String.valueOf(q.getSpeciesCountKosher()));
    }
    setProgress("Getting information: threatened species list", 0);
    if (isCancelled())
        return;
    BiocacheQuery q = query.newFacet(Facet.parseFacet(CommonData.speciesListThreatened), true);
    csvs.put("Threatened_Species", q.speciesList());
    speciesLinks.put("Threatened_Species", q.getWS() + "/occurrences/search?q=" + q.getQ());
    counts.put("Threatened_Species", String.valueOf(q.getSpeciesCount()));
    setProgress("Getting information: iconic species list", 0);
    if (isCancelled())
        return;
    q = query.newFacet(new Facet("species_list_uid", "dr781", true), true);
    csvs.put("Iconic_Species", q.speciesList());
    speciesLinks.put("Iconic_Species", q.getWS() + "/occurrences/search?q=" + q.getQ());
    counts.put("Iconic_Species", String.valueOf(q.getSpeciesCount()));
    setProgress("Getting information: migratory species list", 0);
    if (isCancelled())
        return;
    q = query.newFacet(new Facet("species_list_uid", "dr1005", true), true);
    csvs.put("Migratory_Species", q.speciesList());
    speciesLinks.put("Migratory_Species", q.getWS() + "/occurrences/search?q=" + q.getQ());
    counts.put("Migratory_Species", String.valueOf(q.getSpeciesCount()));
    setProgress("Getting information: invasive species list", 0);
    if (isCancelled())
        return;
    q = query.newFacet(Facet.parseFacet(CommonData.speciesListInvasive), true);
    csvs.put("Invasive_Species", q.speciesList());
    speciesLinks.put("Invasive_Species", q.getWS() + "/occurrences/search?q=" + q.getQ());
    counts.put("Invasive_Species", String.valueOf(q.getSpeciesCount()));
}

Example 22 with Facet

use of au.org.ala.legend.Facet in project spatial-portal by AtlasOfLivingAustralia.

the class AreaReportPDF method initImages.

private void initImages() {
    double aspectRatio = 1.6;
    String type = "png";
    int resolution = 0;
    String basemap = "Minimal";
    mlArea.setColourMode("hatching");
    List<Double> bbox = mlArea.getMapLayerMetadata().getBbox();
    //30% width buffer in decimal degrees
    double step = (bbox.get(2) - bbox.get(0)) * 0.3;
    double[] extents = new double[] { bbox.get(0) - step, bbox.get(1) - step, bbox.get(2) + step, bbox.get(3) + step };
    step = (bbox.get(2) - bbox.get(0)) * 0.05;
    double[] extentsSmall = new double[] { bbox.get(0) - step, bbox.get(1) - step, bbox.get(2) + step, bbox.get(3) + step };
    step = (bbox.get(2) - bbox.get(0)) * 10;
    double[] extentsLarge = new double[] { bbox.get(0) - step, bbox.get(1) - step, bbox.get(2) + step, bbox.get(3) + step };
    if (extentsLarge[2] > 180) {
        extentsLarge[2] = 180;
    }
    if (extentsLarge[0] < -180) {
        extentsLarge[0] = -180;
    }
    if (extentsLarge[1] < -85) {
        extentsLarge[1] = -85;
    }
    if (extentsLarge[3] > 85) {
        extentsLarge[3] = 85;
    }
    setProgress("Getting information: images for map of map", 0);
    if (isCancelled())
        return;
    MapLayer mlSpecies = createSpeciesLayer(query, 0, 0, 255, .6f, false, 9, false);
    List<MapLayer> lifeforms = new ArrayList<MapLayer>();
    for (int i = 0; i < StringConstants.SPECIES_GROUPS.length; i++) {
        String s = StringConstants.SPECIES_GROUPS[i];
        setProgress("Getting information: images for map of lifeform " + s, 0);
        if (isCancelled())
            return;
        lifeforms.add(createSpeciesLayer(query.newFacet(new Facet("species_group", s, true), true), 0, 0, 255, .6f, false, 9, false));
    }
    setProgress("Getting information: images for map of threatened species", 0);
    if (isCancelled())
        return;
    MapLayer threatenedSpecies = createSpeciesLayer(query.newFacet(Facet.parseFacet(CommonData.speciesListThreatened), true), 0, 0, 255, .6f, false, 9, false);
    setProgress("Getting information: images for map of iconic species", 0);
    if (isCancelled())
        return;
    MapLayer iconicSpecies = createSpeciesLayer(query.newFacet(new Facet("species_list_uid", "dr781", true), true), 0, 0, 255, .6f, false, 9, false);
    setProgress("Getting information: images for map of migratory species", 0);
    if (isCancelled())
        return;
    MapLayer migratorySpecies = createSpeciesLayer(query.newFacet(new Facet("species_list_uid", "dr1005", true), true), 0, 0, 255, .6f, false, 9, false);
    setProgress("Getting information: images for map of invasive species", 0);
    if (isCancelled())
        return;
    MapLayer invasiveSpecies = createSpeciesLayer(query.newFacet(Facet.parseFacet(CommonData.speciesListInvasive), true), 0, 0, 255, .6f, false, 9, false);
    String[] layers = CommonData.getSettings().getProperty("detailed_area_report_layers").split("\n");
    for (String layer : layers) {
        if (!layer.isEmpty()) {
            String[] split = layer.trim().split("\\|");
            String shortname = split[0];
            String displayname = split[1];
            String geoserver_url = split[2];
            String canSetColourMode = split[3];
            String description = split[4];
            setProgress("Getting information: images for map of layer " + shortname, 0);
            if (isCancelled())
                return;
            MapLayer ml = createLayer(shortname, 1.0f);
            if ("Y".equalsIgnoreCase(canSetColourMode)) {
                ml.setColourMode("&styles=" + shortname + "&format_options=dpi:600");
            }
            setProgress("Getting information: making map of " + shortname, 0);
            if (isCancelled())
                return;
            saveImage(shortname, new PrintMapComposer(extents, basemap, new MapLayer[] { mlArea, ml }, aspectRatio, "", type, resolution).get());
        }
    }
    setProgress("Getting information: making map of area", 0);
    if (isCancelled())
        return;
    saveImage("base_area", new PrintMapComposer(extents, basemap, new MapLayer[] { mlArea }, aspectRatio, "", type, resolution).get());
    setProgress("Getting information: making map of area overview", 0);
    if (isCancelled())
        return;
    saveImage("base_area_zoomed_out", new PrintMapComposer(extentsLarge, basemap, new MapLayer[] { mlArea }, aspectRatio, "", type, resolution).get());
    setProgress("Getting information: making occurrences", 0);
    if (isCancelled())
        return;
    saveImage(StringConstants.OCCURRENCES, new PrintMapComposer(extentsSmall, basemap, new MapLayer[] { mlArea, mlSpecies }, aspectRatio, "", type, resolution).get());
    setProgress("Getting information: making threatened species", 0);
    if (isCancelled())
        return;
    saveImage("Threatened_Species", new PrintMapComposer(extentsSmall, basemap, new MapLayer[] { mlArea, threatenedSpecies }, aspectRatio, "", type, resolution).get());
    setProgress("Getting information: making iconic species", 0);
    if (isCancelled())
        return;
    saveImage("Iconic_Species", new PrintMapComposer(extentsSmall, basemap, new MapLayer[] { mlArea, iconicSpecies }, aspectRatio, "", type, resolution).get());
    setProgress("Getting information: making migratory species", 0);
    if (isCancelled())
        return;
    saveImage("Migratory_Species", new PrintMapComposer(extentsSmall, basemap, new MapLayer[] { mlArea, migratorySpecies }, aspectRatio, "", type, resolution).get());
    setProgress("Getting information: making invasive species", 0);
    if (isCancelled())
        return;
    saveImage("Invasive_Species", new PrintMapComposer(extentsSmall, basemap, new MapLayer[] { mlArea, invasiveSpecies }, aspectRatio, "", type, resolution).get());
    for (int i = 0; i < StringConstants.SPECIES_GROUPS.length; i++) {
        setProgress("Getting information: making map of lifeform " + StringConstants.SPECIES_GROUPS[i], 0);
        if (isCancelled())
            return;
        saveImage("lifeform - " + StringConstants.SPECIES_GROUPS[i], new PrintMapComposer(extentsSmall, basemap, new MapLayer[] { mlArea, lifeforms.get(i) }, aspectRatio, "", type, resolution).get());
    }
    //save images
    setProgress("Getting information: saving maps", 0);
}

Example 23 with Facet

use of au.org.ala.legend.Facet in project spatial-portal by AtlasOfLivingAustralia.

the class AreaReportPDF method initCountThreatenedSpecies.

private void initCountThreatenedSpecies() {
    setProgress("Getting information: threatened species", 0);
    if (isCancelled())
        return;
    Facet f = new Facet("state_conservation", "Endangered", true);
    counts.put("Endangered Species", String.valueOf(query.newFacet(f, true).getSpeciesCount()));
}

Example 24 with Facet

use of au.org.ala.legend.Facet in project spatial-portal by AtlasOfLivingAustralia.

the class ToolComposer method onClick$btnOk.

public void onClick$btnOk(Event event) {
    if (btnOk.isDisabled()) {
        return;
    }
    boolean successful = false;
    try {
        if (!hasCustomArea && (isAreaCustom() || isAreaHighlightCustom())) {
            this.doOverlapped();
            this.setTop("-9999px");
            this.setLeft("-9999px");
            Map<String, Object> winProps = new HashMap<String, Object>();
            winProps.put(StringConstants.PARENT, this);
            winProps.put(StringConstants.PARENTNAME, "Tool");
            winProps.put(StringConstants.SELECTEDMETHOD, selectedMethod);
            List<MapLayer> layers = getMapComposer().getPolygonLayers();
            if (layers != null && !layers.isEmpty()) {
                prevTopArea = layers.get(0);
            } else {
                prevTopArea = null;
            }
            Window window = (Window) Executions.createComponents("WEB-INF/zul/add/AddArea.zul", this, winProps);
            window.setAttribute("winProps", winProps, true);
            window.setParent(this);
            window.doModal();
            return;
        }
        Div currentDiv = (Div) getFellowIfAny(StringConstants.ATSTEP + currentStep);
        Div nextDiv = (Div) getFellowIfAny(StringConstants.ATSTEP + (currentStep + 1));
        //ONLY perform these checks if the "lMultiple" or lMultipleBk" is on the current page
        if (Components.isAncestor(currentDiv, lMultiple) && rMultiple.isChecked()) {
            // display the dialog and change the radio button to "use existing"...
            if (Util.getUserEmail() != null && !"guest@ala.org.au".equals(Util.getUserEmail())) {
                showExportSpeciesListDialog(lMultiple);
                return;
            }
        } else if (Components.isAncestor(currentDiv, lMultipleBk) && rMultipleBk.isChecked()) {
            if (Util.getUserEmail() != null && !"guest@ala.org.au".equals(Util.getUserEmail())) {
                showExportSpeciesListDialog(lMultipleBk);
                return;
            }
        }
        if (!currentDiv.getZclass().contains(StringConstants.LAST)) {
            if (currentDiv.getZclass().contains(StringConstants.SPECIES) && (rSpeciesUploadSpecies != null && rSpeciesUploadSpecies.isSelected())) {
                Boolean test = currentDiv.getZclass().contains(StringConstants.SPECIES) && rSpeciesUploadSpecies.isSelected();
                LOGGER.debug("test=" + test);
                onClick$btnUpload(event);
            } else {
                currentDiv.setVisible(false);
                nextDiv.setVisible(true);
                Html previousStepCompletedImg = (Html) getFellowIfAny(StringConstants.IMG_COMPLETED_STEP + (currentStep));
                previousStepCompletedImg.setVisible(true);
                Label previousStepLabel = (Label) getFellowIfAny(StringConstants.LBLSTEP + (currentStep));
                previousStepLabel.setStyle(StringConstants.FONT_WEIGHT_NORMAL);
                Label currentStepLabel = (Label) getFellowIfAny(StringConstants.LBLSTEP + (currentStep + 1));
                currentStepLabel.setStyle(StringConstants.FONT_WEIGHT_BOLD);
                // now include the extra options for step 4
                if (nextDiv != null) {
                    if (nextDiv.getZclass().contains(StringConstants.LAST)) {
                        loadSummaryDetails();
                        onLastPanel();
                    }
                    btnOk.setLabel(StringConstants.NEXT_GT);
                }
                currentStep++;
                successful = true;
            }
        } else {
            saveLayerSelection();
            successful = onFinish();
            if (successful) {
                currentStep = 1;
            }
        }
        if (successful) {
            if (nextDiv != null && rgSpecies != null && (includeAnalysisLayersForUploadQuery || includeAnalysisLayersForAnyQuery)) {
                Query q = getSelectedSpecies();
                if (q != null) {
                    q = q.newFacet(new Facet("occurrence_status_s", "absent", false), false);
                    boolean test = includeAnalysisLayersForAnyQuery || (q instanceof UserDataQuery);
                    if (selectedLayersCombobox != null && (selectedLayersCombobox.getIncludeAnalysisLayers()) != test) {
                        selectedLayersCombobox.init(getMapComposer().getLayerSelections(), getMapComposer(), test);
                    }
                    if (lbListLayers != null && (lbListLayers.getIncludeAnalysisLayers()) != test) {
                        String[] selectedLayers = lbListLayers.getSelectedLayers();
                        lbListLayers.init(getMapComposer(), test, !includeContextualLayers, singleLayerDomain);
                        lbListLayers.updateDistances();
                        if (selectedLayers != null && selectedLayers.length > 0) {
                            lbListLayers.selectLayers(selectedLayers);
                        }
                        lbListLayers.renderAll();
                    }
                    if (cbLayer != null && (cbLayer.getIncludeAnalysisLayers()) != test) {
                        cbLayer.setIncludeAnalysisLayers(test);
                    }
                    if (cbLayerEnvironmentalOnly != null && (cbLayerEnvironmentalOnly.getIncludeAnalysisLayers()) != test) {
                        cbLayerEnvironmentalOnly.setIncludeAnalysisLayers(test);
                    }
                    if (cbLayer1 != null && (cbLayer1.getIncludeAnalysisLayers()) != test) {
                        cbLayer1.setIncludeAnalysisLayers(test);
                    }
                    if (cbLayer2 != null && (cbLayer2.getIncludeAnalysisLayers()) != test) {
                        cbLayer2.setIncludeAnalysisLayers(test);
                    }
                    if (cbLayerMix != null && (cbLayerMix.getIncludeAnalysisLayers()) != test) {
                        cbLayerMix.setIncludeAnalysisLayers(test);
                    }
                    if (mpLayer1 != null && mpLayer2 != null && mpLayersIncludeAnalysisLayers != test) {
                        // remove
                        while (!mpLayer1.getChildren().isEmpty()) {
                            mpLayer1.removeChild(mpLayer1.getFirstChild());
                        }
                        while (!mpLayer2.getChildren().isEmpty()) {
                            mpLayer2.removeChild(mpLayer2.getFirstChild());
                        }
                        // add
                        for (MapLayer ml : getMapComposer().getGridLayers()) {
                            addToMpLayers(ml, false);
                        }
                        mpLayersIncludeAnalysisLayers = test;
                        if (mpLayersIncludeAnalysisLayers) {
                            for (MapLayer ml : getMapComposer().getAnalysisLayers()) {
                                if (ml.getSubType() != LayerUtilitiesImpl.ALOC) {
                                    addToMpLayers(ml, true);
                                }
                            }
                        }
                    }
                }
            }
            if (nextDiv != null && nextDiv.getZclass().contains(StringConstants.LAST)) {
                updateLayerListText();
            }
            if (btnBack != null) {
                btnBack.setDisabled(false);
            }
            updateWindowTitle();
        }
    } catch (Exception e) {
        LOGGER.error("error progressing to next screen of tool", e);
    }
    toggles();
    displayTrafficLightInfo();
    fixFocus();
}

Example 25 with Facet

use of au.org.ala.legend.Facet in project spatial-portal by AtlasOfLivingAustralia.

the class AreaReportPDFComposer method onFinish.

@Override
public boolean onFinish() {
    if (pool != null) {
        return true;
    }
    //close any existing area report
    Window w = (Window) getPage().getFellowIfAny("popupResults");
    if (w != null) {
        w.detach();
    }
    SelectedArea sa = getSelectedArea();
    String areaName = getSelectedAreaName();
    String areaDisplayName = getSelectedAreaDisplayName();
    MapLayer ml = getMapComposer().getMapLayer(areaName);
    double[] bbox = null;
    if (ml != null && ml.getMapLayerMetadata().getBbox() != null && ml.getMapLayerMetadata().getBbox().size() == 4) {
        bbox = new double[4];
        bbox[0] = ml.getMapLayerMetadata().getBbox().get(0);
        bbox[1] = ml.getMapLayerMetadata().getBbox().get(1);
        bbox[2] = ml.getMapLayerMetadata().getBbox().get(2);
        bbox[3] = ml.getMapLayerMetadata().getBbox().get(3);
    }
    String wktTmp = (ml == null ? sa.getWkt() : (ml.getFacets() == null ? ml.getWKT() : null));
    if (wktTmp == null && ml != null && ml.getPid() != null) {
        wktTmp = Util.readUrl(CommonData.getLayersServer() + "/shape/wkt/" + ml.getPid());
    }
    final String queryWkt = (ml == null ? sa.getWkt() : (ml.getFacets() == null ? ml.getWKT() : null));
    final String area = areaDisplayName;
    final String wkt = wktTmp;
    final List<Facet> facets = (ml != null && ml.getFacets() != null ? ml.getFacets() : null);
    progress = new ConcurrentHashMap();
    progress.put("label", "Starting");
    progress.put("percent", 0.0);
    Callable pdfAreaReport = new Callable<AreaReportPDF>() {

        @Override
        public AreaReportPDF call() {
            return new AreaReportPDF(wkt, area, facets, queryWkt, progress);
        }
    };
    pool = Executors.newFixedThreadPool(1);
    future = pool.submit(pdfAreaReport);
    getMapComposer().getOpenLayersJavascript().execute("setTimeout('checkProgress()', 2000);");
    divProgress.setVisible(true);
    return true;
}