Examples with SelectedArea au.org.emii.portal.menu.SelectedArea used on opensource projects

Example 6 with SelectedArea

use of au.org.emii.portal.menu.SelectedArea in project spatial-portal by AtlasOfLivingAustralia.

the class ScatterplotListComposer method onFinish.

@Override
public boolean onFinish() {
    LOGGER.debug("Area: " + getSelectedArea());
    LOGGER.debug("Species: " + getSelectedSpecies());
    Query lsid = getSelectedSpecies();
    if (lsid == null) {
        getMapComposer().showMessage("There was a problem selecting the species.  Try to select the species again", this);
        return false;
    }
    lsid = lsid.newFacet(new Facet("occurrence_status_s", "absent", false), false);
    SelectedArea filterSa = getSelectedArea();
    SelectedArea highlightSa = getSelectedAreaHighlight();
    Query lsidQuery = QueryUtil.queryFromSelectedArea(lsid, filterSa, false, getGeospatialKosher());
    if (lsidQuery == null || lsidQuery.getOccurrenceCount() == 0) {
        getMapComposer().showMessage("No occurrences found for the selected species in the selected area.");
        return false;
    }
    String pid = "";
    Query backgroundLsid = getSelectedSpeciesBk();
    backgroundLsid = backgroundLsid.newFacet(new Facet("occurrence_status_s", "absent", false), false);
    if (bgSearchSpeciesACComp.hasValidAnnotatedItemSelected()) {
        backgroundLsid = bgSearchSpeciesACComp.getQuery((Map) getMapComposer().getSession().getAttribute(StringConstants.USERPOINTS), false, getGeospatialKosher());
    }
    boolean envGrid = chkShowEnvIntersection.isChecked();
    Query backgroundLsidQuery = null;
    if (backgroundLsid != null) {
        backgroundLsidQuery = QueryUtil.queryFromSelectedArea(backgroundLsid, filterSa, false, getGeospatialKosherBk());
    }
    String sbenvsel = getSelectedLayersWithDisplayNames();
    String[] layers = sbenvsel.split(":");
    if (layers.length > 20) {
        getMapComposer().showMessage(sbenvsel.split(":").length + " layers selected.  Please select fewer than 20 environmental layers in step 1.");
        return false;
    }
    StringBuilder layernames = new StringBuilder();
    String layerunits = "";
    for (int i = 0; i < layers.length; i++) {
        String[] split = layers[i].split("\\|");
        if (layernames.length() > 0) {
            layernames.append(",");
            layerunits += ",";
        }
        layers[i] = split[0];
        String layerDisplayName = split[1];
        layernames.append("\"").append(layerDisplayName.replace("\"", "\"\"").replace("\\", "\\\\")).append("\"");
        String units = "";
        try {
            units = String.valueOf(((JSONObject) CommonData.getLayer(layers[i]).get("layer")).get("environmentalvalueunits"));
        } catch (Exception e) {
        }
        layerunits += units;
    }
    try {
        HttpClient client = new HttpClient();
        PostMethod post = new PostMethod(CommonData.getSatServer() + "/ws/scatterplotlist");
        //add data parameters
        post.addParameter("layers", getSelectedLayers());
        post.addParameter("layernames", layernames.toString());
        post.addParameter("layerunits", layerunits);
        post.addParameter("foregroundOccurrencesQs", lsidQuery.getQ());
        post.addParameter("foregroundOccurrencesBs", lsidQuery.getBS());
        post.addParameter("foregroundName", lsidQuery.getName());
        if (backgroundLsidQuery != null) {
            post.addParameter("backgroundOccurrencesQs", backgroundLsidQuery.getQ());
            post.addParameter("backgroundOccurrencesBs", backgroundLsidQuery.getBS());
            post.addParameter("backgroundName", backgroundLsidQuery.getName());
        }
        if (envGrid) {
            post.addParameter("gridDivisions", "20");
        }
        if (filterSa != null) {
            post.addParameter("filterWkt", filterSa.getWkt());
        }
        //add style parameters (highlight area)
        if (highlightSa != null) {
            post.addParameter(StringConstants.HIGHLIGHT_WKT, highlightSa.getWkt());
        }
        post.addRequestHeader(StringConstants.ACCEPT, StringConstants.APPLICATION_JSON);
        client.executeMethod(post);
        String hasId = post.getResponseBodyAsString();
        JSONParser jp = new JSONParser();
        JSONObject jo = (JSONObject) jp.parse(hasId);
        String htmlUrl = null;
        String downloadUrl = null;
        if (jo.containsKey(StringConstants.ID)) {
            pid = jo.get(StringConstants.ID).toString();
        }
        if (jo.containsKey("htmlUrl")) {
            htmlUrl = jo.get("htmlUrl").toString();
        }
        if (jo.containsKey("downloadUrl")) {
            downloadUrl = jo.get("downloadUrl").toString();
        }
        if (htmlUrl != null && downloadUrl != null) {
            Events.echoEvent(StringConstants.OPEN_URL, getMapComposer(), htmlUrl);
            try {
                Filedownload.save(new URL(downloadUrl).openStream(), "application/zip", tToolName.getValue().replaceAll(" ", "_") + ".zip");
            } catch (Exception e) {
                LOGGER.error("error preparing download for scatterplot data", e);
            }
            try {
                String extras = "";
                if (highlightSa != null) {
                    extras += "highlight=" + highlightSa.getWkt();
                }
                if (backgroundLsid instanceof BiocacheQuery) {
                    extras += "background=" + ((BiocacheQuery) backgroundLsid).getLsids();
                } else if (backgroundLsid instanceof UserDataQuery) {
                    extras += "background=" + backgroundLsid.getQ();
                } else {
                    extras += "background=none";
                }
                if (lsidQuery instanceof BiocacheQuery) {
                    BiocacheQuery bq = (BiocacheQuery) lsidQuery;
                    extras = bq.getWS() + "|" + bq.getBS() + "|" + bq.getFullQ(false) + "|" + extras;
                    remoteLogger.logMapAnalysis(tToolName.getValue(), "Tool - Scatterplot List", filterSa.getWkt(), bq.getLsids(), sbenvsel, pid, extras, StringConstants.SUCCESSFUL);
                } else if (lsidQuery instanceof UserDataQuery) {
                    remoteLogger.logMapAnalysis(tToolName.getValue(), "Tool - Scatterplot List", filterSa.getWkt(), lsidQuery.getQ(), sbenvsel, pid, extras, StringConstants.SUCCESSFUL);
                } else {
                    remoteLogger.logMapAnalysis(tToolName.getValue(), "Tool - Scatterplot List", filterSa.getWkt(), "", sbenvsel, pid, extras, StringConstants.SUCCESSFUL);
                }
            } catch (Exception e) {
                LOGGER.error("failed to produce a scatterplot list.", e);
            }
        } else {
            LOGGER.error("failed to produce a scatterplot list.  response: " + jo);
        }
    } catch (Exception e) {
        LOGGER.error("error getting a new scatterplot id", e);
    }
    this.detach();
    return true;
}

Example 7 with SelectedArea

use of au.org.emii.portal.menu.SelectedArea in project spatial-portal by AtlasOfLivingAustralia.

the class ToolComposer method updateEndemicCheckBox.

private void updateEndemicCheckBox() {
    if (rAreaSelected == null) {
        return;
    }
    // check to see if the area is within the required size...
    boolean showEndemic = false;
    String value = rAreaSelected.getValue();
    if (!StringConstants.AUSTRALIA.equals(value) && !StringConstants.WORLD.equals(value) && !"custom".equals(value)) {
        String areaName = rAreaSelected.getLabel();
        MapLayer ml = getMapComposer().getMapLayer(areaName);
        String sarea = "";
        if (StringConstants.CURRENT.equals(value)) {
            // check to see if the current extent is within the maximum
            // area
            SelectedArea sa = getSelectedArea();
            sarea = sa.getKm2Area();
        } else if (ml != null) {
            sarea = ml.getAreaSqKm();
            if (sarea == null) {
                sarea = ml.calculateAndStoreArea();
            }
        }
        try {
            Float area = Float.parseFloat(sarea.replaceAll(",", ""));
            showEndemic = (area <= CommonData.getMaxEndemicArea());
        } catch (NumberFormatException e) {
            LOGGER.error("failed to parse endemic area from: " + sarea);
        }
    }
    chkEndemicSpecies.setDisabled(!showEndemic);
    chkEndemicSpecies.setChecked(false);
    if (lendemicNote != null) {
        if (showEndemic) {
            lendemicNote.setValue("Please note this may take several minutes depending on the area selected.");
        } else {
            lendemicNote.setValue("The selected area is too large to be considered for endemic species.");
        }
    }
}

Example 8 with SelectedArea

use of au.org.emii.portal.menu.SelectedArea in project spatial-portal by AtlasOfLivingAustralia.

the class SpeciesListComposer method onClick$btnDownload.

public void onClick$btnDownload() {
    SelectedArea sa = getSelectedArea();
    Map<String, Object> hm = new HashMap<String, Object>();
    hm.put("selectedarea", sa);
    hm.put("geospatialKosher", getGeospatialKosher());
    hm.put(StringConstants.CHOOSEENDEMIC, chkEndemicSpecies.isChecked());
    if (extraParams != null) {
        hm.put(StringConstants.EXTRAPARAMS, extraParams);
    }
    SpeciesListResults window = (SpeciesListResults) Executions.createComponents("WEB-INF/zul/results/AnalysisSpeciesListResults.zul", getMapComposer(), hm);
    try {
        window.setParent(getMapComposer());
        window.doModal();
    } catch (Exception e) {
        LOGGER.error("error opening analysisspecieslistresults.zul", e);
    }
    detach();
}

Example 9 with SelectedArea

use of au.org.emii.portal.menu.SelectedArea in project spatial-portal by AtlasOfLivingAustralia.

the class SamplingComposer method download.

public boolean download(Event event) {
    try {
        SelectedArea sa = getSelectedArea();
        Query query = QueryUtil.queryFromSelectedArea(getSelectedSpecies(), sa, false, getGeospatialKosher());
        //test size        
        if (query.getOccurrenceCount() <= 0) {
            getMapComposer().showMessage("No occurrences selected. Please try again", this);
            return false;
        }
        //translate layer names
        String[] layers = null;
        String[] layersDisplaynames = null;
        String envlayers = getSelectedLayersWithDisplayNames();
        if (envlayers.length() > 0) {
            layers = envlayers.split(":");
            layersDisplaynames = new String[layers.length];
            for (int i = 0; i < layers.length; i++) {
                String[] l = layers[i].split("\\|");
                String newName = CommonData.getLayerFacetName(l[0]);
                layers[i] = newName;
                layersDisplaynames[i] = l[1];
            }
        }
        if (query instanceof BiocacheQuery) {
            String[] inBiocache = null;
            String[] outBiocache;
            String[] outBiocacheDN;
            //split layers into 'in biocache' and 'out of biocache'
            Set<String> biocacheLayers = CommonData.getBiocacheLayerList();
            List<String> aInBiocache = new ArrayList<String>();
            List<String> aOutBiocache = new ArrayList<String>();
            List<String> aInBiocacheDN = new ArrayList<String>();
            List<String> aOutBiocacheDN = new ArrayList<String>();
            if (layers != null) {
                for (int i = 0; i < layers.length; i++) {
                    String s = layers[i];
                    if (biocacheLayers.contains(s)) {
                        aInBiocache.add(s);
                        aInBiocacheDN.add(layersDisplaynames[i]);
                    } else {
                        aOutBiocache.add(s);
                        aOutBiocacheDN.add(layersDisplaynames[i]);
                    }
                }
            }
            if (!aInBiocache.isEmpty()) {
                inBiocache = new String[aInBiocache.size()];
                aInBiocache.toArray(inBiocache);
            }
            if (!aOutBiocache.isEmpty()) {
                outBiocache = new String[aOutBiocache.size()];
                aOutBiocache.toArray(outBiocache);
                outBiocacheDN = new String[aOutBiocacheDN.size()];
                aOutBiocacheDN.toArray(outBiocacheDN);
                getMapComposer().setDownloadSecondQuery(query);
                getMapComposer().setDownloadSecondLayers(outBiocache, outBiocacheDN);
                SamplingAnalysisDownloadController c = (SamplingAnalysisDownloadController) Executions.createComponents("/WEB-INF/zul/output/SamplingAnalysisDownload.zul", getMapComposer(), null);
                c.setParent(getMapComposer());
                c.doModal();
            } else {
                getMapComposer().setDownloadSecondQuery(null);
                getMapComposer().setDownloadSecondLayers(null, null);
            }
            //test for URL download
            String url = query.getDownloadUrl(inBiocache);
            LOGGER.debug("Sending file to user: " + url);
            Events.echoEvent(StringConstants.OPEN_HTML, getMapComposer(), "Download\n" + url);
            try {
                remoteLogger.logMapAnalysis("species sampling", "Export - Species Sampling", sa.getWkt(), query.getName(), envlayers, pid, "", "download");
            } catch (Exception e) {
                LOGGER.error("remote logger error", e);
            }
            this.detach();
        } else {
            String fileUrl = query.getDownloadUrl(layers);
            Filedownload.save(new URL(fileUrl).openStream(), "application/zip", query.getName().replaceAll(" ", "_") + "_sample_" + ".zip");
            try {
                remoteLogger.logMapAnalysis("species sampling", "Export - Species Sampling", sa.getWkt(), query.getName(), envlayers, pid, "", "");
            } catch (Exception e) {
                LOGGER.error("remote logger error", e);
            }
            this.detach();
        }
        return true;
    } catch (Exception e) {
        LOGGER.error("Exception calling sampling.download:", e);
        getMapComposer().showMessage("Unknown error.", this);
    }
    return false;
}

Example 10 with SelectedArea

use of au.org.emii.portal.menu.SelectedArea in project spatial-portal by AtlasOfLivingAustralia.

the class ScatterplotComposer method onFinish.

@Override
public boolean onFinish() {
    LOGGER.debug("Area: " + getSelectedArea());
    LOGGER.debug("Species: " + getSelectedSpecies());
    Query lsid = getSelectedSpecies();
    if (lsid == null) {
        getMapComposer().showMessage("There was a problem selecting the species.  Try to select the species again", this);
        return false;
    }
    lsid = lsid.newFacet(new Facet("occurrence_status_s", "absent", false), false);
    String name = getSelectedSpeciesName();
    String sbenvsel = getSelectedLayersWithDisplayNames();
    String[] layers = sbenvsel.split(":");
    if (layers.length > 2 || layers.length < 2) {
        getMapComposer().showMessage(sbenvsel.split(":").length + " layers selected.  Please select 2 environmental layers in step 4.");
        return false;
    }
    String[] layerNames = new String[2];
    String[] layerValues = new String[2];
    for (int i = 0; i < layers.length; i++) {
        String[] split = layers[i].split("\\|");
        layerValues[i] = split[0];
        layerNames[i] = split[1];
    }
    String pid = "";
    Query backgroundLsid = getSelectedSpeciesBk();
    if (backgroundLsid != null)
        backgroundLsid = backgroundLsid.newFacet(new Facet("occurrence_status_s", "absent", false), false);
    if (bgSearchSpeciesACComp.hasValidAnnotatedItemSelected()) {
        backgroundLsid = bgSearchSpeciesACComp.getQuery((Map) getMapComposer().getSession().getAttribute(StringConstants.USERPOINTS), false, getGeospatialKosher());
    }
    SelectedArea filterSa = getSelectedArea();
    if (filterSa == null) {
        LOGGER.error("scatterplot area is null");
        return false;
    }
    SelectedArea highlightSa = getSelectedAreaHighlight();
    boolean envGrid = chkShowEnvIntersection.isChecked();
    Query lsidQuery = QueryUtil.queryFromSelectedArea(lsid, filterSa, false, getGeospatialKosher());
    Query backgroundLsidQuery = null;
    if (backgroundLsid != null) {
        backgroundLsidQuery = QueryUtil.queryFromSelectedArea(backgroundLsid, filterSa, false, getGeospatialKosherBk());
    }
    ScatterplotDataDTO d = new ScatterplotDataDTO(lsidQuery, name, layerValues[0], layerNames[0], layerValues[1], layerNames[1], pid, null, true, highlightSa);
    try {
        HttpClient client = new HttpClient();
        PostMethod post = new PostMethod(CommonData.getSatServer() + "/ws/scatterplot/new");
        //add data parameters
        String layerunits = "";
        try {
            String envUnits1 = ((JSONObject) CommonData.getLayer(layerValues[0]).get("layer")).get("environmentalvalueunits").toString();
            String envUnits2 = ((JSONObject) CommonData.getLayer(layerValues[1]).get("layer")).get("environmentalvalueunits").toString();
            layerunits = envUnits1 + "," + envUnits2;
        } catch (Exception e) {
        }
        //colon delimited
        post.addParameter("layers", layerValues[0] + ":" + layerValues[1]);
        //CSV format
        post.addParameter("layernames", "\"" + layerNames[0].replace("\"", "\"\"").replace("\\", "\\\\") + "\",\"" + layerNames[1].replace("\"", "\"\"").replace("\\", "\\\\") + "\"");
        post.addParameter("layerunits", layerunits);
        post.addParameter("foregroundOccurrencesQs", lsidQuery.getQ());
        post.addParameter("foregroundOccurrencesBs", lsidQuery.getBS());
        post.addParameter("foregroundName", lsidQuery.getName());
        if (backgroundLsidQuery != null) {
            post.addParameter("backgroundOccurrencesQs", backgroundLsidQuery.getQ());
            post.addParameter("backgroundOccurrencesBs", backgroundLsidQuery.getBS());
            post.addParameter("backgroundName", backgroundLsidQuery.getName());
        }
        if (envGrid) {
            post.addParameter("gridDivisions", "20");
        }
        post.addParameter("filterWkt", filterSa.getWkt());
        //add style parameters (highlight area)
        if (highlightSa != null) {
            post.addParameter(StringConstants.HIGHLIGHT_WKT, highlightSa.getWkt());
        }
        post.addRequestHeader(StringConstants.ACCEPT, StringConstants.APPLICATION_JSON);
        client.executeMethod(post);
        String str = post.getResponseBodyAsString();
        JSONParser jp = new JSONParser();
        JSONObject jsonObject = (JSONObject) jp.parse(str);
        if (jsonObject != null && jsonObject.containsKey(StringConstants.ID)) {
            d.setId(jsonObject.get(StringConstants.ID).toString());
            d.setMissingCount(Integer.parseInt(jsonObject.get("missingCount").toString()));
        } else {
            LOGGER.error("error parsing scatterplot id from: " + str);
        }
    } catch (Exception e) {
        LOGGER.error("error getting a new scatterplot id", e);
    }
    getMapComposer().loadScatterplot(d, tToolName.getValue());
    this.detach();
    try {
        String extras = "";
        if (lsidQuery instanceof BiocacheQuery) {
            BiocacheQuery bq = (BiocacheQuery) lsidQuery;
            extras = bq.getWS() + "|" + bq.getBS() + "|" + bq.getFullQ(false) + "|" + extras;
            remoteLogger.logMapAnalysis(tToolName.getValue(), StringConstants.TOOL_SCATTERPLOT, filterSa.getWkt(), bq.getLsids(), layerValues[0] + ":" + layerValues[1], pid, extras, StringConstants.SUCCESSFUL);
        } else if (lsidQuery instanceof UserDataQuery) {
            remoteLogger.logMapAnalysis(tToolName.getValue(), StringConstants.TOOL_SCATTERPLOT, filterSa.getWkt(), lsidQuery.getQ(), "", pid, extras, StringConstants.SUCCESSFUL);
        } else {
            remoteLogger.logMapAnalysis(tToolName.getValue(), StringConstants.TOOL_SCATTERPLOT, filterSa.getWkt(), "", "", pid, extras, StringConstants.SUCCESSFUL);
        }
    } catch (Exception e) {
        LOGGER.error("logging error", e);
    }
    return true;
}