Examples with Taxon beast.evolution.alignment.Taxon used on opensource projects

Example 26 with Taxon

use of beast.evolution.alignment.Taxon in project beast2 by CompEvol.

the class XMLTest method testAnnotatedConstructor2.

@Test
public void testAnnotatedConstructor2() throws Exception {
    List<Taxon> taxa = new ArrayList<>();
    taxa.add(new Taxon("first one"));
    taxa.add(new Taxon("second one"));
    AnnotatedRunnableTestClass t = new AnnotatedRunnableTestClass(3, taxa);
    XMLProducer producer = new XMLProducer();
    String xml = producer.toXML(t);
    assertEquals(3, (int) t.getParam1());
    FileWriter outfile = new FileWriter(new File("/tmp/XMLTest.xml"));
    outfile.write(xml);
    outfile.close();
    XMLParser parser = new XMLParser();
    BEASTInterface b = parser.parseFile(new File("/tmp/XMLTest.xml"));
    assertEquals(3, (int) ((AnnotatedRunnableTestClass) b).getParam1());
    assertEquals(2, ((AnnotatedRunnableTestClass) b).getTaxon().size());
}