Examples with ExchangeDefinition bio.fkaiser.fit3d.web.model.ExchangeDefinition used on opensource projects

Example 1 with ExchangeDefinition

use of bio.fkaiser.fit3d.web.model.ExchangeDefinition in project fit3d by fkaiserbio.

the class JobConverter method toFit3DJob.

@SuppressWarnings("unchecked")
public static Fit3DJob toFit3DJob(Document jobDocument) {
    Document parametersObject = (Document) jobDocument.get("parameters");
    List<ExchangeDefinition> exchangeDefinitions = ((List<String>) parametersObject.get("exchangeDefinitions")).stream().map(ExchangeDefinition::fromString).collect(Collectors.toList());
    Fit3DJobParameters parameters = new Fit3DJobParameters();
    parameters.setAtomFilterType(AtomFilterType.valueOf((String) parametersObject.get("atomFilterType")));
    parameters.setPdbTargetList((boolean) parametersObject.get("pdbTargetList"));
    parameters.setChainTargetList((boolean) parametersObject.get("chainTargetList"));
    parameters.setTargetListPath(Paths.get((String) parametersObject.get("targetListPath")));
    parameters.setMotifPath(Paths.get((String) parametersObject.get("motifPath")));
    parameters.setStatisticalModelType(StatisticalModelType.valueOf((String) parametersObject.get("statisticalModel")));
    parameters.setRmsdLimit((double) parametersObject.get("rmsdLimit"));
    parameters.setExchangeDefinitions(exchangeDefinitions);
    Fit3DJob fit3dJob = new Fit3DJob();
    fit3dJob.setTimeStamp(LocalDateTime.parse((String) jobDocument.get("timeStamp")));
    fit3dJob.setSessionIdentifier((UUID.fromString((String) jobDocument.get("sessionIdentifier"))));
    fit3dJob.setIpAddress((String) jobDocument.get("ipAddress"));
    fit3dJob.setJobIdentifier(UUID.fromString((String) jobDocument.get("jobIdentifier")));
    fit3dJob.setJobPath(Paths.get((String) jobDocument.get("jobPath")));
    fit3dJob.setDescription((String) jobDocument.get("description"));
    fit3dJob.setEmail((String) jobDocument.get("email"));
    fit3dJob.setEnqueued((boolean) jobDocument.get("enqueued"));
    fit3dJob.setRunning((boolean) jobDocument.get("running"));
    fit3dJob.setFinished((boolean) jobDocument.get("finished"));
    fit3dJob.setFailed((boolean) jobDocument.get("failed"));
    fit3dJob.setSendMail((boolean) jobDocument.get("sendMail"));
    fit3dJob.setErrorMessage((String) jobDocument.get("errorMessage"));
    fit3dJob.setParameters(parameters);
    return fit3dJob;
}