Examples with ValidationException bio.terra.app.controller.exception.ValidationException used on opensource projects

Example 1 with ValidationException

use of bio.terra.app.controller.exception.ValidationException in project jade-data-repo by DataBiosphere.

the class RepositoryApiController method deleteDatasetPolicyMember.

@Override
public ResponseEntity<PolicyResponse> deleteDatasetPolicyMember(@PathVariable("id") String id, @PathVariable("policyName") String policyName, @PathVariable("memberEmail") String memberEmail) {
    // member email can't be null since it is part of the URL
    if (!ValidationUtils.isValidEmail(memberEmail)) {
        throw new ValidationException("InvalidMemberEmail");
    }
    PolicyModel policy = iamService.deletePolicyMember(getAuthenticatedInfo(), IamResourceType.DATASET, UUID.fromString(id), policyName, memberEmail);
    PolicyResponse response = new PolicyResponse().policies(Collections.singletonList(policy));
    return new ResponseEntity<>(response, HttpStatus.OK);
}

Example 2 with ValidationException

use of bio.terra.app.controller.exception.ValidationException in project jade-data-repo by DataBiosphere.

the class RepositoryApiController method deleteSnapshotPolicyMember.

@Override
public ResponseEntity<PolicyResponse> deleteSnapshotPolicyMember(@PathVariable("id") String id, @PathVariable("policyName") String policyName, @PathVariable("memberEmail") String memberEmail) {
    // member email can't be null since it is part of the URL
    if (!ValidationUtils.isValidEmail(memberEmail)) {
        throw new ValidationException("InvalidMemberEmail");
    }
    PolicyModel policy = iamService.deletePolicyMember(getAuthenticatedInfo(), IamResourceType.DATASNAPSHOT, UUID.fromString(id), policyName, memberEmail);
    PolicyResponse response = new PolicyResponse().policies(Collections.singletonList(policy));
    return new ResponseEntity<>(response, HttpStatus.OK);
}

Example 3 with ValidationException

use of bio.terra.app.controller.exception.ValidationException in project jade-data-repo by DataBiosphere.

the class SnapshotService method makeSnapshotFromSnapshotRequest.

/**
 * Make a Snapshot structure with all of its parts from an incoming snapshot request.
 * Note that the structure does not have UUIDs or created dates filled in. Those are
 * updated by the DAO when it stores the snapshot in the repository metadata.
 *
 * @param snapshotRequestModel
 * @return Snapshot
 */
public Snapshot makeSnapshotFromSnapshotRequest(SnapshotRequestModel snapshotRequestModel) {
    // Make this early so we can hook up back links to it
    Snapshot snapshot = new Snapshot();
    List<SnapshotRequestContentsModel> requestContentsList = snapshotRequestModel.getContents();
    // TODO: for MVM we only allow one source list
    if (requestContentsList.size() > 1) {
        throw new ValidationException("Only a single snapshot contents entry is currently allowed.");
    }
    SnapshotRequestContentsModel requestContents = requestContentsList.get(0);
    Dataset dataset = datasetService.retrieveByName(requestContents.getDatasetName());
    SnapshotSource snapshotSource = new SnapshotSource().snapshot(snapshot).dataset(dataset);
    switch(snapshotRequestModel.getContents().get(0).getMode()) {
        case BYASSET:
            // TODO: When we implement explicit definition of snapshot tables, we will handle that here.
            // For now, we generate the snapshot tables directly from the asset tables of the one source
            // allowed in a snapshot.
            AssetSpecification assetSpecification = getAssetSpecificationFromRequest(requestContents);
            snapshotSource.assetSpecification(assetSpecification);
            conjureSnapshotTablesFromAsset(snapshotSource.getAssetSpecification(), snapshot, snapshotSource);
            break;
        case BYFULLVIEW:
            conjureSnapshotTablesFromDatasetTables(snapshot, snapshotSource);
            break;
        case BYQUERY:
            SnapshotRequestQueryModel queryModel = requestContents.getQuerySpec();
            String assetName = queryModel.getAssetName();
            String snapshotQuery = queryModel.getQuery();
            Query query = Query.parse(snapshotQuery);
            List<String> datasetNames = query.getDatasetNames();
            // TODO this makes the assumption that there is only one dataset
            // (based on the validation flight step that already occurred.)
            // This will change when more than 1 dataset is allowed
            String datasetName = datasetNames.get(0);
            Dataset queryDataset = datasetService.retrieveByName(datasetName);
            AssetSpecification queryAssetSpecification = queryDataset.getAssetSpecificationByName(assetName).orElseThrow(() -> new AssetNotFoundException("This dataset does not have an asset specification with name: " + assetName));
            snapshotSource.assetSpecification(queryAssetSpecification);
            // TODO this is wrong? why dont we just pass the assetSpecification?
            conjureSnapshotTablesFromAsset(snapshotSource.getAssetSpecification(), snapshot, snapshotSource);
            break;
        case BYROWID:
            SnapshotRequestRowIdModel requestRowIdModel = requestContents.getRowIdSpec();
            conjureSnapshotTablesFromRowIds(requestRowIdModel, snapshot, snapshotSource);
            break;
        default:
            throw new InvalidSnapshotException("Snapshot does not have required mode information");
    }
    return snapshot.name(snapshotRequestModel.getName()).description(snapshotRequestModel.getDescription()).snapshotSources(Collections.singletonList(snapshotSource)).profileId(UUID.fromString(snapshotRequestModel.getProfileId())).relationships(createSnapshotRelationships(dataset.getRelationships(), snapshotSource));
}

Example 4 with ValidationException

use of bio.terra.app.controller.exception.ValidationException in project jade-data-repo by DataBiosphere.

the class DeleteDatasetValidateStep method doStep.

@Override
public StepResult doStep(FlightContext context) {
    List<SnapshotSummary> snapshots = snapshotDao.retrieveSnapshotsForDataset(datasetId);
    Dataset dataset = datasetService.retrieve(datasetId);
    if (snapshots.size() != 0) {
        throw new ValidationException("Can not delete a dataset being used by snapshots");
    }
    // if there are no snapshots returned from retrieveSnapshotsForDataset.
    if (dependencyDao.datasetHasSnapshotReference(dataset)) {
        throw new FileSystemCorruptException("File system has snapshot dependencies; metadata does not");
    }
    return StepResult.getStepResultSuccess();
}

Example 5 with ValidationException

use of bio.terra.app.controller.exception.ValidationException in project jade-data-repo by DataBiosphere.

the class RepositoryApiController method lookupSnapshotFileByPath.

@Override
public ResponseEntity<FileModel> lookupSnapshotFileByPath(@PathVariable("id") String id, @RequestParam(value = "path", required = true) String path, @RequestParam(value = "depth", required = false, defaultValue = "0") Integer depth) {
    iamService.verifyAuthorization(getAuthenticatedInfo(), IamResourceType.DATASNAPSHOT, id, IamAction.READ_DATA);
    if (!ValidationUtils.isValidPath(path)) {
        throw new ValidationException("InvalidPath");
    }
    FileModel fileModel = fileService.lookupSnapshotPath(id, path, depth);
    return new ResponseEntity<>(fileModel, HttpStatus.OK);
}